BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0060.3
         (388 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Y990_CAMJE (P45489) Hypothetical protein Cj0990c                       35  0.42
MAO2_RICPR (Q9ZDF6) Probable NADP-dependent malic enzyme (EC 1.1...    33  0.95
Z441_HUMAN (Q8N8Z8) Zinc finger protein 441                            30  8.0

>Y990_CAMJE (P45489) Hypothetical protein Cj0990c
          Length = 253

 Score = 34.7 bits (78), Expect = 0.42
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 298 EVLFKVRNDVRRLYDGCFCYDVLHICSDSETMDKFSAKRTSVTLVESKSDSRVTYLEEDN 357
           +++FK ++    +   CFC D   I    E  D      ++V L+E   DS  T+ E   
Sbjct: 4   KIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSNVDLLEFSDDS-FTFEEIVK 62

Query: 358 KQAVCVVEKVGLLDEDEMISNVKHNWNQ 385
              +C  E + ++++ +M SN K N NQ
Sbjct: 63  HFNICDTEDMIIVEDFDMKSN-KDNQNQ 89


>MAO2_RICPR (Q9ZDF6) Probable NADP-dependent malic enzyme (EC
           1.1.1.40) (NADP-ME)
          Length = 767

 Score = 33.5 bits (75), Expect = 0.95
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 25/132 (18%)

Query: 111 SVESRELIVQSIPNVTKLHINPVVEDQSVFNERFSGFEI-------EEP------VEYLG 157
           +V S    V  + N+      PV+E ++V  ++F+  +        E+P      V+YLG
Sbjct: 71  AVISNGTAVLGLGNLGAAASKPVMEGKAVLFKKFADIDAIDLEVNTEDPIEFINAVKYLG 130

Query: 158 YRDSEFNLQD-----DFIHLHPAKTLLQL--IHTEQRGVFIVQARIVSVIKAAGWAYPSC 210
           Y     NL+D      F+     K+L+ +   H +Q G  I+ A    +I A   AY + 
Sbjct: 131 YSFGGINLEDIKAPECFLIEEKLKSLMDIPVFHDDQHGTAIITA--AGLINA---AYLTN 185

Query: 211 RCYSELKVVNHG 222
           R   +LK+V +G
Sbjct: 186 RTLKDLKIVING 197


>Z441_HUMAN (Q8N8Z8) Zinc finger protein 441
          Length = 626

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 6/54 (11%)

Query: 201 KAAGWAYPSCRCYSELKVVNH----GYSCSRCCRTMIMIFYFYRYRLNVHVSDG 250
           K  G A+ SC CY++L    H     Y C +C +    +  F R+ + VH  DG
Sbjct: 188 KQCGKAF-SCSCYTQLYERTHTGEQSYECKQCGKAFYHLGSFQRHMI-VHTGDG 239


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,563,314
Number of Sequences: 164201
Number of extensions: 1840200
Number of successful extensions: 4319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4319
Number of HSP's gapped (non-prelim): 3
length of query: 388
length of database: 59,974,054
effective HSP length: 112
effective length of query: 276
effective length of database: 41,583,542
effective search space: 11477057592
effective search space used: 11477057592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)