BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0060.17
(128 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CRN1_HUMAN (Q9BZJ0) Crooked neck-like protein 1 (Crooked neck ho... 149 1e-36
CRN1_RAT (P63155) Crooked neck-like protein 1 (Crooked neck homo... 146 9e-36
CRN1_MOUSE (P63154) Crooked neck-like protein 1 (Crooked neck ho... 146 9e-36
CRN_DROME (P17886) Crooked neck protein 137 3e-33
CWF4_SCHPO (P87312) Cell cycle control protein cwf4 112 1e-25
MBB1_CHLRE (Q9FNS4) PsbB mRNA maturation factor Mbb1, chloroplas... 42 2e-04
RRP5_YEAST (Q05022) rRNA biogenesis protein RRP5 40 0.001
RRP5_HUMAN (Q14690) RRP5 protein homolog (Programmed cell death ... 40 0.001
PRPU_MOUSE (Q91YR7) U5 snRNP-associated 102 kDa protein (U5-102 ... 38 0.004
PRP1_SCHPO (Q12381) Pre-mRNA splicing factor prp1 37 0.008
CWF3_SCHPO (Q9P7R9) Cell cycle control protein cwf3 37 0.008
PRP6_YEAST (P19735) Pre-mRNA splicing factor PRP6 33 0.11
PRPU_HUMAN (O94906) U5 snRNP-associated 102 kDa protein (U5-102 ... 32 0.25
CNA2_HUMAN (Q9H7Z3) Protein C14orf102 32 0.32
ATX9_TETTH (Q95050) Probable cation-transporting ATPase 9 (EC 3.... 32 0.32
CNA2_MOUSE (Q80XC6) Protein C14orf102 homolog 31 0.42
WD17_HUMAN (Q8IZU2) WD-repeat protein 17 30 0.94
Y920_TREPA (O83890) Hypothetical protein TP0920 29 1.6
PO5L_HUMAN (Q06416) POU domain, class 5, transcription factor 1-... 28 2.7
NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplas... 28 2.7
>CRN1_HUMAN (Q9BZJ0) Crooked neck-like protein 1 (Crooked neck
homolog) (hCrn) (CGI-201) (MSTP021)
Length = 848
Score = 149 bits (375), Expect = 1e-36
Identities = 72/113 (63%), Positives = 88/113 (77%)
Query: 11 QKFSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRK 70
+KF+FA MW+L AQFEIRQ NL A LG++IGK PK+K+ K YIE+ELQL DRCRK
Sbjct: 568 KKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYIELELQLREFDRCRK 627
Query: 71 LYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWK 123
LYEK+LE+ ENC +W K+A LE L + DRAR+I+ELAISQP DMPE+LWK
Sbjct: 628 LYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWK 680
Score = 40.8 bits (94), Expect = 5e-04
Identities = 21/58 (36%), Positives = 32/58 (54%)
Query: 54 KYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAIS 111
KY + E L I R R +YE+ L+ N W KYA +E + + AR+I++ AI+
Sbjct: 247 KYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAIT 304
Score = 39.7 bits (91), Expect = 0.001
Identities = 27/109 (24%), Positives = 48/109 (43%), Gaps = 6/109 (5%)
Query: 2 QGVSTLDTSQKFSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQ 61
+ ++TL +F W E N+ GA + + P+++ YI EL+
Sbjct: 301 RAITTLPRVNQF-----WYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELR 355
Query: 62 LGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAI 110
+DR R +YE+++ + W KYA E + AR ++E A+
Sbjct: 356 YKEVDRARTIYERFV-LVHPDVKNWIKYARFEEKHAYFAHARKVYERAV 403
Score = 34.7 bits (78), Expect = 0.038
Identities = 28/118 (23%), Positives = 51/118 (42%), Gaps = 11/118 (9%)
Query: 17 NMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKD---KILKKYIEIELQLGN--------I 65
++++ A+FE Q + VI A+ + K ++ K Y E + G+ +
Sbjct: 414 HLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIV 473
Query: 66 DRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWK 123
+ R YE+ ++ N AW Y L S +E + R ++E AI+ + WK
Sbjct: 474 SKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWK 531
Score = 32.3 bits (72), Expect = 0.19
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 67 RCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAI 110
R RK +E + W KYA E SL E RARSI+E A+
Sbjct: 226 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 269
Score = 30.4 bits (67), Expect = 0.72
Identities = 25/97 (25%), Positives = 43/97 (43%), Gaps = 7/97 (7%)
Query: 19 WLLAAQFEIRQLNLKGAHVILGSAIGKAPKDK---ILKKYIEIELQLGNIDRCRKLYEKY 75
W+ A+ E ++ A I AI + D + K YI+ E++ +R R LY +
Sbjct: 643 WIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRL 702
Query: 76 LEWALENCYAWSKYA*LERSLSE---TDRARSIFELA 109
L+ ++ W +A E S + + R I+E A
Sbjct: 703 LQ-RTQHVKVWISFAQFELSSGKEGSLTKCRQIYEEA 738
Score = 30.4 bits (67), Expect = 0.72
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 19 WLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEW 78
W FE+R + A I + P K KY E + RK+YE+ +E+
Sbjct: 346 WHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHAYFAHARKVYERAVEF 405
Query: 79 ALE---NCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWKVNIIY 128
+ + + + +A E + E +R R I++ A+ + + + L+K I+
Sbjct: 406 FGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIF 458
>CRN1_RAT (P63155) Crooked neck-like protein 1 (Crooked neck
homolog) (Crooked neck protein)
Length = 690
Score = 146 bits (368), Expect = 9e-36
Identities = 71/113 (62%), Positives = 87/113 (76%)
Query: 11 QKFSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRK 70
+KF+FA MWL AQFEIRQ NL A LG++IGK PK+K+ K YIE+ELQL DRCRK
Sbjct: 407 KKFTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRK 466
Query: 71 LYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWK 123
LYEK+LE+ ENC +W K+A LE L + +RAR+I+ELAISQP DMPE+LWK
Sbjct: 467 LYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWK 519
Score = 40.8 bits (94), Expect = 5e-04
Identities = 21/58 (36%), Positives = 32/58 (54%)
Query: 54 KYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAIS 111
KY + E L I R R +YE+ L+ N W KYA +E + + AR+I++ AI+
Sbjct: 86 KYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAIT 143
Score = 39.3 bits (90), Expect = 0.002
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 2 QGVSTLDTSQKFSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQ 61
+ ++TL +F W E N+ GA + + P+++ YI EL+
Sbjct: 140 RAITTLPRVNQF-----WYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELR 194
Query: 62 LGNIDRCRKLYEKY--LEWALENCYAWSKYA*LERSLSETDRARSIFELAI 110
++R R +YE++ + A++N W KYA E + AR ++E A+
Sbjct: 195 YKEVERARTIYERFVLVHPAVKN---WIKYARFEEKHAYFAHARKVYERAV 242
Score = 36.2 bits (82), Expect = 0.013
Identities = 29/118 (24%), Positives = 51/118 (42%), Gaps = 11/118 (9%)
Query: 17 NMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDK---ILKKYIEIELQLGN--------I 65
++++ A+FE Q + VI A+ + K + + K Y E + G+ +
Sbjct: 253 HLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIV 312
Query: 66 DRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWK 123
+ R YE+ ++ N AW Y L S +E D R ++E AI+ + WK
Sbjct: 313 SKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWK 370
Score = 32.3 bits (72), Expect = 0.19
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 67 RCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAI 110
R RK +E + W KYA E SL E RARSI+E A+
Sbjct: 65 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 108
Score = 31.6 bits (70), Expect = 0.32
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 19 WLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEW 78
W FE+R ++ A I + P K KY E + RK+YE+ +E+
Sbjct: 185 WHSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHARKVYERAVEF 244
Query: 79 ALE---NCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWKVNIIY 128
+ + + + +A E + E +R R I++ A+ + + + L+K I+
Sbjct: 245 FGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIF 297
Score = 30.8 bits (68), Expect = 0.55
Identities = 25/97 (25%), Positives = 44/97 (44%), Gaps = 7/97 (7%)
Query: 19 WLLAAQFEIRQLNLKGAHVILGSAIGKAPKDK---ILKKYIEIELQLGNIDRCRKLYEKY 75
W+ A+ E +++ A I AI + D + K YI+ E++ +R R LY +
Sbjct: 482 WIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRQL 541
Query: 76 LEWALENCYAWSKYA*LERSLSE---TDRARSIFELA 109
L+ ++ W +A E S + + R I+E A
Sbjct: 542 LQ-RTQHVKVWISFAQFELSSGKEGSVAKCRQIYEEA 577
>CRN1_MOUSE (P63154) Crooked neck-like protein 1 (Crooked neck
homolog)
Length = 690
Score = 146 bits (368), Expect = 9e-36
Identities = 71/113 (62%), Positives = 87/113 (76%)
Query: 11 QKFSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRK 70
+KF+FA MWL AQFEIRQ NL A LG++IGK PK+K+ K YIE+ELQL DRCRK
Sbjct: 407 KKFTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRK 466
Query: 71 LYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWK 123
LYEK+LE+ ENC +W K+A LE L + +RAR+I+ELAISQP DMPE+LWK
Sbjct: 467 LYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWK 519
Score = 40.8 bits (94), Expect = 5e-04
Identities = 21/58 (36%), Positives = 32/58 (54%)
Query: 54 KYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAIS 111
KY + E L I R R +YE+ L+ N W KYA +E + + AR+I++ AI+
Sbjct: 86 KYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAIT 143
Score = 39.3 bits (90), Expect = 0.002
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 2 QGVSTLDTSQKFSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQ 61
+ ++TL +F W E N+ GA + + P+++ YI EL+
Sbjct: 140 RAITTLPRVNQF-----WYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELR 194
Query: 62 LGNIDRCRKLYEKY--LEWALENCYAWSKYA*LERSLSETDRARSIFELAI 110
++R R +YE++ + A++N W KYA E + AR ++E A+
Sbjct: 195 YKEVERARTIYERFVLVHPAVKN---WIKYARFEEKHAYFAHARKVYERAV 242
Score = 36.2 bits (82), Expect = 0.013
Identities = 29/118 (24%), Positives = 51/118 (42%), Gaps = 11/118 (9%)
Query: 17 NMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDK---ILKKYIEIELQLGN--------I 65
++++ A+FE Q + VI A+ + K + + K Y E + G+ +
Sbjct: 253 HLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIV 312
Query: 66 DRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWK 123
+ R YE+ ++ N AW Y L S +E D R ++E AI+ + WK
Sbjct: 313 SKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWK 370
Score = 32.3 bits (72), Expect = 0.19
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 67 RCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAI 110
R RK +E + W KYA E SL E RARSI+E A+
Sbjct: 65 RKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 108
Score = 31.6 bits (70), Expect = 0.32
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 19 WLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEW 78
W FE+R ++ A I + P K KY E + RK+YE+ +E+
Sbjct: 185 WHSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHARKVYERAVEF 244
Query: 79 ALE---NCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWKVNIIY 128
+ + + + +A E + E +R R I++ A+ + + + L+K I+
Sbjct: 245 FGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIF 297
Score = 30.8 bits (68), Expect = 0.55
Identities = 25/97 (25%), Positives = 44/97 (44%), Gaps = 7/97 (7%)
Query: 19 WLLAAQFEIRQLNLKGAHVILGSAIGKAPKDK---ILKKYIEIELQLGNIDRCRKLYEKY 75
W+ A+ E +++ A I AI + D + K YI+ E++ +R R LY +
Sbjct: 482 WIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRQL 541
Query: 76 LEWALENCYAWSKYA*LERSLSE---TDRARSIFELA 109
L+ ++ W +A E S + + R I+E A
Sbjct: 542 LQ-RTQHVKVWISFAQFELSSGKEGSVAKCRQIYEEA 577
>CRN_DROME (P17886) Crooked neck protein
Length = 702
Score = 137 bits (346), Expect = 3e-33
Identities = 65/116 (56%), Positives = 84/116 (72%)
Query: 11 QKFSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRK 70
++F+F+ +WLL AQFEIR L+ A LG AIG P+DK+ + YI++E+QL +RCR
Sbjct: 402 KQFTFSKLWLLYAQFEIRCKELQRARKALGLAIGMCPRDKLFRGYIDLEIQLREFERCRM 461
Query: 71 LYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWKVNI 126
LYEK+LE+ ENC W K+A LE L +TDRAR+IFELA+ QP DMPELLWK I
Sbjct: 462 LYEKFLEFGPENCVTWMKFAELENLLGDTDRARAIFELAVQQPRLDMPELLWKAYI 517
Score = 41.2 bits (95), Expect = 4e-04
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 19 WLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEW 78
W E N+ GA + + P+++ + Y+ EL+ IDR R++YE+++ +
Sbjct: 147 WYKYTYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVNFELRYKEIDRAREIYERFV-Y 205
Query: 79 ALENCYAWSKYA*LERSLSETDRARSIFELAI 110
+ W K+A E S +R +FE A+
Sbjct: 206 VHPDVKNWIKFARFEESHGFIHGSRRVFERAV 237
Score = 37.0 bits (84), Expect = 0.008
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 54 KYIEIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAIS 111
KY + E Q I R R ++E+ L+ N W KYA +E + + AR++++ A++
Sbjct: 81 KYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVT 138
Score = 35.4 bits (80), Expect = 0.022
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 19 WLLAAQFEIRQLNLKGAHVILGSAIGKAPKDK---ILKKYIEIELQLGNIDRCRKLYEKY 75
W+ A+ E + A I A+ + D + K YI+ E+ LG + R+LYE+
Sbjct: 477 WMKFAELENLLGDTDRARAIFELAVQQPRLDMPELLWKAYIDFEVALGETELARQLYERL 536
Query: 76 LEWALENCYAWSKYA*LERSLSETD 100
LE ++ W +A E LS D
Sbjct: 537 LE-RTQHVKVWMSFAKFEMGLSHGD 560
Score = 32.7 bits (73), Expect = 0.14
Identities = 28/117 (23%), Positives = 50/117 (41%), Gaps = 11/117 (9%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDK---ILKKYIEIELQLGN--------ID 66
+++ A+FE Q A +I A+ PKD+ + K Y + E + G+ +
Sbjct: 249 LFIAFARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVS 308
Query: 67 RCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWK 123
+ + YE+ + N AW Y L + + D+ R +E AIS + W+
Sbjct: 309 KRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWR 365
Score = 28.1 bits (61), Expect = 3.6
Identities = 18/44 (40%), Positives = 21/44 (46%)
Query: 67 RCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAI 110
R RK +E L W KYA E E RARSI+E A+
Sbjct: 60 RKRKTFEDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWERAL 103
>CWF4_SCHPO (P87312) Cell cycle control protein cwf4
Length = 674
Score = 112 bits (280), Expect = 1e-25
Identities = 53/116 (45%), Positives = 75/116 (63%)
Query: 11 QKFSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRK 70
+KF+FA +WL+ A FE+RQ + A LG A+G PK K+ + YIE E + DRCR
Sbjct: 396 KKFTFAKLWLMYAMFELRQRKIDVARKTLGRALGMCPKPKLFRGYIEFEDAIKQFDRCRI 455
Query: 71 LYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLWKVNI 126
LYEK++ + E C W YA LE L ++DRAR+++ LA++QP + PEL+WK I
Sbjct: 456 LYEKWILYDPEACAPWLGYAALETKLGDSDRARALYNLAVNQPILETPELVWKAYI 511
Score = 65.9 bits (159), Expect = 2e-11
Identities = 34/96 (35%), Positives = 57/96 (58%), Gaps = 4/96 (4%)
Query: 14 SFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPK-DKILKKYIEIELQLGNIDRCRKLY 72
++ +WL + E++ N+ A + A+ + P+ DK+ KY+ +E LGNI CR+++
Sbjct: 102 TYIPLWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVF 161
Query: 73 EKYLEWAL-ENCYAWSKYA*LERSLSETDRARSIFE 107
E++L+W ENC W Y +ER E +RAR I+E
Sbjct: 162 ERWLKWEPDENC--WMSYIRMERRYHENERARGIYE 195
Score = 44.3 bits (103), Expect = 5e-05
Identities = 34/124 (27%), Positives = 56/124 (44%), Gaps = 11/124 (8%)
Query: 11 QKFSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDK---ILKKYIEIELQLGN--- 64
Q+F ++ A+FEIRQ + A I AI P+ K + K+Y E Q G+
Sbjct: 236 QEFLNERFFIAFAKFEIRQKEYERARTIFKYAIDFMPRSKSMELYKEYTHFEKQFGDHLG 295
Query: 65 -----IDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPE 119
+D+ R YEK L+ + + W LE S + + R +E AI++ + +
Sbjct: 296 VESTVLDKRRLQYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEKAIAKVPEVVEK 355
Query: 120 LLWK 123
W+
Sbjct: 356 NAWR 359
>MBB1_CHLRE (Q9FNS4) PsbB mRNA maturation factor Mbb1, chloroplast
precursor
Length = 662
Score = 42.0 bits (97), Expect = 2e-04
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 23 AQFEIRQLNLKGAHVILGSAIGKAPKDKIL-KKYIEIELQLGNIDRCRKLYEKYLEWALE 81
A +E RQ N + +L P D L + + +E Q G I+R R+L+E+ L
Sbjct: 346 ALWERRQGNPQHCLALLRRGCELNPTDPALYQAWALVEKQAGRIERARELFEQGLRADPS 405
Query: 82 NCYAWSKYA*LERSLSETDRARSIFE 107
+ Y W Y +E DRAR +F+
Sbjct: 406 DLYMWQAYGVMEAEQGNMDRARQLFQ 431
Score = 34.3 bits (77), Expect = 0.050
Identities = 17/55 (30%), Positives = 29/55 (51%)
Query: 58 IELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQ 112
+E + GN++R RKLY+ + + AW K+ LE+ RAR ++ I +
Sbjct: 205 LEARTGNVERARKLYDAAVVVDGTHACAWHKWGMLEKGQGNFTRARDLWMQGIQR 259
Score = 30.0 bits (66), Expect = 0.94
Identities = 22/101 (21%), Positives = 42/101 (40%), Gaps = 1/101 (0%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEI-ELQLGNIDRCRKLYEKYL 76
+W A E +Q + + A+G P+ + + + E + GN C L +
Sbjct: 307 LWQAWAVLEAKQGDPTVVRYLFRKALGANPRSRYVHLAWALWERRQGNPQHCLALLRRGC 366
Query: 77 EWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDM 117
E + + +A +E+ +RAR +FE + SD+
Sbjct: 367 ELNPTDPALYQAWALVEKQAGRIERARELFEQGLRADPSDL 407
Score = 29.6 bits (65), Expect = 1.2
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDK----ILKKYIEIELQLGNIDRCRKLYE 73
MW E Q N+ A + + P+ + + +E Q GN+ R+L++
Sbjct: 409 MWQAYGVMEAEQGNMDRARQLFQEGVWADPRSPSTVYVFHAWGALEWQAGNVQTARELFK 468
Query: 74 KYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQ 112
+ ++ W+ + +E L E +R + EL I Q
Sbjct: 469 AAVRVDPKSETTWASWIAMESELGEIER---VDELRIRQ 504
Score = 27.3 bits (59), Expect = 6.1
Identities = 15/52 (28%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Query: 60 LQLGNIDRCRKLYEK-YLEWALENCYAWSKYA*LERSLSETDRARSIFELAI 110
+Q D R+LY+ N Y WS + LE +RAR +++ A+
Sbjct: 172 VQQKRYDEARQLYQDGCANTGNVNPYIWSAWGWLEARTGNVERARKLYDAAV 223
>RRP5_YEAST (Q05022) rRNA biogenesis protein RRP5
Length = 1729
Score = 40.0 bits (92), Expect = 0.001
Identities = 27/109 (24%), Positives = 53/109 (47%), Gaps = 5/109 (4%)
Query: 9 TSQKFSF--ANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKD---KILKKYIEIELQLG 63
T++KF ++W+ F I + A ILG+A+ PK ++++K+ ++E G
Sbjct: 1573 TAKKFGGEKVSIWVSWGDFLISHNEEQEARTILGNALKALPKRNHIEVVRKFAQLEFAKG 1632
Query: 64 NIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQ 112
+ +R R L+E + A + W+ Y E + + +FE I++
Sbjct: 1633 DPERGRSLFEGLVADAPKRIDLWNVYVDQEVKAKDKKKVEDLFERIITK 1681
>RRP5_HUMAN (Q14690) RRP5 protein homolog (Programmed cell death
protein 11)
Length = 1871
Score = 40.0 bits (92), Expect = 0.001
Identities = 23/96 (23%), Positives = 43/96 (43%), Gaps = 3/96 (3%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDK---ILKKYIEIELQLGNIDRCRKLYEK 74
+W+ F +R+ +H +L A+ P + ++ K+ ++E QLG+ +R + ++E
Sbjct: 1727 VWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFEN 1786
Query: 75 YLEWALENCYAWSKYA*LERSLSETDRARSIFELAI 110
L + WS Y + R IFE I
Sbjct: 1787 TLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVI 1822
>PRPU_MOUSE (Q91YR7) U5 snRNP-associated 102 kDa protein (U5-102 kDa
protein)
Length = 941
Score = 37.7 bits (86), Expect = 0.004
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLE 77
+WL A + E + A +L A AP ++ K +++E LGNI ++L E+ L
Sbjct: 644 IWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNISAAQELCEEALR 703
Query: 78 WALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLW 122
+ W +E ++AR + + + P LW
Sbjct: 704 HYEDFPKLWMMKGQIEEQGELMEKAREAYNQGLKKCPHSTP--LW 746
>PRP1_SCHPO (Q12381) Pre-mRNA splicing factor prp1
Length = 906
Score = 37.0 bits (84), Expect = 0.008
Identities = 27/86 (31%), Positives = 44/86 (50%), Gaps = 2/86 (2%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKIL-KKYIEIELQLGNIDRCRKLYEKYL 76
+WLL A+ E +Q ++ A V+ A K PK++ L + I++EL+ GNI + R K L
Sbjct: 715 LWLLLAKLEEKQSVIR-ARVVFDRAKVKNPKNEFLWLELIKMELRAGNISQVRAALAKAL 773
Query: 77 EWALENCYAWSKYA*LERSLSETDRA 102
+ + W++ LE RA
Sbjct: 774 QECPSSGLLWTEAIWLEPRAQRKTRA 799
Score = 36.2 bits (82), Expect = 0.013
Identities = 31/95 (32%), Positives = 45/95 (46%), Gaps = 4/95 (4%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIG-KAPKDKILKKYIEIELQLGNIDRCRKLYEKY- 75
+WLL A+ ++ GA ILG A + ++I + IE +R RKL +
Sbjct: 580 LWLLYAKERKNVNDIAGARNILGRAFEYNSNSEEIWLAAVRIEFVNNENERARKLLARAR 639
Query: 76 LEWALENCYAWSKYA*LERSLSETDRARSIFELAI 110
+E E W+K LER L E DRA + E A+
Sbjct: 640 IESGTERI--WTKSISLERILDEKDRALQLLENAL 672
>CWF3_SCHPO (Q9P7R9) Cell cycle control protein cwf3
Length = 790
Score = 37.0 bits (84), Expect = 0.008
Identities = 28/128 (21%), Positives = 52/128 (39%), Gaps = 19/128 (14%)
Query: 16 ANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKD-------------------KILKKYI 56
A +W+ A+ E+R N A ++G A+ K KI Y+
Sbjct: 428 AQVWIDWAEMELRHQNFDAARKLIGDAVHAPRKSHISFFDESLSPQVRLHKSSKIWMYYL 487
Query: 57 EIELQLGNIDRCRKLYEKYLEWALENCYAWSKYA*LERSLSETDRARSIFELAISQPASD 116
++E +G I+ RKLY++ E + YA L + + + I+E ++ +
Sbjct: 488 DLEESVGTIETTRKLYDRVFELKIATPQVVVNYANLLEENAYFEDSFKIYERGVALFSYP 547
Query: 117 MPELLWKV 124
+ LW +
Sbjct: 548 VAFELWNL 555
Score = 27.3 bits (59), Expect = 6.1
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 48 KDKILKKYIEIELQLGNIDRCRKLY---EKYLEWALENCY--AWSKY 89
KD L+ + E+E +LG IDR R +Y +Y + +E Y AW ++
Sbjct: 661 KDMCLR-FAEMETKLGEIDRARLIYIHGSQYCDPRVETDYWKAWQEF 706
>PRP6_YEAST (P19735) Pre-mRNA splicing factor PRP6
Length = 899
Score = 33.1 bits (74), Expect = 0.11
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 26 EIRQLNLKG---AHVILGSAIGKAPKDKILK-KYIEIELQLGNIDRCRKLYEKYLEWALE 81
+I +++LK A IL + K P D + I++E++LGN+D+ L + L+
Sbjct: 710 KIDEIDLKNPVRARSILDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFPS 769
Query: 82 NCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELL 121
N W + L + +++ ++IF+ A+ + +D LL
Sbjct: 770 NALLWVEQIKLFKHGNKSSLKKTIFQDALRRTQNDHRVLL 809
>PRPU_HUMAN (O94906) U5 snRNP-associated 102 kDa protein (U5-102 kDa
protein)
Length = 941
Score = 32.0 bits (71), Expect = 0.25
Identities = 23/105 (21%), Positives = 41/105 (38%), Gaps = 2/105 (1%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLE 77
+WL A + E + A +L A AP ++ K +++E NI + L E+ L
Sbjct: 644 IWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQDLCEEALR 703
Query: 78 WALENCYAWSKYA*LERSLSETDRARSIFELAISQPASDMPELLW 122
+ W +E ++AR + + + P LW
Sbjct: 704 HYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTP--LW 746
>CNA2_HUMAN (Q9H7Z3) Protein C14orf102
Length = 1164
Score = 31.6 bits (70), Expect = 0.32
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 68 CRKLYEKYLEWALENCY---AWSKYA*LERSLSETDRARSIFELAISQPAS 115
C+KL + L+ ENC W +YA LE L T+ AR +F+ A+ S
Sbjct: 763 CKKLAKNLLKEP-ENCNNFCLWKQYAHLEWLLGNTEDARKVFDTALGMAGS 812
>ATX9_TETTH (Q95050) Probable cation-transporting ATPase 9 (EC
3.6.3.-)
Length = 1133
Score = 31.6 bits (70), Expect = 0.32
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 4 VSTLDTSQKFSFANMWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDKILKKYIEIELQLG 63
V++LD F F F I + +VI+ + IGK KD+ K I I LG
Sbjct: 982 VNSLDAENNFQFETQHNTVLNFNIL---INFFYVIISNHIGKPMKDRYYKNTIAIYYDLG 1038
Query: 64 NIDRCR 69
I C+
Sbjct: 1039 LIYTCK 1044
>CNA2_MOUSE (Q80XC6) Protein C14orf102 homolog
Length = 1172
Score = 31.2 bits (69), Expect = 0.42
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 68 CRKLYEKYLEWA--LENCYAWSKYA*LERSLSETDRARSIFELAISQPAS 115
C+KL + L+ N W +YA LE L T+ AR +F+ A+S S
Sbjct: 771 CKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARKVFDTALSMAGS 820
>WD17_HUMAN (Q8IZU2) WD-repeat protein 17
Length = 1322
Score = 30.0 bits (66), Expect = 0.94
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 40 GSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEW 78
G IG K++ LK+ EI L+LG I R +L + EW
Sbjct: 807 GGGIGVPAKEERLKEAAEIHLRLGQIQRYCELMVELGEW 845
>Y920_TREPA (O83890) Hypothetical protein TP0920
Length = 809
Score = 29.3 bits (64), Expect = 1.6
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 17 NMWL--LAAQFEIRQLNLKGAHVILGSAIGKAPKDKI-LKKYIEIELQLGNIDRCRKLYE 73
N WL L AQ +R+ N A L A P + + L+ YIE++ Q G + C L+E
Sbjct: 582 NGWLHNLCAQKALREQNFDAAAQSLQRARALLPHELVVLENYIELQRQRGALACCVPLFE 641
>PO5L_HUMAN (Q06416) POU domain, class 5, transcription factor
1-like protein 1 (Octamer binding protein 3-like)
Length = 359
Score = 28.5 bits (62), Expect = 2.7
Identities = 15/46 (32%), Positives = 25/46 (53%)
Query: 37 VILGSAIGKAPKDKILKKYIEIELQLGNIDRCRKLYEKYLEWALEN 82
+ILG GK K + ++ ++L NI + R L +K++E A N
Sbjct: 169 LILGVLFGKVFSQKTICRFEALQLSFKNICKLRPLLQKWVEEADNN 214
>NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplast
precursor
Length = 1385
Score = 28.5 bits (62), Expect = 2.7
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 18 MWLLAAQFEIRQLNLKGAHVILGSAIGKAPKDK-ILKKYIEIELQLGNIDRCRKLYEKYL 76
+++LAA E+ NL+ A A DK + + +E LG+ D+ R L+E+ L
Sbjct: 987 LYVLAASVELEASNLELAKGYCQRAYALDRTDKQLFLIWPRVEAGLGDRDKARLLFERAL 1046
Query: 77 EWALENCYAWSKYA*LERSLSETDRARSIFELAIS-QPASDMP 118
+ N + YA E A +++ A+ P S P
Sbjct: 1047 DAHPLNTKIINMYARFEAEEGSYREAAELYDRALQIDPLSPGP 1089
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.138 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,953,556
Number of Sequences: 164201
Number of extensions: 494413
Number of successful extensions: 1699
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1590
Number of HSP's gapped (non-prelim): 75
length of query: 128
length of database: 59,974,054
effective HSP length: 104
effective length of query: 24
effective length of database: 42,897,150
effective search space: 1029531600
effective search space used: 1029531600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0060.17