BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0060.15
(372 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun... 40 0.007
RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun... 40 0.012
RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun... 40 0.012
AF4_HUMAN (P51825) AF-4 protein (Proto-oncogene AF4) (FEL protein) 38 0.036
PCLO_RAT (Q9JKS6) Piccolo protein (Multidomain presynaptic cytom... 38 0.047
EXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precur... 37 0.11
EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein) 36 0.18
SPEN_DROME (Q8SX83) Split ends protein 35 0.31
GDB2_WHEAT (P08453) Gamma-gliadin precursor 35 0.31
MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia p... 35 0.40
YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I 34 0.52
POLR_TYMV (P10358) RNA replicase polyprotein (EC 2.7.7.48) 34 0.52
ZIPA_SALTY (P55894) Cell division protein zipA 34 0.68
SOS1_MOUSE (Q62245) Son of sevenless protein homolog 1 (SOS-1) (... 34 0.68
SOS1_HUMAN (Q07889) Son of sevenless protein homolog 1 (SOS-1) 34 0.68
PCLO_MOUSE (Q9QYX7) Piccolo protein (Presynaptic cytomatrix prot... 34 0.68
MUC2_HUMAN (Q02817) Mucin 2 precursor (Intestinal mucin 2) 34 0.68
PCLO_CHICK (Q9PU36) Piccolo protein (Aczonin) (Fragment) 33 0.89
RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun... 33 1.2
D2DR_FUGRU (P53453) D(2)-like dopamine receptor 33 1.2
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RPB1)
Length = 1970
Score = 40.4 bits (93), Expect = 0.007
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 10/124 (8%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGG--FHNQPPPRTSSFSSFFP 124
P YTP + +P+ P S P + +SP + + Q P T S S+ P
Sbjct: 1771 PTSPNYTPTSPNYSPTSPSYSPTSPS---YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSP 1827
Query: 125 RSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGY 184
S S++PT+ + S S P T A PK + K +PK T+PT
Sbjct: 1828 SS----PSYSPTSPKYTPTSPSYS-PSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYS 1882
Query: 185 PQNP 188
P P
Sbjct: 1883 PTTP 1886
Score = 39.3 bits (90), Expect = 0.016
Identities = 31/125 (24%), Positives = 50/125 (39%), Gaps = 13/125 (10%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPRS 126
P +Y+P + +PS P R PQ + SSP + P + S+S P+
Sbjct: 1792 PTSPSYSPTSPSYSPSSP---RYTPQSPTYTPSSPSYS---------PSSPSYSPTSPKY 1839
Query: 127 VSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGYPQ 186
S++P++ + S P + PK + TPK T+PT P
Sbjct: 1840 TPTSPSYSPSSPEYTPASPKYS-PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPT 1898
Query: 187 NPIKT 191
+P+ T
Sbjct: 1899 SPVYT 1903
Score = 36.6 bits (83), Expect = 0.11
Identities = 31/127 (24%), Positives = 47/127 (36%), Gaps = 9/127 (7%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPP-----PRTSSFSS 121
P YTP++ +PS P S P K+ +SP + P P + +S
Sbjct: 1813 PQSPTYTPSSPSYSPSSPSYSPTSP---KYTPTSPSYSPSSPEYTPASPKYSPTSPKYSP 1869
Query: 122 FFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTP 181
P+ +++PT P T P T PK + +PK T+P
Sbjct: 1870 TSPKYSPTSPTYSPTT-PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSP 1928
Query: 182 TGYPQNP 188
T P +P
Sbjct: 1929 TYSPTSP 1935
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RPB1)
Length = 1970
Score = 39.7 bits (91), Expect = 0.012
Identities = 32/125 (25%), Positives = 50/125 (39%), Gaps = 13/125 (10%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPRS 126
P +Y+P + +PS P R PQ + SSP + P + S+S P+
Sbjct: 1792 PTSPSYSPTSPSYSPSSP---RYTPQSPTYTPSSPSYS---------PSSPSYSPTSPKY 1839
Query: 127 VSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGYPQ 186
S++P++ P T P + PK + TPK T+PT P
Sbjct: 1840 TPTSPSYSPSS-PEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPT 1898
Query: 187 NPIKT 191
+P+ T
Sbjct: 1899 SPVYT 1903
Score = 38.9 bits (89), Expect = 0.021
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGG--FHNQPPPRTSSFSSFFP 124
P YTP + +P+ P S P + +SP + + Q P T S S+ P
Sbjct: 1771 PTSPNYTPTSPNYSPTSPSYSPTSPS---YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSP 1827
Query: 125 RSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGY 184
S S++PT+ + S S P T PK + K +PK T+PT
Sbjct: 1828 SS----PSYSPTSPKYTPTSPSYS-PSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYS 1882
Query: 185 PQNP 188
P P
Sbjct: 1883 PTTP 1886
Score = 36.6 bits (83), Expect = 0.11
Identities = 31/127 (24%), Positives = 47/127 (36%), Gaps = 9/127 (7%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPP-----PRTSSFSS 121
P YTP++ +PS P S P K+ +SP + P P + +S
Sbjct: 1813 PQSPTYTPSSPSYSPSSPSYSPTSP---KYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSP 1869
Query: 122 FFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTP 181
P+ +++PT P T P T PK + +PK T+P
Sbjct: 1870 TSPKYSPTSPTYSPTT-PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSP 1928
Query: 182 TGYPQNP 188
T P +P
Sbjct: 1929 TYSPTSP 1935
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RPB1) (Fragment)
Length = 467
Score = 39.7 bits (91), Expect = 0.012
Identities = 32/125 (25%), Positives = 50/125 (39%), Gaps = 13/125 (10%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPRS 126
P +Y+P + +PS P R PQ + SSP + P + S+S P+
Sbjct: 289 PTSPSYSPTSPSYSPSSP---RYTPQSPTYTPSSPSYS---------PSSPSYSPTSPKY 336
Query: 127 VSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGYPQ 186
S++P++ P T P + PK + TPK T+PT P
Sbjct: 337 TPTSPSYSPSS-PEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPT 395
Query: 187 NPIKT 191
+P+ T
Sbjct: 396 SPVYT 400
Score = 38.9 bits (89), Expect = 0.021
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGG--FHNQPPPRTSSFSSFFP 124
P YTP + +P+ P S P + +SP + + Q P T S S+ P
Sbjct: 268 PTSPNYTPTSPNYSPTSPSYSPTSPS---YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSP 324
Query: 125 RSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGY 184
S S++PT+ + S S P T PK + K +PK T+PT
Sbjct: 325 SS----PSYSPTSPKYTPTSPSYS-PSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYS 379
Query: 185 PQNP 188
P P
Sbjct: 380 PTTP 383
Score = 36.6 bits (83), Expect = 0.11
Identities = 31/127 (24%), Positives = 47/127 (36%), Gaps = 9/127 (7%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPP-----PRTSSFSS 121
P YTP++ +PS P S P K+ +SP + P P + +S
Sbjct: 310 PQSPTYTPSSPSYSPSSPSYSPTSP---KYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSP 366
Query: 122 FFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTP 181
P+ +++PT P T P T PK + +PK T+P
Sbjct: 367 TSPKYSPTSPTYSPTT-PKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSP 425
Query: 182 TGYPQNP 188
T P +P
Sbjct: 426 TYSPTSP 432
>AF4_HUMAN (P51825) AF-4 protein (Proto-oncogene AF4) (FEL protein)
Length = 1210
Score = 38.1 bits (87), Expect = 0.036
Identities = 26/97 (26%), Positives = 40/97 (40%), Gaps = 8/97 (8%)
Query: 68 VDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQ---PPPRTSSFSSFFP 124
+D T ++ P + +S P++H K S H++ PPP++SS + P
Sbjct: 515 LDNWLTKVSQPAAPPEGPRSTEPPRRHPESKGSSDSATSQEHSESKDPPPKSSSKAPRAP 574
Query: 125 RSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPK 161
HP + P QQ PQRQ + PK
Sbjct: 575 PEAPHPGKRSCQKSPAQQEP-----PQRQTVGTKQPK 606
>PCLO_RAT (Q9JKS6) Piccolo protein (Multidomain presynaptic
cytomatrix protein)
Length = 5085
Score = 37.7 bits (86), Expect = 0.047
Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 13/165 (7%)
Query: 56 PTRVGKFYFGPPVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPR 115
PT+ GP A P +P QP ++ QPQQ K+ P ++ +P P+
Sbjct: 372 PTKTPAQQSGPGKTPAQQPGPTKPSPQQPIPAKPQPQQPVATKTQPQQSAPA---KPQPQ 428
Query: 116 TSSFSSFFPR--SVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACP---KMATQKRKQQ 170
+ + P+ + + P PT Q + + + PQ Q T P + K Q
Sbjct: 429 QPAPAKPQPQQPTPAKPQPQPPTPAKPQPQPPTATKPQPQPPTATKPHHQQPGLAKPSAQ 488
Query: 171 TPTPKTHKTTPTGYPQNPIKTYPLRIYVQVAVAGLGAHCGVVCDT 215
PT K+ T TG P P P Q GL +C+T
Sbjct: 489 QPT-KSISQTVTGRPLQP----PPTSAAQTPAQGLSKTICPLCNT 528
Score = 33.1 bits (74), Expect = 1.2
Identities = 33/134 (24%), Positives = 46/134 (33%), Gaps = 10/134 (7%)
Query: 55 VPTRVGKFYFGPPVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPP 114
V T+ P Q PA P QP ++ QPQ K P + QP P
Sbjct: 411 VATKTQPQQSAPAKPQPQQPAPAKPQPQQPTPAKPQPQPPTPAKPQP-QPPTATKPQPQP 469
Query: 115 RTSSFSSFFPRSVSHPSSHNP--------TNKPLQQRTLSLSLPQRQALTNA-CPKMATQ 165
T++ ++ PS+ P T +PLQ S + Q L+ CP T
Sbjct: 470 PTATKPHHQQPGLAKPSAQQPTKSISQTVTGRPLQPPPTSAAQTPAQGLSKTICPLCNTT 529
Query: 166 KRKQQTPTPKTHKT 179
+ P T
Sbjct: 530 ELLLHIPEKANFNT 543
>EXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor
(PELP)
Length = 426
Score = 36.6 bits (83), Expect = 0.11
Identities = 43/150 (28%), Positives = 57/150 (37%), Gaps = 25/150 (16%)
Query: 49 YAGLL-MVPTR--VGKFYFGPPVDQAY--TPAAEVRNPSQPQKSRIQPQQHKHCKSSPLE 103
+AGLL ++P V GPPV+Q +P+ V+ P P CK SP +
Sbjct: 112 FAGLLPLIPNLPDVPPIGGGPPVNQPKPSSPSPLVKPPPPPPSP---------CKPSPPD 162
Query: 104 NDGGFHNQPPPRTSSFSSFFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMA 163
QPPP P V PS +P +P P + P A
Sbjct: 163 QSAKQPPQPPPAKQPSPPPPPPPVKAPSP-SPAKQPP---------PPPPPVKAPSPSPA 212
Query: 164 TQKRKQQTPTPKTHKTTPTGYPQNPIKTYP 193
TQ +Q P P K +P P P+ YP
Sbjct: 213 TQPPTKQPPPPPRAKKSPLLPPPPPV-AYP 241
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)
Length = 283
Score = 35.8 bits (81), Expect = 0.18
Identities = 36/167 (21%), Positives = 58/167 (34%), Gaps = 21/167 (12%)
Query: 41 LFVAVSMVYAGLLMVPTRVGKFYFGPPVDQAYTPAAEVRNPSQP------QKSRIQPQQH 94
L +A+ V ++ + G Y G P A+ P +P K P++H
Sbjct: 8 LLLALVAVTLAVVEIQADAGYGYGGGYPTPTPKPPAKGPKPEKPPTKGHGHKPEKPPKEH 67
Query: 95 KHCK-------------SSPLENDGGFHNQPPPRTSSFSSFFPRSVSHPSSHNPTNKPLQ 141
K ++P + P P++ + P S P ++ P+ KP
Sbjct: 68 KPTPPTYTPSPKPTPPPATPKPTPPTYTPSPKPKSPVYPP--PPKASTPPTYTPSPKPPA 125
Query: 142 QRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGYPQNP 188
+ + P+ A P + T K P T K TP Y NP
Sbjct: 126 TKPPTYPTPKPPATKPPTPPVYTPSPKPPVTKPPTPKPTPPVYTPNP 172
>SPEN_DROME (Q8SX83) Split ends protein
Length = 5560
Score = 35.0 bits (79), Expect = 0.31
Identities = 37/158 (23%), Positives = 59/158 (36%), Gaps = 23/158 (14%)
Query: 54 MVPTRVGKFYFGPPVDQAYTPAAEVRNPSQPQKSRIQPQQHKHC---------KSSPLEN 104
M P R + P + P EV +P + K+ +Q +H+ L+
Sbjct: 3359 MEPEREAEPDPDPEAEIESEPVVEVLDPEELNKA-VQSLKHEDMMDIKADTPQSERDLQI 3417
Query: 105 DGGFHNQPPPRTSSFSSF----FPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACP 160
D P SS S +S S P N P + T ++ +P ++ P
Sbjct: 3418 DTDTEENPDEADSSGPSLKIDETVQSSSSPEKSISNNSPTPRETANIDIPNVESQ----P 3473
Query: 161 KMATQKRKQQTPTPK-----THKTTPTGYPQNPIKTYP 193
K++ + Q + K T KT P G P +P+K P
Sbjct: 3474 KLSNESTPQPSVITKLPFLDTPKTVPAGLPPSPVKIEP 3511
>GDB2_WHEAT (P08453) Gamma-gliadin precursor
Length = 327
Score = 35.0 bits (79), Expect = 0.31
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 16/122 (13%)
Query: 72 YTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPRSVSHPS 131
+ P +V P QPQ+ +QPQQ P QP P+T FP+ P
Sbjct: 61 HQPQQQVPQPQQPQQPFLQPQQ-------PFPQQ---PQQPFPQTQQPQQPFPQQPQQPF 110
Query: 132 SHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGYPQNPIKT 191
+ + PQ Q P Q ++ Q P P+ + P PQ P ++
Sbjct: 111 PQTQQPQQPFPQQPQQPFPQTQQPQQPFP----QLQQPQQPFPQPQQQLP--QPQQPQQS 164
Query: 192 YP 193
+P
Sbjct: 165 FP 166
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia
protein 4 (Trithorax homolog 2)
Length = 2715
Score = 34.7 bits (78), Expect = 0.40
Identities = 46/194 (23%), Positives = 72/194 (36%), Gaps = 21/194 (10%)
Query: 91 PQQHKHCKS--SPLENDGGFHNQPPPRTSSFSSFFPRSVSHPSSHNPTN--------KPL 140
P++H ++ PL D G + PPP SFS + ++ S P P
Sbjct: 1832 PERHSPIQNLDPPLRPDSG--SAPPPAPRSFSGARIKVPNYSPSRRPLGGVSFGPLPSPG 1889
Query: 141 QQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGYPQNPIKTYP-LRIYVQ 199
+L+ +P T P R+ + P+P + P+ + P+KT P LR+
Sbjct: 1890 SPSSLTHHIP-----TVGDPDFPAPPRRSRRPSPLAPRPPPSRWASPPLKTSPQLRVPPP 1944
Query: 200 VAVAGLGAHCGVVCDTAAEAGSEDEKEDRWCDSGNRAFQVGEGLIAGD-GFVTELLEVQR 258
+V A S ED D + +V GL A D F LL +
Sbjct: 1945 TSVVTALTPTSGELAPPGPAPSPPPPEDLGPDFED--MEVVSGLSAADLDFAASLLGTEP 2002
Query: 259 LDEDLEGKERLGRS 272
E++ +G S
Sbjct: 2003 FQEEIVAAGAMGSS 2016
Score = 30.8 bits (68), Expect = 5.8
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 18/122 (14%)
Query: 69 DQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPRSVS 128
D+ P++ +R+ + Q+ R + + K++PL PPPR + + P++ +
Sbjct: 129 DEDVAPSS-LRSALRSQRGRAPRGRGRKHKTTPL---------PPPRLADVAPTPPKTPA 178
Query: 129 HPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGYPQNP 188
T + +Q T + L A A + R + TP+ + P G P P
Sbjct: 179 RKRGEEGTERMVQALT--------ELLRRAQAPQAPRSRACEPSTPRRSRGRPPGRPAGP 230
Query: 189 IK 190
+
Sbjct: 231 CR 232
>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I
Length = 1794
Score = 34.3 bits (77), Expect = 0.52
Identities = 37/145 (25%), Positives = 50/145 (33%), Gaps = 8/145 (5%)
Query: 54 MVPTRVGKFYFGPPVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPP 113
M+P R G P + Q P P PQ++ +QPQ + G P
Sbjct: 617 MMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQRTGMQPQM-PGMQQPMAPQRTGMQPMAP 675
Query: 114 PRTSSFSSFFPRSVSHPSSHNPTNKPLQQRT-LSLSLPQRQALTNACP----KMATQKRK 168
RT R+ P QRT + +PQR + P MA Q+
Sbjct: 676 QRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTG 735
Query: 169 QQTPTPKTHKTTP--TGYPQNPIKT 191
Q P+ P TG P P +T
Sbjct: 736 MQPMAPQRTGMQPQMTGGPMLPQRT 760
Score = 32.0 bits (71), Expect = 2.6
Identities = 29/124 (23%), Positives = 43/124 (34%), Gaps = 17/124 (13%)
Query: 54 MVPTRVGKFYFGPPVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPP 113
MVP R G P + Q P P PQ++ +QPQ GF
Sbjct: 512 MVPQRTGMQPMMPGLQQPMAPQRTGMQPMMPQRTGMQPQM------------TGFQQPMA 559
Query: 114 PRTSSFSSFFPRSVSHPSSHNPTNKPL--QQRTLSLSLPQRQALTNACPKMATQKRKQQT 171
P+ + P+ +P+ Q+ + +PQR T MA Q+ Q
Sbjct: 560 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQR---TGMQQPMAPQRTGMQP 616
Query: 172 PTPK 175
P+
Sbjct: 617 MMPQ 620
>POLR_TYMV (P10358) RNA replicase polyprotein (EC 2.7.7.48)
Length = 1844
Score = 34.3 bits (77), Expect = 0.52
Identities = 33/153 (21%), Positives = 53/153 (34%), Gaps = 12/153 (7%)
Query: 55 VPTRVGKFYFGPPVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPP 114
+P + P A +P A+ + + I+P Q H ++S L + +PPP
Sbjct: 592 LPPAFASTFVPRPPPAASSPGAQPPTTTAAPPTPIEPTQRTH-QNSDLALESSTSTEPPP 650
Query: 115 RTSSFSSFFPRS-VSHPSSHNPTNKPLQQRTLS----------LSLPQRQALTNACPKMA 163
P + V P ++P P Q LS+P + +A P M
Sbjct: 651 PPIRSPDMTPSAPVLFPEINSPRRFPPQLPATPDLEPAHTPPPLSIPHQDPTDSADPLMG 710
Query: 164 TQKRKQQTPTPKTHKTTPTGYPQNPIKTYPLRI 196
+ P P TH + P+ P I
Sbjct: 711 SHLLHHSLPAPPTHPLPSSQLLPAPLTNDPTAI 743
>ZIPA_SALTY (P55894) Cell division protein zipA
Length = 328
Score = 33.9 bits (76), Expect = 0.68
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 15/99 (15%)
Query: 90 QPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPRSVSHPSSHNPTNKPLQQRTLSLSL 149
Q Q+H + SP H PP ++S PR + P P +P+QQ
Sbjct: 77 QSQEHDAPRQSPQ------HQYQPP----YASAQPRPAAPPQPQAPMQQPVQQPVQPAPQ 126
Query: 150 PQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGYPQNP 188
PQ+ P + QQ P P + P P P
Sbjct: 127 PQQ-----VQPSAPPVQPPQQQPAPPSQAPQPVAQPAPP 160
>SOS1_MOUSE (Q62245) Son of sevenless protein homolog 1 (SOS-1)
(mSOS-1)
Length = 1319
Score = 33.9 bits (76), Expect = 0.68
Identities = 33/138 (23%), Positives = 56/138 (39%), Gaps = 23/138 (16%)
Query: 67 PVDQAYTPAAEVRNP---SQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPP---RTSSFS 120
P +AY+P + + S P +S + ++ + + H QPPP ++ +
Sbjct: 1173 PTSKAYSPRYSISDRTSISDPPESPPLLPPREPVRTPDVFSSSPLHLQPPPLGKKSDHGN 1232
Query: 121 SFFPRSVSH--------PSSHNPT----NKPLQQRTLSLSL-----PQRQALTNACPKMA 163
+FFP S S PS H + PL Q S+ P RQ+ + PK+
Sbjct: 1233 AFFPNSPSPFTPPPPQTPSPHGTRRHLPSPPLTQEMDLHSIAGPPVPPRQSTSQLIPKLP 1292
Query: 164 TQKRKQQTPTPKTHKTTP 181
+ K++ P H+ P
Sbjct: 1293 PKTYKREHTHPSMHRDGP 1310
>SOS1_HUMAN (Q07889) Son of sevenless protein homolog 1 (SOS-1)
Length = 1333
Score = 33.9 bits (76), Expect = 0.68
Identities = 33/138 (23%), Positives = 56/138 (39%), Gaps = 23/138 (16%)
Query: 67 PVDQAYTPAAEVRNP---SQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPP---RTSSFS 120
P +AY+P + + S P +S + ++ + + H QPPP ++ +
Sbjct: 1187 PTSKAYSPRYSISDRTSISDPPESPPLLPPREPVRTPDVFSSSPLHLQPPPLGKKSDHGN 1246
Query: 121 SFFPRSVSH--------PSSHNPT----NKPLQQRTLSLSL-----PQRQALTNACPKMA 163
+FFP S S PS H + PL Q S+ P RQ+ + PK+
Sbjct: 1247 AFFPNSPSPFTPPPPQTPSPHGTRRHLPSPPLTQEVDLHSIAGPPVPPRQSTSQHIPKLP 1306
Query: 164 TQKRKQQTPTPKTHKTTP 181
+ K++ P H+ P
Sbjct: 1307 PKTYKREHTHPSMHRDGP 1324
>PCLO_MOUSE (Q9QYX7) Piccolo protein (Presynaptic cytomatrix
protein) (Aczonin) (Brain-derived HLMN protein)
Length = 5038
Score = 33.9 bits (76), Expect = 0.68
Identities = 35/133 (26%), Positives = 45/133 (33%), Gaps = 10/133 (7%)
Query: 56 PTRVGKFYFGPPVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPR 115
PT+ GP A P +P QP ++ QPQQ K P QP P
Sbjct: 371 PTKTPAQLSGPGKTPAQQPGPTKPSPQQPIPAKPQPQQPVATKPQP--------QQPAPA 422
Query: 116 TSSFSSFFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPK 175
P + P P QQ T + PQ L + + K QT T +
Sbjct: 423 KPQPQHPTP-AKPQPQQPTPAKPQPQQPTPAKPQPQHPGLGKPSAQQPS-KSISQTVTGR 480
Query: 176 THKTTPTGYPQNP 188
+ PT Q P
Sbjct: 481 PLQAPPTSAAQAP 493
>MUC2_HUMAN (Q02817) Mucin 2 precursor (Intestinal mucin 2)
Length = 5179
Score = 33.9 bits (76), Expect = 0.68
Identities = 42/167 (25%), Positives = 61/167 (36%), Gaps = 23/167 (13%)
Query: 65 GPPVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFP 124
GPP + P AE+ + P +S Q SSPL + PP S+ P
Sbjct: 4196 GPPTHTSTAPIAELTTSNPPPES--STPQTSRSTSSPLTESTTLLSTLPPAIEMTSTAPP 4253
Query: 125 RSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKT----- 179
+ + P++ + + + + S P P T PTP T +T
Sbjct: 4254 STPTAPTTTSGGHTLSPPPSTTTSPP-------GTPTRGTTTGSSSAPTPSTVQTTTTSA 4306
Query: 180 -TPTGYPQNP---IKTYPLRIYVQVAVAGLGAHCGVVCDTAAEAGSE 222
TPT P + I+T LR Y + C V+ DT G E
Sbjct: 4307 WTPTPTPLSTPSIIRTTGLRPYPSSVLI-----CCVLNDTYYAPGEE 4348
>PCLO_CHICK (Q9PU36) Piccolo protein (Aczonin) (Fragment)
Length = 5120
Score = 33.5 bits (75), Expect = 0.89
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 110 NQPPPRTSSFSSFFPRSVSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQ 169
+ P P T+ P + +HP+ P +KPL Q + S P+ + + A TQK +
Sbjct: 570 DSPMPETTK-----PPADTHPAGDKPDSKPLPQVSRQKSDPKLASQSGAKSDAKTQKPSE 624
Query: 170 QTPT---PKTHKTTPTGYP 185
P PK +T P P
Sbjct: 625 PAPVKDDPKKLQTKPAPKP 643
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6)
Length = 1852
Score = 33.1 bits (74), Expect = 1.2
Identities = 29/122 (23%), Positives = 47/122 (37%), Gaps = 14/122 (11%)
Query: 67 PVDQAYTPAAEVRNPSQPQKSRIQPQQHKHCKSSPLENDGGFHNQPPPRTSSFSSFFPRS 126
P Y+P + +P+ PQ S PQ + SSP P + +++ PR
Sbjct: 1725 PSSPTYSPTSPSYSPTSPQYSPTSPQ---YSPSSPTYT---------PSSPTYNPTSPRG 1772
Query: 127 VSHPSSHNPTNKPLQQRTLSLSLPQRQALTNACPKMATQKRKQQTPTPKTHKTTPTGYPQ 186
S P ++PT+ P T P + P +Q + + T+PT P
Sbjct: 1773 FSSP-QYSPTS-PTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPS 1830
Query: 187 NP 188
+P
Sbjct: 1831 SP 1832
>D2DR_FUGRU (P53453) D(2)-like dopamine receptor
Length = 463
Score = 33.1 bits (74), Expect = 1.2
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 106 GGFHNQPPPRTSSFSSFFPRSVSH-----------PSSHNPTNKPLQQRTLSLSLPQRQA 154
GG H QPPP+ + + SH P+S PT QRT P ++A
Sbjct: 296 GGSHKQPPPQQQPRALGDTPATSHQLLMSTKANASPTSTPPTPPEEGQRTEKNGDPTKEA 355
Query: 155 LTNACPKMATQKRKQQT 171
N P +A + K QT
Sbjct: 356 QGNPAPVVALRNGKTQT 372
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,187,999
Number of Sequences: 164201
Number of extensions: 2266064
Number of successful extensions: 6511
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 6356
Number of HSP's gapped (non-prelim): 175
length of query: 372
length of database: 59,974,054
effective HSP length: 112
effective length of query: 260
effective length of database: 41,583,542
effective search space: 10811720920
effective search space used: 10811720920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0060.15