BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0060.14
(651 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog 154 5e-37
YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein ... 154 9e-37
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog 143 1e-33
POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains... 139 2e-32
POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type... 83 3e-15
PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type... 82 6e-15
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type... 75 4e-13
M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310... 62 6e-09
YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III 58 7e-08
MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250... 58 7e-08
PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type... 55 8e-07
PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type... 54 1e-06
RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile elem... 54 2e-06
PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type... 54 2e-06
Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I retro... 40 0.019
WD17_HUMAN (Q8IZU2) WD-repeat protein 17 37 0.21
NCAP_VSVJO (P04881) Nucleocapsid protein (Nucleoprotein) 35 0.47
RTP2_TRYBG (P15594) Retrotransposable element SLACS 132 kDa prot... 34 1.1
EXC7_HUMAN (Q9UPT5) Exocyst complex component 7 (Exocyst complex... 34 1.1
NTRC_KLEPN (P03029) Nitrogen assimilation regulatory protein 34 1.4
>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
Length = 1260
Score = 154 bits (390), Expect = 5e-37
Identities = 145/628 (23%), Positives = 264/628 (41%), Gaps = 50/628 (7%)
Query: 35 KEKLKGLRGRLKDWNKAVFGDLTTRREEVVQKINILDVKEEETGLSQEEVATRESLLFDF 94
+E++ L G LK K + R + + KI ++ E E +++ +S F+
Sbjct: 310 REEVNNLMGHLKQLEKEEHSNPKPSRRKEITKIRA-ELNEIENKRIIQQINKSKSWFFEK 368
Query: 95 WTVLRHHESLLCQKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGLWVEGVWEEDPSRVK 154
+ + L +K R + L +N +T DPS ++
Sbjct: 369 INKIDKPLANLTRKKRVKSLISSIRNGNDEITT---------------------DPSEIQ 407
Query: 155 AAVESFFEAKFKSDV*DRPR----LEGVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGN 210
+ +++ + + LE LS + +L P+ EI +
Sbjct: 408 KILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQKEVEMLNRPISSSEIASTIQNLPKK 467
Query: 211 KSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNS-PQPLN 269
KSPGPDGF F + F + L ++ + + G + I LIPK P
Sbjct: 468 KSPGPDGFTSEFYQTFKEELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTRKE 527
Query: 270 EFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFV-GNRNMLDSVVVLNEVIHEVK 328
+RPISL+ K+++K+L R+ + K+I Q F+ G++ + +N + H K
Sbjct: 528 NYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINK 587
Query: 329 RKKQPSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPT 388
K + +I +D EKA+D + F+ + ++ ++ I + ++++NG
Sbjct: 588 LKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKL 647
Query: 389 GEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSK-FKGVKVGADTGLEVSLLQFA 447
F + G RQG PL+P LF V E + ++R K KG+ +G++ E+ L FA
Sbjct: 648 KSFPLRSGTRQGCPLSPLLFNIVME----VLAIAIREEKAIKGIHIGSE---EIKLSLFA 700
Query: 448 DDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCKV 507
DD + E T + L +++ + VSG K+N HKS + V
Sbjct: 701 DDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSIPFTV 760
Query: 508 MTIPFVYLGIPVGARASCL--KTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALP 565
+ YLG+ + L + +E + K++ + WK S+ GRI +++ +S LP
Sbjct: 761 VPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVK--MSILP 818
Query: 566 LIFLSF----FRIPACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKD 621
+F + P K +I+ F+W K+ K L + GG+ + D
Sbjct: 819 KAIYNFNAIPIKAPLSYFKDLEKIILHFIWNQ----KKPQIAKTL-LSNKNKAGGITLPD 873
Query: 622 LDLFNRSLLGKWLWRWRTKKQA-LWCQV 648
L L+ +S++ K W W ++ +W ++
Sbjct: 874 LRLYYKSIVIKTAWYWHKNREVDVWNRI 901
>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein
(ORF 2)
Length = 1308
Score = 154 bits (388), Expect = 9e-37
Identities = 159/619 (25%), Positives = 279/619 (44%), Gaps = 63/619 (10%)
Query: 5 NCWLDDPRITTVVTSTWKDMKVKGWGSY------------VLKEKLKGLRGRLKDWNKAV 52
N L+D V TW+ GW ++ V K LK L +++ K+V
Sbjct: 253 NSLLEDEGFAKSVRDTWR-----GWRAFQDEFATLNQWWDVGKVHLKLL---CQEYTKSV 304
Query: 53 FGDLTTRREEVVQKIN--ILDVKEEETGLSQEEVATRESLLFDFWTVLRHHESLLCQ--- 107
G +R ++ +N +LD+++ +G S+++ E L + LR+ E +
Sbjct: 305 SG----QRNAEIEALNGEVLDLEQRLSG-SEDQALQCEYL--ERKEALRNMEQRQARGAF 357
Query: 108 -KARSRWLAEGDQNSGFFHSTINWKRRTNSIVGLWVE-GVWEEDPSRVKAAVESFFEAKF 165
++R + L + D+ S FF++ K I L+ E G EDP ++ SF++ F
Sbjct: 358 VRSRMQLLCDMDRGSRFFYALEKKKGNRKQITCLFAEDGTPLEDPEAIRDRARSFYQNLF 417
Query: 166 KSDV*DRPRLE----GVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPGPDGFNFR 221
D E G+P +S+ L P+ E+ A+ NKSPG DG
Sbjct: 418 SPDPISPDACEELWDGLP--VVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIE 475
Query: 222 FIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNEFRPISLIGCIY 281
F + FWD L D + + E +++G C + + L+PK + + +RP+SL+ Y
Sbjct: 476 FFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDY 535
Query: 282 KVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKRKKQPSIIFKVDY 341
K+++K ++ RL +V+ +VI Q V R + D+V ++ +++H +R +D
Sbjct: 536 KIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFARRTGLSLAFLSLDQ 595
Query: 342 EKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGD 401
EKA+D VD +L + +F +++ ++ SA V +N S T RG+RQG
Sbjct: 596 EKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGC 655
Query: 402 PLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFADDTVFLGEATIQNL 461
PL+ L+ E L + RL+ V + + V L +ADD + + Q+L
Sbjct: 656 PLSGQLYSLAIEPFLCLLRK--RLTGL----VLKEPDMRVVLSAYADDVILVA----QDL 705
Query: 462 VSLKCILRCFEL---VSGLKVNFHKSKLAAIAIETGVAHQF--ASFLNCKVMTIPFVYLG 516
V L+ C E+ S ++N+ KS + +E + F +F + + YLG
Sbjct: 706 VDLERAQECQEVYAAASSARINWSKS---SGLLEGSLKVDFLPPAFRDISWESKIIKYLG 762
Query: 517 IPVGARA-SCLKTWEPVIKKMRNRLALWK--QKLISFGGRICLI-QSVLSALPLIFLSFF 572
+ + A + + + + + RL WK K++S GR +I Q V S + +
Sbjct: 763 VYLSAEEYPVSQNFIELEECVLTRLGKWKGFAKVLSMRGRALVINQLVASQIWYRLICLS 822
Query: 573 RIPACVVKVCNRIMRDFLW 591
+ K+ R++ DFLW
Sbjct: 823 PTQEFIAKIQRRLL-DFLW 840
>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
Length = 1259
Score = 143 bits (361), Expect = 1e-33
Identities = 134/616 (21%), Positives = 262/616 (41%), Gaps = 49/616 (7%)
Query: 35 KEKLKGLRGRLKDWNKAVFGDLTTRREEVVQKINILDVKEEETGLSQEEVATRESLLFDF 94
+ K+ L +LK+ K + R + + KI ++KE ET + +++ S F+
Sbjct: 310 RSKIDTLISQLKELEKQEQTNSKASRRQEIIKIRA-ELKEIETQKTLQKINESRSWFFEK 368
Query: 95 WTVLRHHESLLCQKARSRWLAEGDQNSGFFHSTINWKRRTNSIVGLWVEGVWEEDPSRVK 154
+ + L +K R + + +N G DP+ ++
Sbjct: 369 INKIDRPLARLIKKKREKNQIDTIKND---------------------RGDITTDPTEIQ 407
Query: 155 AAVESFFEAKFKSDV*DRPR----LEGVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGN 210
+ +++ + + + + L+ L+ + L P+ EI+ + +
Sbjct: 408 TTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITSSEIEAIINSLPNK 467
Query: 211 KSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNE 270
KSPGP+GF F +++ + L ++K + + G + I+LIPK E
Sbjct: 468 KSPGPEGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKE 527
Query: 271 -FRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKR 329
FRPISL+ K+++K+LA ++ + K+I Q F+ ++ +I + R
Sbjct: 528 NFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIPAMQGWFNIRKSINIIQHINR 587
Query: 330 KKQPS-IIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPT 388
K + +I +D EKA+D + F+ + ++ ++ I + ++++NG
Sbjct: 588 TKDTNHMIISIDAEKAFDKIQQPFMLKPLNKLGIDGTYLKIIRAIYDKPTANIILNGQKL 647
Query: 389 GEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSK-FKGVKVGADTGLEVSLLQFA 447
++ G RQG PL+P L V E + ++R K KG+++G + EV L FA
Sbjct: 648 EAPPLKTGTRQGCPLSPLLPNIVLE----VLARAIRQEKEIKGIQLGKE---EVKLSLFA 700
Query: 448 DDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFASFLNCKV 507
DD + E I + +L ++ F VSG K+N KS+ Q S L +
Sbjct: 701 DDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTI 760
Query: 508 MTIPFVYLGIPVGARASCL--KTWEPVIKKMRNRLALWKQKLISFGGRICLIQSVLSALP 565
+ YLGI + L + ++P++ +++ WK S+ GRI +++ ++ LP
Sbjct: 761 ASKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWKNIPCSWVGRINIVK--MAILP 818
Query: 566 LIFLSF----FRIPACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPKDVGGLGIKD 621
+ F ++P + F+W ++ A + + Q GG+ + D
Sbjct: 819 KVIYRFNAIPIKLPMTFFTELEKTTLKFIW-----NQKRAHIAKSTLSQKNKAGGITLPD 873
Query: 622 LDLFNRSLLGKWLWRW 637
L+ ++ + K W W
Sbjct: 874 FKLYYKATVTKTAWYW 889
>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1300
Score = 139 bits (350), Expect = 2e-32
Identities = 124/510 (24%), Positives = 222/510 (43%), Gaps = 33/510 (6%)
Query: 149 DPSRVKAAVESFFEAKFKSDV*DRPR----LEGVPFKTLSDSDNSVLIGPMDEVEIKDAV 204
DP ++ + SF++ + + + + L+ L+ L P+ EI+ +
Sbjct: 429 DPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVI 488
Query: 205 WACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNS 264
+ KSPGPDGF+ F + F + L + K + G + I LIPK
Sbjct: 489 NSLPTKKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQK 548
Query: 265 -PQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEV 323
P + FRPISL+ K+++K+LA R+ + +I Q F+ ++ V
Sbjct: 549 DPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINV 608
Query: 324 IHEVKRKKQPS-IIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVL 382
IH + + K + +I +D EKA+D + F+ ++ R +++ I ++
Sbjct: 609 IHYINKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIK 668
Query: 383 VNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSK-FKGVKVGADTGLEV 441
VNG ++ G RQG PL+P+LF V E + ++R K KG+++G + EV
Sbjct: 669 VNGEKLEAIPLKSGTRQGCPLSPYLFNIVLE----VLARAIRQQKEIKGIQIGKE---EV 721
Query: 442 SLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGVAHQFAS 501
+ ADD + + L ++ F V G K+N +KS +
Sbjct: 722 KISLLADDMIVYISDPKNSTRELLNLINSFGEVVGYKINSNKSMAFLYTKNKQAEKEIRE 781
Query: 502 FLNCKVMTIPFVYLGIPVGARASCL--KTWEPVIKKMRNRLALWKQKLISFGGRICLIQS 559
++T YLG+ + L K ++ + K+++ L WK S+ GRI +++
Sbjct: 782 TTPFSIVTNNIKYLGVTLTKEVKDLYDKNFKSLKKEIKEDLRRWKDLPCSWIGRINIVK- 840
Query: 560 VLSALPLIFLSFFRIPACVVKVCNRIMRD-------FLWGASDGGKRIAWVKWLDVCQPK 612
++ LP F IP +K+ + + F+W ++ RIA D +
Sbjct: 841 -MAILPKAIYRFNAIP---IKIPTQFFNELEGAICKFVW--NNKKPRIAKSLLKD---KR 891
Query: 613 DVGGLGIKDLDLFNRSLLGKWLWRWRTKKQ 642
GG+ + DL L+ R+++ K W W +Q
Sbjct: 892 TSGGITMPDLKLYYRAIVIKTAWYWYRDRQ 921
>POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type II
retrotransposable element R2DM [Contains: Protease (EC
3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
Endonuclease]
Length = 1057
Score = 82.8 bits (203), Expect = 3e-15
Identities = 69/275 (25%), Positives = 124/275 (45%), Gaps = 17/275 (6%)
Query: 210 NKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLN 269
+ SPGPDG + ++ V G +++ + G + V IPK + +
Sbjct: 357 SSSPGPDGITPKSARE---VPSGIMLRIMNLILWCGNLPHSIRLARTVFIPKTVTAKRPQ 413
Query: 270 EFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIHEVKR 329
+FRPIS+ + + ++ +LATRL++ + D RQ F+ D+ +++ V+ +
Sbjct: 414 DFRPISVPSVLVRQLNAILATRLNSSINW--DPRQRGFLPTDGCADNATIVDLVLRHSHK 471
Query: 330 KKQPSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSPTG 389
+ I +D KA+D++ + + + ++ ++ S+ +G +
Sbjct: 472 HFRSCYIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSE 531
Query: 390 EFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEV-SLLQFAD 448
EF RG++QGDPL+P LF V + RL + ++GA G + + FAD
Sbjct: 532 EFVPARGVKQGDPLSPILFNLVMD----------RLLRTLPSEIGAKVGNAITNAAAFAD 581
Query: 449 DTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHK 483
D V E + V L L +V GLK+N K
Sbjct: 582 DLVLFAETRMGLQVLLDKTLDFLSIV-GLKLNADK 615
>PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 711
Score = 81.6 bits (200), Expect = 6e-15
Identities = 63/239 (26%), Positives = 121/239 (50%), Gaps = 11/239 (4%)
Query: 258 LIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSV 317
LIPK + + +RPI++ + +++ ++LA RL V ++ +A + L +
Sbjct: 63 LIPKDGDLENPSNWRPITIASALQRLLHRILAKRLEAAVELHPAQKGYARIDGT--LVNS 120
Query: 318 VVLNEVIHEVKRKKQPSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLRSA 377
++L+ I + +++ + +D KA+DTV S + + R+ ++I G L +
Sbjct: 121 LLLDTYISSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYITGSLSDS 180
Query: 378 SVSVLVN-GSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGAD 436
+ ++ V GS T + + RG++QGDPL+PFLF V + L Q++ + G +G +
Sbjct: 181 TTTIRVGPGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLCSLQSTPGI----GGTIGEE 236
Query: 437 TGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKLAAIAIETGV 495
++ +L FADD + L + + +L + F L G+ +N KS ++A GV
Sbjct: 237 ---KIPVLAFADDLLLLEDNDVLLPTTLATVANFFRL-RGMSLNAKKSVSISVAASGGV 291
>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 1025
Score = 75.5 bits (184), Expect = 4e-13
Identities = 72/262 (27%), Positives = 119/262 (44%), Gaps = 17/262 (6%)
Query: 194 PMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNA 253
P+ EIK+ V AC + GPDG W+ + + G R
Sbjct: 318 PISNDEIKE-VEACK-RTAAGPDGMT----TTAWNSIDECIKSLFNMIMYHGQCPRRYLD 371
Query: 254 SFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNM 313
S VLIPK FRP+S+ + ++LA R+ ++D RQ AF+ +
Sbjct: 372 SRTVLIPKEPGTMDPACFRPLSIASVALRHFHRILANRIGE--HGLLDTRQRAFIVADGV 429
Query: 314 LDSVVVLNEVIHEVKRKKQPSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGC 373
++ +L+ +I E + K + I +D +KA+D+V+ + + R + ++IM
Sbjct: 430 AENTSLLSAMIKEARMKIKGLYIAILDVKKAFDSVEHRSILDALRRKKLPLEMRNYIMWV 489
Query: 374 LRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKV 433
R++ + V + + RG+RQGDPL+P LF V + + RL + G +
Sbjct: 490 YRNSKTRLEVVKTKGRWIRPARGVRQGDPLSPLLFNCVMDAV------LRRLPENTGFLM 543
Query: 434 GADTGLEVSLLQFADDTVFLGE 455
GA+ ++ L FADD V L E
Sbjct: 544 GAE---KIGALVFADDLVLLAE 562
>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
(ORF154)
Length = 154
Score = 61.6 bits (148), Expect = 6e-09
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 563 ALPLIFLSFFRIPACVVKVCNRIMRDFLWGASDGGKRIAWVKWLDVCQPK-DVGGLGIKD 621
ALP+ +S FR+ + K M +F W + + ++I+WV W +C+ K D GGLG +D
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61
Query: 622 LDLFNRSLLGKWLWRWRTKKQALWCQVIRA 651
L FN++LL K +R + L +++R+
Sbjct: 62 LGWFNQALLAKQSFRIIHQPHTLLSRLLRS 91
>YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III
Length = 1222
Score = 58.2 bits (139), Expect = 7e-08
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 1/174 (0%)
Query: 256 IVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLD 315
I+ IPK +P + +RPISL +++ +++ +R+ + ++ Q F+ R+
Sbjct: 670 IIPIPKKGNPSSPSNYRPISLTDPFARIMERIICSRIRSEYSHLLSPHQHGFLNFRSCPS 729
Query: 316 SVVVLNEVIHEVKRKKQPSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGCLR 375
S+V + H + + ++ I D+ KA+D V L + SW L
Sbjct: 730 SLVRSISLYHSILKNEKSLDILFFDFAKAFDKVSHPILLKKLALFGLDKLTCSWFKEFLH 789
Query: 376 SASVSVLVNG-SPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKF 428
+ SV +N + + + G+ QG P LF+ L + ++ +S F
Sbjct: 790 LRTFSVKINKFVSSNAYPISSGVPQGSVSGPLLFILFINDLLIDLEPNIHVSCF 843
>MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250
(ORF102)
Length = 122
Score = 58.2 bits (139), Expect = 7e-08
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 382 LVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEV 441
++NG+P G RGLRQGDPL+P+LF+ E L+GL + + + G++V ++ +
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRV-SNNSPRI 71
Query: 442 SLLQFADDT 450
+ L FADDT
Sbjct: 72 NHLLFADDT 80
>PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 869
Score = 54.7 bits (130), Expect = 8e-07
Identities = 74/297 (24%), Positives = 115/297 (37%), Gaps = 20/297 (6%)
Query: 194 PMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVRE-FWRRGAWSRGCN 252
P+ +EIK A K GPDG R W+ L + + F G
Sbjct: 158 PVSLIEIKSA--RASNEKGAGPDGVTPRS----WNALDDRYKRLLYNIFVFYGRVPSPIK 211
Query: 253 ASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRN 312
S V PK+ FRP+S+ I + +K+LA R V DERQ A++
Sbjct: 212 GSRTVFTPKIEGGPDPGVFRPLSICSVILREFNKILARRF--VSCYTYDERQTAYLPIDG 269
Query: 313 MLDSVVVLNEVIHEVKRKKQPSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMG 372
+ +V +L +I E KR ++ I +D KA+++V S L + + +I
Sbjct: 270 VCINVSMLTAIIAEAKRLRKELHIAILDLVKAFNSVYHSALIDAITEAGCPPGVVDYIAD 329
Query: 373 CLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVK 432
+ + G + G+ QGDPL+ LF E N R V+
Sbjct: 330 MYNNVITEMQFEGK-CELASILAGVYQGDPLSGPLFTLAYEKALRALNNEGRFD-IADVR 387
Query: 433 VGADTGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKLAAI 489
V A ++DD + L I +L + GL++N KSK ++
Sbjct: 388 VNASA--------YSDDGLLLAMTVIGLQHNLDKFGETLAKI-GLRINSRKSKTVSL 435
>PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type I
retrotransposable element R1 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 1004
Score = 54.3 bits (129), Expect = 1e-06
Identities = 85/388 (21%), Positives = 151/388 (38%), Gaps = 52/388 (13%)
Query: 101 HESLLCQKARSRW----LAEGDQNS-GFFHSTINWKRRTNSIVGLWVEGVWEED-PSRVK 154
++ +LC+ W +E ++N G +R+ + + V+GV+ + V
Sbjct: 315 YKRMLCEAKLRCWQEFVASESNENPWGRVFKLCRGRRKPVDVCSVKVDGVYTDTWEGSVN 374
Query: 155 AAVESFFEAKFKSDV*DRPRLEGVPFKTLSDSDNSVLIGPMDEVEIKDAVWACGGNKSPG 214
A + FF A D + RL+ + D + MDEV D+V C KSPG
Sbjct: 375 AMMNVFFPASI-DDASEIDRLKAIARPLPPDLE-------MDEVS--DSVRRCKVRKSPG 424
Query: 215 PDGFNFRFIKQFWDVLKGDVI----KAVREFWRRGAWSRGCNASFIVLIPKVNSPQPLNE 270
PDG ++ W + + + + E + W + L+ ++ S
Sbjct: 425 PDGIVGEMVRAVWGAIPEYMFCLYKQCLLESYFPQKWKIASLVILLKLLDRIRSDP--GS 482
Query: 271 FRPISLIGCIYKVISKLLATRLSTVVGKV-IDERQFAFVGNRNMLDSVVVLNEVIHEVKR 329
+RPI L+ + KV+ ++ RL + V + QFAF ++ D+ + H
Sbjct: 483 YRPICLLDNLGKVLEGIMVKRLDQKLMDVEVSPYQFAFTYGKSTEDAWRCVQR--HVECS 540
Query: 330 KKQPSIIFKVDYEKAYDTVDW--SFLEYMMGRMNFCSKWISWIMGCLRSASVSVLVNGSP 387
+ + I +D++ A+D + W L+ + N W+S+ G V +
Sbjct: 541 EMKYVIGLNIDFQGAFDNLGWLSMLLKLDEAQSNEFGLWMSYFGG-----RKVYYVGKTG 595
Query: 388 TGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKVGADTGLEVSLLQFA 447
+ RG QG P ++ V +N L V F ++ FA
Sbjct: 596 IVRKDVTRGCPQGSKSGPAMWKLV---MNELLLALVAAGFF--------------IVAFA 638
Query: 448 DD-TVFLGEATIQNLVSL--KCILRCFE 472
DD T+ +G + L L +C+ C E
Sbjct: 639 DDGTIVIGANSRSALEELGTRCLQLCHE 666
>RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile element
jockey (EC 2.7.7.49) (Reverse transcriptase)
Length = 916
Score = 53.5 bits (127), Expect = 2e-06
Identities = 69/271 (25%), Positives = 118/271 (43%), Gaps = 24/271 (8%)
Query: 194 PMDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRG-CN 252
P+ E+K+ V K+PG D + R I+ D ++ R G + +
Sbjct: 437 PVTLEEVKELVSKLKPKKAPGEDLLDNRTIRLLPDQALLYLVLIFNSILRVGYFPKARPT 496
Query: 253 ASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISKLLATRL--STVVGKVIDERQFAF--- 307
AS I+++ P ++ +RP SL+ + K++ +L+ R+ S V + I + QF F
Sbjct: 497 ASIIMILKPGKQPLDVDSYRPTSLLPSLGKMLERLILNRILTSEEVTRAIPKFQFGFRLQ 556
Query: 308 VGNRNMLDSVVVLNEVIHEVKRKKQPSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWI 367
G L VV N + +++K+ F +D ++A+D V L Y + +
Sbjct: 557 HGTPEQLHRVV--NFALEALEKKEYAGSCF-LDIQQAFDRVWHPGLLY-KAKSLLSPQLF 612
Query: 368 SWIMGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLF-LFVAEGLNGLFQNSVRLS 426
I SV +G + +E G+ QG L P L+ +F A+ N QN+V
Sbjct: 613 QLIKSFWEGRKFSVTADGCRSSVKFIEAGVPQGSVLGPTLYSIFTADMPN---QNAV--- 666
Query: 427 KFKGVKVGADTGLEVSLLQFADDTVFLGEAT 457
G+ G EV + +ADD L ++T
Sbjct: 667 --TGLAEG-----EVLIATYADDIAVLTKST 690
>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 606
Score = 53.5 bits (127), Expect = 2e-06
Identities = 45/183 (24%), Positives = 79/183 (42%), Gaps = 12/183 (6%)
Query: 314 LDSVVVLNEVIHEVKRKKQPSIIFKVDYEKAYDTVDWSFLEYMMGRMNFCSKWISWIMGC 373
L ++++L I + K + + +D KA+DTV + M +IM
Sbjct: 3 LANIIMLEHYIKLRRLKGKTYNVVSLDIRKAFDTVSHPAILRAMRAFGIDDGMQDFIMST 62
Query: 374 LRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKFKGVKV 433
+ A +++V G T + + G++QGDPL+P LF V + L +++ +
Sbjct: 63 ITDAYTNIVVGGRTTNKIYIRNGVKQGDPLSPVLFNIVLDEL---------VTRLNDEQP 113
Query: 434 GAD--TGLEVSLLQFADDTVFLGEATIQNLVSLKCILRCFELVSGLKVNFHKSKLAAIAI 491
GA +++ L FADD + L + I SL F G+ +N K + A
Sbjct: 114 GASMTPACKIASLAFADDLLLLEDRDIDVPNSLATTCAYFR-TRGMTLNPEKCASISAAT 172
Query: 492 ETG 494
+G
Sbjct: 173 VSG 175
>Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I
retrotransposable element R1DM (ORF 2)
Length = 1021
Score = 40.0 bits (92), Expect = 0.019
Identities = 53/238 (22%), Positives = 94/238 (39%), Gaps = 12/238 (5%)
Query: 195 MDEVEIKDAVWACGGNKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRGAWSRGCNAS 254
++ E+ V +SPG DG N K W + + R G +
Sbjct: 434 LEVFEVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCP 493
Query: 255 FIVLI---PKVNSPQPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNR 311
+V + P + +P + +R I L+ KV+ ++ R+ V+ + QF F R
Sbjct: 494 RVVSLLKGPDKDKCEP-SSYRGICLLPVFGKVLEAIMVNRVREVLPEGC-RWQFGFRQGR 551
Query: 312 NMLDSVVVLNEVIHEVKRKKQPSIIFK-VDYEKAYDTVDWSFLEYMMGRMNFCSKWISWI 370
+ D+ V V ++ VD++ A+D V+WS + + C + W
Sbjct: 552 CVEDA---WRHVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLG-CREMGLW- 606
Query: 371 MGCLRSASVSVLVNGSPTGEFKMERGLRQGDPLAPFLFLFVAEGLNGLFQNSVRLSKF 428
S +V+ + S T E + RG QG PF++ + + L Q +LS +
Sbjct: 607 -QSFFSGRRAVIRSSSGTVEVPVTRGCPQGSISGPFIWDILMDVLLQRLQPYCQLSAY 663
>WD17_HUMAN (Q8IZU2) WD-repeat protein 17
Length = 1322
Score = 36.6 bits (83), Expect = 0.21
Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 23/171 (13%)
Query: 138 VGLWVEGVWEEDPSRVKAAVESFFEAKFKSDV*DRPRLEGVPFK-TLSDSD----NSVLI 192
VGL+ G + D R VE+ F+ KFK D D L F T+ D +V
Sbjct: 374 VGLYDMGAKKWDFLRDLGHVETIFDCKFKPD--DPNLLATASFDGTIKVWDINTLTAVYT 431
Query: 193 GPMDEVEIKDAVWACGG-NKSPGPDGFNFRFIKQFWDVLKGDVIKAVREFWRRG----AW 247
P +E I WA GG N G N FI W+V KG +I+ E G AW
Sbjct: 432 SPGNEGVIYSLSWAPGGLNCIAGGTSRNGAFI---WNVQKGKIIQRFNEHGTNGIFCIAW 488
Query: 248 SR-------GCNASFIVLIPKVNSPQPLNEFRPISLIGCIYKVISK-LLAT 290
S C++ +I ++ P ++ GC + +K ++AT
Sbjct: 489 SHKDSKRIATCSSDGFCIIRTIDGKVLHKYKHPAAVFGCDWSQNNKDMIAT 539
>NCAP_VSVJO (P04881) Nucleocapsid protein (Nucleoprotein)
Length = 422
Score = 35.4 bits (80), Expect = 0.47
Identities = 43/135 (31%), Positives = 64/135 (46%), Gaps = 20/135 (14%)
Query: 38 LKGLRGRL-KDWNKAVFGDLTTRREEVVQKINILDVKEEETGLSQEEVATRESLLFDFWT 96
LKG+ G L +DW FG +REE V+ +++ V+E +T L + S D W
Sbjct: 77 LKGVEGTLDRDW--VSFGRTIGKREENVKIFDLVKVEELKTALPDGKSDPDRSAEDDKW- 133
Query: 97 VLRHHESLLCQKARS------RWLAEGDQNSGFFHSTINWKRRTNSIV--GLWVEGVWEE 148
L + L + RS + L +G +N ST R S+V GL +WE
Sbjct: 134 -LPIYILGLYRVGRSKVTDYRKKLLDGLENQCRVAST-----RFESLVEDGLDFFDIWEN 187
Query: 149 DP--SRVKAAVESFF 161
DP +++ AAV+ FF
Sbjct: 188 DPNFTKIVAAVDMFF 202
>RTP2_TRYBG (P15594) Retrotransposable element SLACS 132 kDa protein
(ORF2)
Length = 1182
Score = 34.3 bits (77), Expect = 1.1
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 15/147 (10%)
Query: 266 QPLNEFRPISLIGCIYKVISKLLATRLSTVVGKVIDERQFAFVGNRNMLDSVVVLNEVIH 325
+P ++RPI K+ S + +R+ K QF G+ + E I
Sbjct: 581 KPNGKYRPIGAESVWAKLASHIAISRVMKTAEKKFSGIQFGVGGH---------IEEAIA 631
Query: 326 EVKRK-KQPSIIFKVDYEKAYDTVDW-SFLEYMMGRMNFCSKW--ISWIMGCLRSASVSV 381
++++ + +D AY+ + + LE + G + W +S ++G + V
Sbjct: 632 KIRKDFATKGSLAMLDGRNAYNAISRRAILEAVYGDSTWSPLWRLVSLLLGT--TGEVGF 689
Query: 382 LVNGSPTGEFKMERGLRQGDPLAPFLF 408
NG ++ RG+RQG L P LF
Sbjct: 690 YENGKLCHTWESTRGVRQGMVLGPLLF 716
>EXC7_HUMAN (Q9UPT5) Exocyst complex component 7 (Exocyst complex
component Exo70)
Length = 735
Score = 34.3 bits (77), Expect = 1.1
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 37 KLKGLRGRLKDWNKAVFGDLTTRREEVVQKINILDVKEEETGLSQEEVATRESLLFDFWT 96
K+K L R K+ ++ F L TR +VV + ILD+ + L +E T E L
Sbjct: 138 KVKLLFERGKEALESEFRSLMTRHSKVVSPVLILDLISGDDDLEAQEDVTLEHL------ 191
Query: 97 VLRHHESLLCQKAR-SRWLAEGDQNSGFFH 125
ES+L R SRWL E +N F +
Sbjct: 192 ----PESVLQDVIRISRWLVEYGRNQDFMN 217
>NTRC_KLEPN (P03029) Nitrogen assimilation regulatory protein
Length = 469
Score = 33.9 bits (76), Expect = 1.4
Identities = 30/89 (33%), Positives = 45/89 (49%), Gaps = 4/89 (4%)
Query: 370 IMGCLRSASVSVLVNG-SPTGEFKMERGLRQGDP--LAPFLFLFVAEGLNGLFQNSVRLS 426
I+G L +S+SVL+NG S TG+ + L + P APF+ L +A L ++ +
Sbjct: 153 IIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESEL-FG 211
Query: 427 KFKGVKVGADTGLEVSLLQFADDTVFLGE 455
KG GA+T + Q T+FL E
Sbjct: 212 HEKGAFTGANTVRQGRFEQADGGTLFLDE 240
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,126,730
Number of Sequences: 164201
Number of extensions: 3262464
Number of successful extensions: 8949
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 8900
Number of HSP's gapped (non-prelim): 50
length of query: 651
length of database: 59,974,054
effective HSP length: 117
effective length of query: 534
effective length of database: 40,762,537
effective search space: 21767194758
effective search space used: 21767194758
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)
Lotus: description of TM0060.14