BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0058b.2
(1371 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 589 e-167
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 336 2e-91
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 187 1e-46
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 160 2e-38
YMU0_YEAST (Q04670) Transposon Ty1 protein B 124 1e-27
YME4_YEAST (Q04711) Transposon Ty1 protein B 121 1e-26
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 121 1e-26
YJZ9_YEAST (P47100) Transposon Ty1 protein B 119 6e-26
YMT5_YEAST (Q04214) Transposon Ty1 protein B 119 7e-26
YMD9_YEAST (Q03434) Transposon Ty1 protein B 117 2e-25
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 117 3e-25
YJZ7_YEAST (P47098) Transposon Ty1 protein B 115 8e-25
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 110 2e-23
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 76 6e-13
YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein 57 5e-07
POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse transcript... 52 1e-05
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 1e-05
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 1e-05
POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 1e-05
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 51 2e-05
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 589 bits (1518), Expect = e-167
Identities = 414/1339 (30%), Positives = 657/1339 (48%), Gaps = 100/1339 (7%)
Query: 55 MDDKRILALLVNSVDKRTQSVITHCQTVKELWEFLQFIFGKADNLNRIYALLQ*IFRPKQ 114
+D++ A+ ++ D ++I T + +W L+ ++ N++Y Q
Sbjct: 55 LDERAASAIRLHLSDDVVNNIIDE-DTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMS 113
Query: 115 DKRKLMDYFLEFKKYAEELTSLLSCKTKEDMLAQQKKLIALSWLSGLDQEFEVVRSQILS 174
+ + + F +L +L +ED A+ L+ L ++ + + IL
Sbjct: 114 EGTNFLSHLNVFNGLITQLANLGVKIEEEDK--------AILLLNSLPSSYDNLATTILH 165
Query: 175 SKQVDTLTDVFSRVMQSSFEKPKPAPDVDTSDRSALAAHSGFRGGRGGGRGGRGGARGRG 234
K L DV S ++ + + KP + ++ + G R GR GARG+
Sbjct: 166 GKTTIELKDVTSALLLNEKMRKKP----ENQGQALITEGRGRSYQRSSNNYGRSGARGKS 221
Query: 235 GRFGQIQ---CYSCGELGHYKN*CPNSQQHQQHFQQSAPNRFANNVSQSDVIQTQPEKRT 291
+ + CY+C + GH+K CPN ++ + +T +K
Sbjct: 222 KNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKG--------------------ETSGQK-- 259
Query: 292 VVMSDDEFARYTQFQISQQSASPSSSTATFVQTGNPTVCLSSTSRRWIIDSGATNHMTGD 351
+DD A Q + + F+ + LS W++D+ A++H T
Sbjct: 260 ---NDDNTAAMVQ---------NNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPV 307
Query: 352 SGIFLSFSSSSIHSSVTLADGSIVRVKGSG--C--TTPVSTLPMSSVLYLPQFPCNLLSI 407
+F + + +V + + S ++ G G C T TL + V ++P NL+S
Sbjct: 308 RDLFCRYVAGDF-GTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISG 366
Query: 408 SKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGLYLLDEGVSKASTAYRTSSVSPF 467
+ R S +F + ++ +I +G LY + + + +S
Sbjct: 367 IALDRDGYES--YFANQ-KWRLTKGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVD 423
Query: 468 QLHCRLGHPS---LGVLRK--LCPQLESLSNFSCESCQFAKHHRSVYLPRLNKRAMSLFH 522
H R+GH S L +L K L + + C+ C F K HR V ++R +++
Sbjct: 424 LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHR-VSFQTSSERKLNILD 482
Query: 523 IVHSDVWGPCPVTSKLGYKYFVTFVDDYSRATWLYLMKSRSELFTIFCNFCAEIRTQFNC 582
+V+SDV GP + S G KYFVTF+DD SR W+Y++K++ ++F +F F A + +
Sbjct: 483 LVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGR 542
Query: 583 PIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQ 642
+ LRSDN EY S F + HG+ H+ + TPQ NGVAER NR ++E ++++
Sbjct: 543 KLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRM 602
Query: 643 MKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYSVLFPSCSLFPLPPKVFGCTCFVLDVR 702
K+PK FW +AV TA YLINR PS L IP V + + + KVFGC F +
Sbjct: 603 AKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERV-WTNKEVSYSHLKVFGCRAFAHVPK 661
Query: 703 PQVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRYLVSADVTFFEDCSFSGWLPSSFPVC 762
Q TKLD KS+ C+F+GY + GYR + P + + S DV F E + S
Sbjct: 662 EQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKN 721
Query: 763 ESEDTFLTYITTSPAPQTTTGTGFQFYEKTYSRRPKSSAPPPDTQSLPSIPLVSSDPHDN 822
F+T +TS P + T + E+ + + + + +
Sbjct: 722 GIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQH 781
Query: 823 LDLPIALRKGKRTCSYPISSYVTSNKLSPASKSFVAALDSVSVPKSLSDALSHAGWRQ-- 880
L + R + YP + YV + P+SL + LSH Q
Sbjct: 782 QPLRRSERPRVESRRYPSTEYVL--------------ISDDREPESLKEVLSHPEKNQLM 827
Query: 881 -AMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTY 939
AM+EEM +L+ N T+ LV LP GK+ + CKWV+ K + D L R KARLV KG+ Q
Sbjct: 828 KAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKK 887
Query: 940 GVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQ 999
G+D+ + FSPV K++S+R ++SLAA+ + QLDVK AFLHGDL++E+YMEQP GF
Sbjct: 888 GIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVA 947
Query: 1000 GECGKVCRLKKSLYGLKQSPRSWFGRFSDVVMEFGLRRSESDHTVFFKQ-TNKGCILLVV 1058
G+ VC+L KSLYGLKQ+PR W+ +F + ++ SD V+FK+ + I+L++
Sbjct: 948 GKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLL 1007
Query: 1059 YVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKYFLGIEVVYSKNG--IMISQRKYVL 1116
YVDD++I G D I LK L F KDLG + LG+++V + + +SQ KY+
Sbjct: 1008 YVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIE 1067
Query: 1117 DMLAETGLMGSKPCETPMEPGMKLTAEGVPFSDPQQ-------YRRLVGKLNYLTV-TRP 1168
+L + +KP TP+ +KL+ + P + ++ Y VG L Y V TRP
Sbjct: 1068 RVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRP 1127
Query: 1169 DIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGS 1228
DIA V VVS+F+ +P HWEA+ I++YL+ G + + + ++ ++DAD AG
Sbjct: 1128 DIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGD 1186
Query: 1229 PMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQT--TCMWVGQILSEMGI 1286
+RKS+TGY G ISW+SK Q VA S+ EAEY A +T +W+ + L E+G+
Sbjct: 1187 IDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGL 1246
Query: 1287 ERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLAD 1346
+ ++CD+Q+A+ +S N ++H RTKHI+V H+IRE + + + T + AD
Sbjct: 1247 HQ-KEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPAD 1305
Query: 1347 VFTKALNGVRNDF-ICNKL 1364
+ TK + RN F +C +L
Sbjct: 1306 MLTKVV--PRNKFELCKEL 1322
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 336 bits (862), Expect = 2e-91
Identities = 200/591 (33%), Positives = 319/591 (53%), Gaps = 20/591 (3%)
Query: 790 EKTYSRRPKSSAPPPDTQSLPSIPLVSSDPHDNLDLPIALRKGKRTCSYPISSYVTSNKL 849
E S P S + L I + +P N + I R+ +R + P SY N+
Sbjct: 818 ESKGSGNPNESRESETAEHLKEIGI--DNPTKNDGIEIINRRSERLKTKPQISY---NEE 872
Query: 850 SPASKSFVAALDSV--SVPKSLSDAL---SHAGWRQAMEEEMLALEHNATWDLVPLPAGK 904
+ V ++ VP S + + W +A+ E+ A + N TW + P K
Sbjct: 873 DNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENK 932
Query: 905 QVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLAA 964
+V +WV++ K N G+ R KARLVA+G+ Q Y +DY +TF+PVA++SS R ++SL
Sbjct: 933 NIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVI 992
Query: 965 TNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWFG 1024
+ + Q+DVK AFL+G L++E+YM P G + VC+L K++YGLKQ+ R WF
Sbjct: 993 QYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSD--NVCKLNKAIYGLKQAARCWFE 1050
Query: 1025 RFSDVVMEFGLRRSESDHTVFF--KQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQM 1082
F + E S D ++ K I +++YVDD+VI D + N K +L
Sbjct: 1051 VFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLME 1110
Query: 1083 KFQTKDLGILKYFLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTA 1142
KF+ DL +K+F+GI + ++ I +SQ YV +L++ + TP+ +
Sbjct: 1111 KFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYEL 1170
Query: 1143 EGVPFSDPQQYRRLVGKLNYLTV-TRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKK 1201
R L+G L Y+ + TRPD+ V+++S++ S W+ L R+++YLK
Sbjct: 1171 LNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKG 1230
Query: 1202 APGRGIVYRDH--GHMRVEAFSDADWAGSPMDRKSTTGYCV-FLGGNLISWKSKKQNVVA 1258
++++ + ++ + D+DWAGS +DRKSTTGY NLI W +K+QN VA
Sbjct: 1231 TIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVA 1290
Query: 1259 RSSAEAEYRAM--AQTTCMWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKH 1316
SS EAEY A+ A +W+ +L+ + I+ +P+K++ DNQ + I++NP H+R KH
Sbjct: 1291 ASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKH 1350
Query: 1317 IEVDCHFIREKLQQNLISTSYVRTGDQLADVFTKALNGVRNDFICNKLGMI 1367
I++ HF RE++Q N+I Y+ T +QLAD+FTK L R + +KLG++
Sbjct: 1351 IDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLL 1401
Score = 159 bits (403), Expect = 4e-38
Identities = 178/761 (23%), Positives = 316/761 (41%), Gaps = 95/761 (12%)
Query: 15 DGENYVEWKYLVAVSLGGMGKDEHLTGSCPTNATAAAKWKMDDKRILALLVNSVDKRTQS 74
DGE Y WK+ + L + + G P + WK ++ + ++ + +
Sbjct: 12 DGEKYAIWKFRIRALLAEQDVLKVVDGLMPNEVDDS--WKKAERCAKSTIIEYLSDSFLN 69
Query: 75 VITHCQTVKELWEFLQFIFGKADNLNRIYALLQ*IFRPKQDKRKLMDYFLEFKKYAEELT 134
T T +++ E L ++ + +++ + + + L+ +F F + EL
Sbjct: 70 FATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISEL- 128
Query: 135 SLLSCKTKEDMLAQQKKLIAL-SWLSGLDQEFEVVRSQILSSKQVDTLTDVFSRVMQSSF 193
L + E+M LI L S G+ E + + L TL V +R++
Sbjct: 129 -LAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENL------TLAFVKNRLLDQEI 181
Query: 194 EKPKPAPDVDTSDRSALAAHSG--FRGGRGGGRGGRGGARGRGGRFGQIQCYSCGELGHY 251
+ D +A+ ++ ++ R + +G +++C+ CG GH
Sbjct: 182 KIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGHI 241
Query: 252 KN*CPNSQQHQQHFQQSAPNRFANNVSQSDVIQTQPEKRTVVMSDDEFARYTQFQISQQS 311
K C H+++ N+ N Q +QT
Sbjct: 242 KKDC-------FHYKRILNNKNKENEKQ---VQT-------------------------- 265
Query: 312 ASPSSSTATFVQTGNPTVCLSSTSRRWIIDSGATNHMTGDSGIF---------LSFSSSS 362
+ S A V+ N T + + +++DSGA++H+ D ++ L + +
Sbjct: 266 -ATSHGIAFMVKEVNNTSVMDNCG--FVLDSGASDHLINDESLYTDSVEVVPPLKIAVAK 322
Query: 363 IHSSVTLADGSIVRVKGSGCTTPVSTLPMSSVLYLPQFPCNLLSISKITRSLKCSVTFFP 422
+ IVR++ + + VL+ + NL+S+ ++ + S+ F
Sbjct: 323 QGEFIYATKRGIVRLRND------HEITLEDVLFCKEAAGNLMSVKRLQEA-GMSIEFDK 375
Query: 423 DSCVFQDLSTQRIIGRGRESDGLYLLDEGVSKASTAYRTSSVSPFQL-HCRLGHPSLGVL 481
+ ++ G+ ++ + + + F+L H R GH S G L
Sbjct: 376 SGVTISKNGLMVV-----KNSGMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKL 430
Query: 482 ----RKLCPQLESLSN---FSCESCQFAKHHRSVYLPRLNKRAMSLFHI------VHSDV 528
RK +SL N SCE C+ + + LP K+ HI VHSDV
Sbjct: 431 LEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPF--KQLKDKTHIKRPLFVVHSDV 488
Query: 529 WGPCPVTSKLGYKYFVTFVDDYSRATWLYLMKSRSELFTIFCNFCAEIRTQFNCPIHILR 588
GP + YFV FVD ++ YL+K +S++F++F +F A+ FN + L
Sbjct: 489 CGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLY 548
Query: 589 SDNAKEYFSAPFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKC 648
DN +EY S R F K G+ + + TPQ NGV+ER R + E A+ ++ K+ K
Sbjct: 549 IDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKS 608
Query: 649 FWADAVLTAAYLINRMPSTVL--NGVIPYSVLFPSCSLFPLPPKVFGCTCFVLDVRPQVT 706
FW +AVLTA YLINR+PS L + PY ++ + + +VFG T +V ++ +
Sbjct: 609 FWGEAVLTATYLINRIPSRALVDSSKTPYE-MWHNKKPYLKHLRVFGATVYV-HIKNKQG 666
Query: 707 KLDPKSLKCVFLGYSRTQKGYRCFSPALGRYLVSADVTFFE 747
K D KS K +F+GY G++ + +++V+ DV E
Sbjct: 667 KFDDKSFKSIFVGYE--PNGFKLWDAVNEKFIVARDVVVDE 705
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 187 bits (476), Expect = 1e-46
Identities = 92/217 (42%), Positives = 136/217 (62%)
Query: 1056 LVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGILKYFLGIEVVYSKNGIMISQRKYV 1115
L++YVDDI++TGS + + L L F KDLG + YFLGI++ +G+ +SQ KY
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 1116 LDMLAETGLMGSKPCETPMEPGMKLTAEGVPFSDPQQYRRLVGKLNYLTVTRPDIAFPVS 1175
+L G++ KP TP+ + + + DP +R +VG L YLT+TRPDI++ V+
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 122
Query: 1176 VVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHMRVEAFSDADWAGSPMDRKST 1235
+V Q M PT A ++ L R+++Y+K G+ + + V+AF D+DWAG R+ST
Sbjct: 123 IVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRST 182
Query: 1236 TGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQT 1272
TG+C FLG N+ISW +K+Q V+RSS E EYRA+A T
Sbjct: 183 TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALT 219
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 160 bits (405), Expect = 2e-38
Identities = 97/304 (31%), Positives = 158/304 (51%), Gaps = 4/304 (1%)
Query: 973 LDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWFGRFSDVVME 1032
+DV AFL+ + + +Y++QPPGFV + V L +YGLKQ+P W ++ + +
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 1033 FGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGIL 1092
G R E +H ++F+ T+ G I + VYVDD+++ + +K L + KDLG +
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1093 KYFLGIEVVYSKNG-IMISQRKYVLDMLAETGLMGSKPCETPMEPGMKLTAEGVP-FSDP 1150
FLG+ + S NG I +S + Y+ +E+ + K +TP+ L P D
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180
Query: 1151 QQYRRLVGKLNYLTVT-RPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVY 1209
Y+ +VG+L + T RPDI++PVS++S+F+ P H E+ R+++YL + Y
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240
Query: 1210 RDHGHMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKK-QNVVARSSAEAEYRA 1268
R + + + DA ST GY L G ++W SKK + V+ S EAEY
Sbjct: 241 RSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYIT 300
Query: 1269 MAQT 1272
++T
Sbjct: 301 ASET 304
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 124 bits (312), Expect = 1e-27
Identities = 125/516 (24%), Positives = 233/516 (44%), Gaps = 69/516 (13%)
Query: 880 QAMEEEMLALEHNATWDLVPLPAGKQ-----VVGCKWVYTTKVNPDGSLARLKARLVAKG 934
QA +E+ L TWD K+ V+ +++ K DG+ KAR VA+G
Sbjct: 825 QAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRK--RDGTH---KARFVARG 879
Query: 935 YAQTYGVDYTDTFSPVAKLSSVR-----ILISLAATNHWPLFQLDVKNAFLHGDLQDEVY 989
+ + DT+ P + ++V +SLA N++ + QLD+ +A+L+ D+++E+Y
Sbjct: 880 -----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELY 934
Query: 990 MEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWFGRF-SDVVMEFGLRRSESDHTVFFKQ 1048
+ PP G K+ RLKKSLYGLKQS +W+ S ++ + G+ VF
Sbjct: 935 IRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVF--- 988
Query: 1049 TNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGI------LKY-FLGIEVV 1101
+ + ++VDD+++ D + T L+ ++ TK + + ++Y LG+E+
Sbjct: 989 -KNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIK 1047
Query: 1102 YSKNGIMISQRKYVLDMLAETGLMGSKP-CETPMEP-GMKLTAEGVP--FSDPQ------ 1151
Y QR + + E L P P+ P G KL+A G P + D Q
Sbjct: 1048 Y--------QRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEE 1099
Query: 1152 --------QYRRLVGKLNYLTVT-RPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKA 1202
+ ++L+G +Y+ R D+ + ++ ++Q + P+ + +++++
Sbjct: 1100 DDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNT 1159
Query: 1203 PGRGIVYRDHGHM----RVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVA 1258
+ +++ + ++ SDA + P KS G L G +I KS K ++
Sbjct: 1160 RDKQLIWHKSKPVKPTNKLVVISDASYGNQPY-YKSQIGNIYLLNGKVIGGKSTKASLTC 1218
Query: 1259 RSSAEAEYRAMAQTTCMW--VGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKH 1316
S+ EAE A++++ + + ++ E+ + I+ L I SN R +
Sbjct: 1219 TSTTEAEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISIIISNNEEKFRNRF 1278
Query: 1317 IEVDCHFIREKLQQNLISTSYVRTGDQLADVFTKAL 1352
+R+++ N + Y+ T +ADV TK L
Sbjct: 1279 FGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPL 1314
Score = 87.0 bits (214), Expect = 3e-16
Identities = 62/250 (24%), Positives = 109/250 (42%), Gaps = 8/250 (3%)
Query: 490 SLSNFSCESCQFAKH--HRSVYLPRLN-KRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTF 546
S ++ C C K HR + RL + + F +H+D++GP K YF++F
Sbjct: 204 SAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISF 263
Query: 547 VDDYSRATWLYLMKSRSE--LFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFM 604
D+ ++ W+Y + R E + +F A I+ QF + +++ D EY + F+
Sbjct: 264 TDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFL 323
Query: 605 DKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRM 664
+K+G+ + + +GVAER NR L++ + + +P W A+ + + N +
Sbjct: 324 EKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSL 383
Query: 665 PSTVLNGVIPYSVLFPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQ 724
S + L P FG V D P +K+ P+ + L SR
Sbjct: 384 ASPKSKKSARQHAGLAGLDISTLLP--FGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNS 440
Query: 725 KGYRCFSPAL 734
GY + P+L
Sbjct: 441 YGYIIYLPSL 450
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 121 bits (303), Expect = 1e-26
Identities = 118/487 (24%), Positives = 223/487 (45%), Gaps = 64/487 (13%)
Query: 904 KQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVR-----I 958
K+V+ +++ K DG+ KAR VA+G + + DT+ + ++V
Sbjct: 854 KRVINSMFIFNRK--RDGTH---KARFVARG-----DIQHPDTYDSGMQSNTVHHYALMT 903
Query: 959 LISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQS 1018
+SLA N++ + QLD+ +A+L+ D+++E+Y+ PP G K+ RLKKSLYGLKQS
Sbjct: 904 SLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQS 960
Query: 1019 PRSWFGRF-SDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLK 1077
+W+ S ++ + G+ VF + + ++VDD+++ D +
Sbjct: 961 GANWYETIKSYLIKQCGMEEVRGWSCVF----KNSQVTICLFVDDMILFSKDLNANKKII 1016
Query: 1078 TFLQMKFQTKDLGI------LKY-FLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKP- 1129
T L+ ++ TK + + ++Y LG+E+ Y QR + + E L P
Sbjct: 1017 TTLKKQYDTKIINLGESDNEIQYDILGLEIKY--------QRGKYMKLGMENSLTEKIPK 1068
Query: 1130 CETPMEP-GMKLTAEGVP---------FSDPQQYR-------RLVGKLNYLTVT-RPDIA 1171
P+ P G KL+A G P D +Y+ +L+G +Y+ R D+
Sbjct: 1069 LNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLL 1128
Query: 1172 FPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDH----GHMRVEAFSDADWAG 1227
+ ++ ++Q + P+ + +++++ + +++ + ++ A SDA +
Sbjct: 1129 YYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGN 1188
Query: 1228 SPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQTTCMW--VGQILSEMG 1285
P KS G L G +I KS K ++ S+ EAE A++++ + + ++ E+
Sbjct: 1189 QPY-YKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELN 1247
Query: 1286 IERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLA 1345
+ I+ L I SN R + +R+++ N + Y+ T +A
Sbjct: 1248 KKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIA 1307
Query: 1346 DVFTKAL 1352
DV TK L
Sbjct: 1308 DVMTKPL 1314
Score = 87.0 bits (214), Expect = 3e-16
Identities = 62/250 (24%), Positives = 109/250 (42%), Gaps = 8/250 (3%)
Query: 490 SLSNFSCESCQFAKH--HRSVYLPRLN-KRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTF 546
S ++ C C K HR + RL + + F +H+D++GP K YF++F
Sbjct: 204 SAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISF 263
Query: 547 VDDYSRATWLYLMKSRSE--LFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFM 604
D+ ++ W+Y + R E + +F A I+ QF + +++ D EY + F+
Sbjct: 264 TDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFL 323
Query: 605 DKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRM 664
+K+G+ + + +GVAER NR L++ + + +P W A+ + + N +
Sbjct: 324 EKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSL 383
Query: 665 PSTVLNGVIPYSVLFPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQ 724
S + L P FG V D P +K+ P+ + L SR
Sbjct: 384 ASPKSKKSARQHAGLAGLDISTLLP--FGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNS 440
Query: 725 KGYRCFSPAL 734
GY + P+L
Sbjct: 441 YGYIIYLPSL 450
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 121 bits (303), Expect = 1e-26
Identities = 126/504 (25%), Positives = 232/504 (46%), Gaps = 43/504 (8%)
Query: 878 WRQAMEEEMLALEHNATWDLVPLPAGKQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQ 937
++QA +E+ L+ +D+ + ++ V T + KAR+V +G Q
Sbjct: 1289 YKQAYHKELQNLKDMKVFDVDVKYSRSEIPDNLIVPTNTIFTKKRNGIYKARIVCRGDTQ 1348
Query: 938 ---TYGVDYTDTFSPVAKLSSVRILISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPP 994
TY V T++ + + ++I + +A + + LD+ +AFL+ L++E+Y+ P
Sbjct: 1349 SPDTYSVITTESLNH----NHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHPH 1404
Query: 995 GFVAQGECGKVCRLKKSLYGLKQSPRSWFGRFSDVVMEFGLRRSESDHTVFFKQTNKGCI 1054
C V +L K+LYGLKQSP+ W + GL+ ++ +T QT +
Sbjct: 1405 ----DRRC--VVKLNKALYGLKQSPKEWNDHLRQYLNGIGLK--DNSYTPGLYQTEDKNL 1456
Query: 1055 LLVVYVDDIVITGSDSEGIGNLKTFLQMKFQTKDLGIL------KYFLGIEVVYSK--NG 1106
++ VYVDD VI S+ + + L+ F+ K G L LG+++VY+K
Sbjct: 1457 MIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGT 1516
Query: 1107 IMISQRKYV--LDMLAETGLMGSKPCETPMEPGMKL-TAEGVPFSDPQQYR-------RL 1156
I ++ + ++ +D L + P K+ + V +++R +L
Sbjct: 1517 IDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEFRQGVLKLQQL 1576
Query: 1157 VGKLNYLT-VTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVY-RD-HG 1213
+G+LNY+ R DI F V V++ ++ P + + + +I++YL + GI Y RD +
Sbjct: 1577 LGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDIGIHYDRDCNK 1636
Query: 1214 HMRVEAFSDADWAGSPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAE----YRAM 1269
+V A +DA GS D +S G ++ G N+ + S K SS EAE Y
Sbjct: 1637 DKKVIAITDAS-VGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGY 1695
Query: 1270 AQTTCMWVGQILSEMGIERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQ 1329
A + + V L E+G + + + D++ A+ + + K + I+EK++
Sbjct: 1696 ADSETLKV--TLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIK 1753
Query: 1330 QNLISTSYVRTGDQLADVFTKALN 1353
+ I + +AD+ TK ++
Sbjct: 1754 EKSIKLLKITGKGNIADLLTKPVS 1777
Score = 49.7 bits (117), Expect = 6e-05
Identities = 87/451 (19%), Positives = 175/451 (38%), Gaps = 60/451 (13%)
Query: 339 IIDSGATNHMTGDSGIFLSFSSSSI---------HSSVTLADGSIVRVKGSGCTTPVSTL 389
IID+G+ ++T D + ++ S+ +SSV++ +++K T L
Sbjct: 413 IIDTGSGVNITNDKTLLHNYEDSNRSTRFFGIGKNSSVSVKGYGYIKIKNGHNNTDNKCL 472
Query: 390 PMSSVLYLPQFPCNLLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGLY--L 447
Y+P+ ++S + + K + S + L + I + + +G+
Sbjct: 473 ---LTYYVPEEESTIISCYDLAKKTKMVL-----SRKYTRLGNKIIKIKTKIVNGVIHVK 524
Query: 448 LDEGVSKASTAYRTSSVSP-----FQL----------HCRLGHPSLGVLRKLCPQ----- 487
++E + + S + +++ P F+L H R+GH + +
Sbjct: 525 MNELIERPSDDSKINAIKPTSSPGFKLNKRSITLEDAHKRMGHTGIQQIENSIKHNHYEE 584
Query: 488 ----LESLSNFSCESCQFAKH-HRSVYLPRLNKRAMSLFHIVHS----DVWGPCPVTSKL 538
++ + F C++C+ +K R+ Y +N + H S D++GP ++
Sbjct: 585 SLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD--HEPGSSWCMDIFGPVSSSNAD 642
Query: 539 GYKYFVTFVDDYSR--ATWLYLMKSRSELFTIFCNFCAEIRTQFNCPIHILRSDNAKEYF 596
+Y + VD+ +R T + K+ + + TQF+ + + SD E+
Sbjct: 643 TKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQYVETQFDRKVREINSDRGTEFT 702
Query: 597 SAPFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLT 656
+ + G+ H + NG AER R ++ A L+ Q + FW AV +
Sbjct: 703 NDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITDATTLLRQSNLRVKFWEYAVTS 762
Query: 657 AAYLINRMPSTVLNGVIPYSVLFPSCSLFPLPPKVFGCTCF---VLDVRPQVTKLDPKSL 713
A + N + G +P + S P+ ++ F + KL P L
Sbjct: 763 ATNIRNYLEHK-STGKLPLKAI----SRQPVTVRLMSFLPFGEKGIIWNHNHKKLKPSGL 817
Query: 714 KCVFLGYSRTQKGYRCFSPALGRYLVSADVT 744
+ L GY+ F P+ + + S + T
Sbjct: 818 PSIILCKDPNSYGYKFFIPSKNKIVTSDNYT 848
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 119 bits (298), Expect = 6e-26
Identities = 117/487 (24%), Positives = 223/487 (45%), Gaps = 64/487 (13%)
Query: 904 KQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVR-----I 958
K+V+ +++ K DG+ KAR VA+G + + DT+ + ++V
Sbjct: 1281 KRVINSMFIFNKK--RDGTH---KARFVARG-----DIQHPDTYDSGMQSNTVHHYALMT 1330
Query: 959 LISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQS 1018
+SLA N++ + QLD+ +A+L+ D+++E+Y+ PP G K+ RLKKSLYGLKQS
Sbjct: 1331 SLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQS 1387
Query: 1019 PRSWFGRF-SDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLK 1077
+W+ S ++ + G+ VF + + ++VDD+V+ + +
Sbjct: 1388 GANWYETIKSYLIQQCGMEEVRGWSCVF----KNSQVTICLFVDDMVLFSKNLNSNKRII 1443
Query: 1078 TFLQMKFQTKDLGI------LKY-FLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKP- 1129
L+M++ TK + + ++Y LG+E+ Y QR + + E L P
Sbjct: 1444 EKLKMQYDTKIINLGESDEEIQYDILGLEIKY--------QRGKYMKLGMENSLTEKIPK 1495
Query: 1130 CETPMEP-GMKLTAEGVP--FSDPQ--------------QYRRLVGKLNYLTVT-RPDIA 1171
P+ P G KL+A G P + D Q + ++L+G +Y+ R D+
Sbjct: 1496 LNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLL 1555
Query: 1172 FPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHM----RVEAFSDADWAG 1227
+ ++ ++Q + P+ + +++++ + +++ + ++ SDA +
Sbjct: 1556 YYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASYGN 1615
Query: 1228 SPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQTTCMW--VGQILSEMG 1285
P KS G L G +I KS K ++ S+ EAE A++++ + + ++ E+
Sbjct: 1616 QPY-YKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELD 1674
Query: 1286 IERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLA 1345
+ I+ L I SN R + +R+++ N + Y+ T +A
Sbjct: 1675 KKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIA 1734
Query: 1346 DVFTKAL 1352
DV TK L
Sbjct: 1735 DVMTKPL 1741
Score = 87.0 bits (214), Expect = 3e-16
Identities = 62/250 (24%), Positives = 109/250 (42%), Gaps = 8/250 (3%)
Query: 490 SLSNFSCESCQFAKH--HRSVYLPRLN-KRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTF 546
S ++ C C K HR + RL + + F +H+D++GP K YF++F
Sbjct: 631 SAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISF 690
Query: 547 VDDYSRATWLYLMKSRSE--LFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFM 604
D+ ++ W+Y + R E + +F A I+ QF + +++ D EY + F+
Sbjct: 691 TDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFL 750
Query: 605 DKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRM 664
+K+G+ + + +GVAER NR L++ + + +P W A+ + + N +
Sbjct: 751 EKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSL 810
Query: 665 PSTVLNGVIPYSVLFPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQ 724
S + L P FG V D P +K+ P+ + L SR
Sbjct: 811 ASPKSKKSARQHAGLAGLDISTLLP--FGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNS 867
Query: 725 KGYRCFSPAL 734
GY + P+L
Sbjct: 868 YGYIIYLPSL 877
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 119 bits (297), Expect = 7e-26
Identities = 117/487 (24%), Positives = 223/487 (45%), Gaps = 64/487 (13%)
Query: 904 KQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVR-----I 958
K+V+ +++ K DG+ KAR VA+G + + DT+ + ++V
Sbjct: 854 KRVINSMFIFNRK--RDGTH---KARFVARG-----DIQHPDTYDSGMQSNTVHHYALMT 903
Query: 959 LISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQS 1018
+SLA N++ + QLD+ +A+L+ D+++E+Y+ PP G K+ RLKKSLYGLKQS
Sbjct: 904 SLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQS 960
Query: 1019 PRSWFGRF-SDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLK 1077
+W+ S ++ + G+ VF + + ++VDD+V+ + +
Sbjct: 961 GANWYETIKSYLIKQCGMEEVRGWSCVF----ENSQVTICLFVDDMVLFSKNLNSNKRII 1016
Query: 1078 TFLQMKFQTKDLGI------LKY-FLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKP- 1129
L+M++ TK + + ++Y LG+E+ Y QR + + E L P
Sbjct: 1017 DKLKMQYDTKIINLGESDEEIQYDILGLEIKY--------QRGKYMKLGMENSLTEKIPK 1068
Query: 1130 CETPMEP-GMKLTAEGVP--FSDPQ--------------QYRRLVGKLNYLTVT-RPDIA 1171
P+ P G KL+A G P + D Q + ++L+G +Y+ R D+
Sbjct: 1069 LNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLL 1128
Query: 1172 FPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHM----RVEAFSDADWAG 1227
+ ++ ++Q + P+ + +++++ + +++ + ++ SDA +
Sbjct: 1129 YYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASYGN 1188
Query: 1228 SPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQTTCMW--VGQILSEMG 1285
P KS G L G +I KS K ++ S+ EAE A++++ + + ++ E+
Sbjct: 1189 QPY-YKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELD 1247
Query: 1286 IERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLA 1345
+ I+ L I SN R + +R+++ N + Y+ T +A
Sbjct: 1248 KKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIA 1307
Query: 1346 DVFTKAL 1352
DV TK L
Sbjct: 1308 DVMTKPL 1314
Score = 87.0 bits (214), Expect = 3e-16
Identities = 62/250 (24%), Positives = 109/250 (42%), Gaps = 8/250 (3%)
Query: 490 SLSNFSCESCQFAKH--HRSVYLPRLN-KRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTF 546
S ++ C C K HR + RL + + F +H+D++GP K YF++F
Sbjct: 204 SAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISF 263
Query: 547 VDDYSRATWLYLMKSRSE--LFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFM 604
D+ ++ W+Y + R E + +F A I+ QF + +++ D EY + F+
Sbjct: 264 TDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFL 323
Query: 605 DKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRM 664
+K+G+ + + +GVAER NR L++ + + +P W A+ + + N +
Sbjct: 324 EKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSL 383
Query: 665 PSTVLNGVIPYSVLFPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQ 724
S + L P FG V D P +K+ P+ + L SR
Sbjct: 384 ASPKSKKSARQHAGLAGLDISTLLP--FGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNS 440
Query: 725 KGYRCFSPAL 734
GY + P+L
Sbjct: 441 YGYIIYLPSL 450
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 117 bits (294), Expect = 2e-25
Identities = 117/487 (24%), Positives = 221/487 (45%), Gaps = 64/487 (13%)
Query: 904 KQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVR-----I 958
K+V+ +++ K DG+ KAR VA+G + + DT+ + ++V
Sbjct: 854 KRVINSMFIFNKK--RDGTH---KARFVARG-----DIQHPDTYDSGMQSNTVHHYALMT 903
Query: 959 LISLAATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQS 1018
+SLA N++ + QLD+ +A+L+ D+++E+Y+ PP G K+ RLKKSLYGLKQS
Sbjct: 904 SLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQS 960
Query: 1019 PRSWFGRF-SDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLK 1077
+W+ S ++ + G+ VF + + ++VDD+++ D +
Sbjct: 961 GANWYETIKSYLIKQCGMEEVRGWSCVF----KNSQVTICLFVDDMILFSKDLNANKKII 1016
Query: 1078 TFLQMKFQTKDLGI------LKY-FLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKP- 1129
T L+ ++ TK + + ++Y LG+E+ Y QR + + E L P
Sbjct: 1017 TTLKKQYDTKIINLGESDNEIQYDILGLEIKY--------QRGKYMKLGMENSLTEKIPK 1068
Query: 1130 CETPMEP-GMKLTAEGVP---------FSDPQQYR-------RLVGKLNYLTVT-RPDIA 1171
P+ P G KL+A G P D +Y+ +L+G +Y+ R D+
Sbjct: 1069 LNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLL 1128
Query: 1172 FPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDH----GHMRVEAFSDADWAG 1227
+ ++ ++Q + P+ + +++++ + +++ + ++ A SDA +
Sbjct: 1129 YYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGN 1188
Query: 1228 SPMDRKSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQTTCMW--VGQILSEMG 1285
P KS G L G +I KS K ++ S+ EAE A++++ + + ++ E+
Sbjct: 1189 QPY-YKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELN 1247
Query: 1286 IERISPMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLA 1345
+ I L I S R + +R+++ N + Y+ T +A
Sbjct: 1248 KKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIA 1307
Query: 1346 DVFTKAL 1352
DV TK L
Sbjct: 1308 DVMTKPL 1314
Score = 87.0 bits (214), Expect = 3e-16
Identities = 62/250 (24%), Positives = 109/250 (42%), Gaps = 8/250 (3%)
Query: 490 SLSNFSCESCQFAKH--HRSVYLPRLN-KRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTF 546
S ++ C C K HR + RL + + F +H+D++GP K YF++F
Sbjct: 204 SAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISF 263
Query: 547 VDDYSRATWLYLMKSRSE--LFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFM 604
D+ ++ W+Y + R E + +F A I+ QF + +++ D EY + F+
Sbjct: 264 TDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFL 323
Query: 605 DKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRM 664
+K+G+ + + +GVAER NR L++ + + +P W A+ + + N +
Sbjct: 324 EKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSL 383
Query: 665 PSTVLNGVIPYSVLFPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQ 724
S + L P FG V D P +K+ P+ + L SR
Sbjct: 384 ASPKSKKSARQHAGLAGLDISTLLP--FGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNS 440
Query: 725 KGYRCFSPAL 734
GY + P+L
Sbjct: 441 YGYIIYLPSL 450
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 117 bits (292), Expect = 3e-25
Identities = 105/473 (22%), Positives = 216/473 (45%), Gaps = 36/473 (7%)
Query: 904 KQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLA 963
K+V+ +++ K DG+ KAR VA+G Q +D S ++ +S+A
Sbjct: 1296 KKVINSMFIFNKK--RDGTH---KARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIA 1350
Query: 964 ATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWF 1023
N + + QLD+ +A+L+ D+++E+Y+ PP G K+ RL+KSLYGLKQS +W+
Sbjct: 1351 LDNDYYITQLDISSAYLYADIKEELYIRPPPHL---GLNDKLLRLRKSLYGLKQSGANWY 1407
Query: 1024 GRFSDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQMK 1083
++ + + FK + + + ++VDD+++ D + T L+ +
Sbjct: 1408 ETIKSYLINCCDMQEVRGWSCVFKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQ 1464
Query: 1084 FQTKDLGI------LKY-FLGIEVVYSKNGIM-ISQRKYVLDMLAETGL---MGSKPCET 1132
+ TK + + ++Y LG+E+ Y ++ M + K + + L + + K
Sbjct: 1465 YDTKIINLGESDNEIQYDILGLEIKYQRSKYMKLGMEKSLTEKLPKLNVPLNPKGKKLRA 1524
Query: 1133 PMEPGMKLTAEGVPFSDPQ------QYRRLVGKLNYLTVT-RPDIAFPVSVVSQFMSSPT 1185
P +PG + + + + + + ++L+G +Y+ R D+ + ++ ++Q + P+
Sbjct: 1525 PGQPGHYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPS 1584
Query: 1186 DAHWEALIRIVKYLKKAPGRGIVYRDHGHMRVE----AFSDADWAGSPMDRKSTTGYCVF 1241
+ +++++ + +++ + + + A SDA + P KS G
Sbjct: 1585 RQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKLVAISDASYGNQPY-YKSQIGNIFL 1643
Query: 1242 LGGNLISWKSKKQNVVARSSAEAEYRAMAQTTCMW--VGQILSEMGIERISPMKLWCDNQ 1299
L G +I KS K ++ S+ EAE A+++ + + ++ E+ + I L
Sbjct: 1644 LNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQELNKKPIIKGLLTDSRS 1703
Query: 1300 AALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLADVFTKAL 1352
I S R + +R+++ N + Y+ T +ADV TK L
Sbjct: 1704 TISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPL 1756
Score = 95.5 bits (236), Expect = 9e-19
Identities = 141/670 (21%), Positives = 260/670 (38%), Gaps = 73/670 (10%)
Query: 129 YAEELTSLLSCKTKEDMLAQQKKLIALSWLSGLDQEFEVVRSQILSSKQVDTLTDVFSRV 188
YA+ LT L CK+ M ++L W++ + E++ S DT S +
Sbjct: 241 YADILTVL--CKSVSKMQTNNQEL--KDWIALANLEYD-------GSTSADTFEITVSTI 289
Query: 189 MQSSFEKPKPAPDVDTSDRSALAAHSGFRGGRGGGRGGRGGARGRGGR-----FGQIQCY 243
+Q E +++ SDR LA +G G + R R + F +IQ
Sbjct: 290 IQRLKEN-----NINVSDR--LACQLILKGLSGDFKYLRNQYRTKTNMKLSQLFAEIQLI 342
Query: 244 SCGELGHYKN*CPNSQQHQQH--FQQSAPNRFANNVSQSDVIQTQPEKRTV-----VMSD 296
N +QH ++ +++PN V+ + +T K + +
Sbjct: 343 YDENKIMNLNKPSQYKQHSEYKNVSRTSPNTTNTKVTTRNYQRTNSSKPRAAKAHNIATS 402
Query: 297 DEFARYTQFQISQQSASPSS-------STATFVQTGNPTVCLSSTSR---RWIIDSGATN 346
+F+R I++ + S S + PT + S +IDSGA+
Sbjct: 403 SKFSRVNNDHINESTVSSQYLSDDNELSLGQQQKESKPTHTIDSNDELPDHLLIDSGASQ 462
Query: 347 HMTGDSGIFLSFSSSSIHSSVTLADGSIVRVKGSG---CTTPVSTLPMSSVLYLPQFPCN 403
+ S +L ++ + ++ A + + G T L+ P +
Sbjct: 463 TLVR-SAHYLHHATPNSEINIVDAQKQDIPINAIGNLHFNFQNGTKTSIKALHTPNIAYD 521
Query: 404 LLSISKITRSLKCSVTFFPDSCVFQDLSTQRIIGRGRESDGL---YLLDEGVSKAS--TA 458
LLS+S++ + F ++ D + I + + L YL+ +SK +
Sbjct: 522 LLSLSELANQ-NITACFTRNTLERSDGTVLAPIVKHGDFYWLSKKYLIPSHISKLTINNV 580
Query: 459 YRTSSVSPFQ---LHCRLGHPSLGVLRKLCP------------QLESLSNFSCESCQFAK 503
++ SV+ + +H LGH + ++K + + S + C C K
Sbjct: 581 NKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGK 640
Query: 504 H--HRSVYLPRLN-KRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTFVDDYSRATWLYLMK 560
HR V RL + + F +H+D++GP K YF++F D+ +R W+Y +
Sbjct: 641 STKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLH 700
Query: 561 SRSE--LFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFMDKHGMIHQSSCIVT 618
R E + +F + A I+ QFN + +++ D EY + F G+ +
Sbjct: 701 DRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTAD 760
Query: 619 PQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRMPSTVLNGVIPYSVL 678
+ +GVAER NR L+ + L+ +P W AV + + N + S +
Sbjct: 761 SRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAG 820
Query: 679 FPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQKGYRCFSPALGRYL 738
+ + P FG V + P +K+ P+ + L SR GY + P+L + +
Sbjct: 821 LAGLDITTILP--FGQPVIVNNHNPD-SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTV 877
Query: 739 VSADVTFFED 748
+ + +D
Sbjct: 878 DTTNYVILQD 887
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 115 bits (288), Expect = 8e-25
Identities = 116/482 (24%), Positives = 216/482 (44%), Gaps = 54/482 (11%)
Query: 904 KQVVGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLA 963
K+V+ +++ K DG+ KAR VA+G Q T S ++ +SLA
Sbjct: 1281 KRVINSMFIFNKK--RDGTH---KARFVARGDIQHPDTYDTGMQSNTVHHYALMTSLSLA 1335
Query: 964 ATNHWPLFQLDVKNAFLHGDLQDEVYMEQPPGFVAQGECGKVCRLKKSLYGLKQSPRSWF 1023
N++ + QLD+ +A+L+ D+++E+Y+ PP G K+ RLKKS YGLKQS +W+
Sbjct: 1336 LDNNYYITQLDISSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSHYGLKQSGANWY 1392
Query: 1024 GRF-SDVVMEFGLRRSESDHTVFFKQTNKGCILLVVYVDDIVITGSDSEGIGNLKTFLQM 1082
S ++ + G+ VF + + ++VDD+++ D + T L+
Sbjct: 1393 ETIKSYLIKQCGMEEVRGWSCVF----KNSQVTICLFVDDMILFSKDLNANKKIITTLKK 1448
Query: 1083 KFQTKDLGI------LKY-FLGIEVVYSKNGIMISQRKYVLDMLAETGLMGSKP-CETPM 1134
++ TK + + ++Y LG+E+ Y QR + + E L P P+
Sbjct: 1449 QYDTKIINLGESDNEIQYDILGLEIKY--------QRGKYMKLGMENSLTEKIPKLNVPL 1500
Query: 1135 EP-GMKLTAEGVP---------FSDPQQYR-------RLVGKLNYLTVT-RPDIAFPVSV 1176
P G KL+A G P D +Y+ +L+G +Y+ R D+ + ++
Sbjct: 1501 NPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINT 1560
Query: 1177 VSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDH----GHMRVEAFSDADWAGSPMDR 1232
++Q + P+ + +++++ + +++ + ++ A SDA + P
Sbjct: 1561 LAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASYGNQPY-Y 1619
Query: 1233 KSTTGYCVFLGGNLISWKSKKQNVVARSSAEAEYRAMAQTTCMW--VGQILSEMGIERIS 1290
KS G L G +I KS K ++ S+ EAE A++++ + + ++ E+ + I
Sbjct: 1620 KSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELNKKPII 1679
Query: 1291 PMKLWCDNQAALHISSNPVFHERTKHIEVDCHFIREKLQQNLISTSYVRTGDQLADVFTK 1350
L I S R + +R+++ N + Y+ T +ADV TK
Sbjct: 1680 KGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTK 1739
Query: 1351 AL 1352
L
Sbjct: 1740 PL 1741
Score = 87.0 bits (214), Expect = 3e-16
Identities = 62/250 (24%), Positives = 109/250 (42%), Gaps = 8/250 (3%)
Query: 490 SLSNFSCESCQFAKH--HRSVYLPRLN-KRAMSLFHIVHSDVWGPCPVTSKLGYKYFVTF 546
S ++ C C K HR + RL + + F +H+D++GP K YF++F
Sbjct: 631 SAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISF 690
Query: 547 VDDYSRATWLYLMKSRSE--LFTIFCNFCAEIRTQFNCPIHILRSDNAKEYFSAPFRTFM 604
D+ ++ W+Y + R E + +F A I+ QF + +++ D EY + F+
Sbjct: 691 TDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFL 750
Query: 605 DKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTAAYLINRM 664
+K+G+ + + +GVAER NR L++ + + +P W A+ + + N +
Sbjct: 751 EKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSL 810
Query: 665 PSTVLNGVIPYSVLFPSCSLFPLPPKVFGCTCFVLDVRPQVTKLDPKSLKCVFLGYSRTQ 724
S + L P FG V D P +K+ P+ + L SR
Sbjct: 811 ASPKSKKSARQHAGLAGLDISTLLP--FGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNS 867
Query: 725 KGYRCFSPAL 734
GY + P+L
Sbjct: 868 YGYIIYLPSL 877
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 110 bits (276), Expect = 2e-23
Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 847 NKLSPASKSFVAALDSVSVPKSLSDALSHAGWRQAMEEEMLALEHNATWDLVPLPAGKQV 906
NKL+P S PKS+ AL GW QAM+EE+ AL N TW LVP P + +
Sbjct: 10 NKLNP-KYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNI 68
Query: 907 VGCKWVYTTKVNPDGSLARLKARLVAKGYAQTYGVDYTDTFSPVAKLSSVRILISLA 963
+GCKWV+ TK++ DG+L RLKARLVAKG+ Q G+ + +T+SPV + +++R ++++A
Sbjct: 69 LGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 76.3 bits (186), Expect = 6e-13
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 1162 YLTVTRPDIAFPVSVVSQFMSSPTDAHWEALIRIVKYLKKAPGRGIVYRDHGHMRVEAFS 1221
YLT+TRPD+ F V+ +SQF S+ A +A+ +++ Y+K G+G+ Y ++++AF+
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61
Query: 1222 DADWAGSPMDRKSTTGYC 1239
D+DWA P R+S TG+C
Sbjct: 62 DSDWASCPDTRRSVTGFC 79
>YCH5_YEAST (P25601) Transposon Ty5-1 16.0 kDa hypothetical protein
Length = 146
Score = 56.6 bits (135), Expect = 5e-07
Identities = 42/127 (33%), Positives = 61/127 (47%), Gaps = 8/127 (6%)
Query: 287 PEKRTVVM-SDDEFARYTQFQISQQSASPSSSTATFVQTGNPTVCLSST-----SRRWII 340
PE R + +D+ +R + ++ TA + + LSST S WI
Sbjct: 22 PEARIFKLYPNDKTSRSSSASVAIPDYETQGQTAGQITPKSWLCMLSSTVPATKSSEWIF 81
Query: 341 DSGATNHMTGDSGIFLSFSSSSIHSSVTLADGSIVRVKGSGCTTPVSTLPMSSVLYLPQF 400
D+G T+HM D IF SF+ SS V GSI + GSG T + T+ + V Y+P
Sbjct: 82 DTGCTSHMCHDRSIFSSFTRSSRKDFVRGVGGSI-PIMGSG-TVNIGTVQLHDVSYVPDL 139
Query: 401 PCNLLSI 407
P NL+S+
Sbjct: 140 PVNLISV 146
>POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 282
Score = 52.0 bits (123), Expect = 1e-05
Identities = 43/154 (27%), Positives = 64/154 (40%), Gaps = 11/154 (7%)
Query: 539 GYKYFVTFVDDYSRATWLYLMKSRSELFTIFCN-FCAEIRTQFNCPIHILRSDNAKEYFS 597
GYKY + FVD +S W+ ++ E + EI +F P +L +DN + S
Sbjct: 12 GYKYLLVFVDTFSG--WIEAFPTKKETAKVVTKKLLEEIFPRFGMP-QVLGTDNGPAFVS 68
Query: 598 APFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTA 657
+T D G+ + C PQ +G ER NR + E L + W + A
Sbjct: 69 KVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKL--TLATGSRDWVLLLPLA 126
Query: 658 AYLINRMPSTVLNGVIPYSVLF---PSCSLFPLP 688
Y P +G+ PY +L+ P FP P
Sbjct: 127 LYRARNTPGP--HGLTPYEILYGAPPPLVNFPDP 158
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 51.6 bits (122), Expect = 1e-05
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 11/154 (7%)
Query: 539 GYKYFVTFVDDYSRATWLYLMKSRSELFTIFCN-FCAEIRTQFNCPIHILRSDNAKEYFS 597
GYKY + F+D +S W+ ++ E + EI +F P +L +DN + S
Sbjct: 926 GYKYLLVFIDTFSG--WIEAFPTKKETAKVVTKKLLEEIFPRFGMP-QVLGTDNGPAFVS 982
Query: 598 APFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTA 657
+T D G+ + C PQ +G ER NR + E L + W + A
Sbjct: 983 KVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKL--TLATGSRDWVLLLPLA 1040
Query: 658 AYLINRMPSTVLNGVIPYSVLF---PSCSLFPLP 688
Y P +G+ PY +L+ P FP P
Sbjct: 1041 LYRARNTPGP--HGLTPYEILYGAPPPLVNFPDP 1072
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 51.6 bits (122), Expect = 1e-05
Identities = 43/154 (27%), Positives = 64/154 (40%), Gaps = 11/154 (7%)
Query: 539 GYKYFVTFVDDYSRATWLYLMKSRSELFTIFCN-FCAEIRTQFNCPIHILRSDNAKEYFS 597
GYKY + FVD +S W+ ++ E + EI +F P +L +DN + S
Sbjct: 931 GYKYLLVFVDTFSG--WVEAFPTKKETAKVVTKKLLEEIFPRFGMP-QVLGTDNGPAFVS 987
Query: 598 APFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTA 657
+T D G+ + C PQ +G ER NR + E L + W + A
Sbjct: 988 KVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKL--TLATGSRDWVLLLPLA 1045
Query: 658 AYLINRMPSTVLNGVIPYSVLF---PSCSLFPLP 688
Y P +G+ PY +L+ P FP P
Sbjct: 1046 LYRARNTPGP--HGLTPYEILYGAPPPLVNFPDP 1077
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 51.6 bits (122), Expect = 1e-05
Identities = 43/154 (27%), Positives = 64/154 (40%), Gaps = 11/154 (7%)
Query: 539 GYKYFVTFVDDYSRATWLYLMKSRSELFTIFCN-FCAEIRTQFNCPIHILRSDNAKEYFS 597
GYKY + FVD +S W+ ++ E + EI +F P +L +DN + S
Sbjct: 931 GYKYLLVFVDTFSG--WVEAFPTKKETAKVVTKKLLEEIFPRFGMP-QVLGTDNGPAFVS 987
Query: 598 APFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTA 657
+T D G+ + C PQ +G ER NR + E L + W + A
Sbjct: 988 KVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKL--TLATGSRDWVLLLPLA 1045
Query: 658 AYLINRMPSTVLNGVIPYSVLF---PSCSLFPLP 688
Y P +G+ PY +L+ P FP P
Sbjct: 1046 LYRARNTPGP--HGLTPYEILYGAPPPLVNFPDP 1077
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 51.2 bits (121), Expect = 2e-05
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 11/154 (7%)
Query: 539 GYKYFVTFVDDYSRATWLYLMKSRSELFTIFCN-FCAEIRTQFNCPIHILRSDNAKEYFS 597
GYKY + F+D +S W+ ++ E + EI +F P +L +DN + S
Sbjct: 931 GYKYLLVFIDTFSG--WVEAFPTKKETAKVVTKKLLEEIFPRFGMP-QVLGTDNGPAFVS 987
Query: 598 APFRTFMDKHGMIHQSSCIVTPQQNGVAERKNRHLMEVAQALMFQMKVPKCFWADAVLTA 657
+T D G+ + C PQ +G ER NR + E L + W + A
Sbjct: 988 KVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKL--TLATGSRDWVLLLPLA 1045
Query: 658 AYLINRMPSTVLNGVIPYSVLF---PSCSLFPLP 688
Y P +G+ PY +L+ P FP P
Sbjct: 1046 LYRARNTPGP--HGLTPYEILYGAPPPLVNFPDP 1077
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,564,526
Number of Sequences: 164201
Number of extensions: 6835987
Number of successful extensions: 27588
Number of sequences better than 10.0: 210
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 24304
Number of HSP's gapped (non-prelim): 1789
length of query: 1371
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1248
effective length of database: 39,777,331
effective search space: 49642109088
effective search space used: 49642109088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0058b.2