BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0058a.4
(457 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
FIBA_BOVIN (P02672) Fibrinogen alpha chain [Contains: Fibrinopep... 35 0.52
ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (1... 33 2.0
ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (1... 33 2.0
YGX7_YEAST (P53076) Hypothetical 108.2 kDa protein in SAP4-OST5 ... 32 3.4
PO5L_HUMAN (Q06416) POU domain, class 5, transcription factor 1-... 32 3.4
PO5N_HUMAN (Q9BZW0) POU domain, class 5, transcription factor 1-... 32 4.4
PO5M_HUMAN (Q9BZV7) POU domain, class 5, transcription factor 1-... 32 4.4
PO51_PANTR (Q7YR49) POU domain, class 5, transcription factor 1 ... 32 4.4
PO51_HUMAN (Q01860) POU domain, class 5, transcription factor 1 ... 32 4.4
MP44_YLDV (Q9DHR2) Probable metalloendopeptidase G1-type (EC 3.4... 32 4.4
RNDI_DICDI (Q7M438) Ribonuclease DdI precursor (EC 3.1.27.1) (RN... 31 5.8
UTRO_HUMAN (P46939) Utrophin (Dystrophin-related protein 1) (DRP... 31 7.6
RRPO_PVXHB (Q07630) RNA replication protein (165 kDa protein) (O... 31 7.6
PR19_MOUSE (Q99KP6) PRP19/PSO4 homolog (Nuclear matrix protein 2... 30 9.9
PR19_HUMAN (Q9UMS4) PRP19/PSO4 homolog (Nuclear matrix protein 2... 30 9.9
MP44_VARV (P32991) Metalloendopeptidase G1 (EC 3.4.24.-) 30 9.9
MP44_VACCV (P16713) Metalloendopeptidase G1 (EC 3.4.24.-) 30 9.9
MP44_VACCT (P68493) Metalloendopeptidase G1 (EC 3.4.24.-) 30 9.9
MP44_VACCC (P21022) Metalloendopeptidase G1 (EC 3.4.24.-) 30 9.9
MP44_VACCA (P68492) Metalloendopeptidase G1 (EC 3.4.24.-) 30 9.9
>FIBA_BOVIN (P02672) Fibrinogen alpha chain [Contains:
Fibrinopeptide A] (Fragment)
Length = 596
Score = 34.7 bits (78), Expect = 0.52
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 341 TWNPGGCSDLTATTW------PTSFQQWDPGGGFYCPYPDNAGKWIKGR 383
TWNPG +A TW P S W+PG P P +AG W GR
Sbjct: 293 TWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGR----PEPGSAGTWNPGR 337
Score = 34.7 bits (78), Expect = 0.52
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 341 TWNPGGCSDLTATTW------PTSFQQWDPGGGFYCPYPDNAGKWIKGR 383
TWNPG +A TW P S W+PG P P +AG W GR
Sbjct: 306 TWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGR----PEPGSAGTWNPGR 350
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155
kDa immediate-early protein)
Length = 1487
Score = 32.7 bits (73), Expect = 2.0
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 73 GDEEPPLGRSRTGAKNAGQGYTFEEVKIFFLALLDLCRQISRLQHPLPVSQVDFIHLTKM 132
G + PP+GR R G + +++ +I A + + Q P+PV + TK
Sbjct: 422 GSDPPPMGRVRYGGTGDSRDGLWDDPEIVLAA-----SRYAEAQAPVPVFVPEMGDSTKQ 476
Query: 133 YVVLQAWIQHWEFKDFVNKRQEQFLWHRPAGNTLISCHFWPHGSRGLIFHGDSITGQVKD 192
Y L + +E ++ ++ Q L + N C + H RG HG ITG V +
Sbjct: 477 YNALVRMV--FESREAMSWLQNSKLSGQDQ-NLAQFCQKFIHAPRG---HGSFITGSVAN 530
Query: 193 LWDH 196
H
Sbjct: 531 PLPH 534
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155
kDa immediate-early protein)
Length = 1487
Score = 32.7 bits (73), Expect = 2.0
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 73 GDEEPPLGRSRTGAKNAGQGYTFEEVKIFFLALLDLCRQISRLQHPLPVSQVDFIHLTKM 132
G + PP+GR R G + +++ +I A + + Q P+PV + TK
Sbjct: 422 GSDPPPMGRVRYGGTGDSRDGLWDDPEIVLAA-----SRYAEAQAPVPVFVPEMGDSTKQ 476
Query: 133 YVVLQAWIQHWEFKDFVNKRQEQFLWHRPAGNTLISCHFWPHGSRGLIFHGDSITGQVKD 192
Y L + +E ++ ++ Q L + N C + H RG HG ITG V +
Sbjct: 477 YNALVRMV--FESREAMSWLQNSKLSGQDQ-NLAQFCQKFIHAPRG---HGSFITGSVAN 530
Query: 193 LWDH 196
H
Sbjct: 531 PLPH 534
>YGX7_YEAST (P53076) Hypothetical 108.2 kDa protein in SAP4-OST5
intergenic region
Length = 958
Score = 32.0 bits (71), Expect = 3.4
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 204 YYCMLLASWLEEEQVLELLSNLLKAQDLLSA---QAKRLQSQLDLLAGHWENPQSQLPKS 260
Y M+ S +++ +E L +LK Q+L + K QS D +G N + L S
Sbjct: 815 YLVMIKKSSSKDDDEIENL--ILKGQELSNEFIYDTKIPQSLRDRFSGQLSNVSALLAYS 872
Query: 261 RPLIEVPKQKSNFDSHGLLK 280
PL+E PK+ S + S L+
Sbjct: 873 NPLVEAPKEISGYLSDEYLQ 892
>PO5L_HUMAN (Q06416) POU domain, class 5, transcription factor
1-like protein 1 (Octamer binding protein 3-like)
Length = 359
Score = 32.0 bits (71), Expect = 3.4
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 208 LLASWLEEEQVLELLSNLLKAQDLLSAQAKRLQSQLDLLAGHWENPQSQLPK 259
LL W+EE E L + KA+ L+ A+ ++ S + + G+ EN Q PK
Sbjct: 203 LLQKWVEEADNNENLQEICKAETLMQARKRKRTSIENRVRGNLENLFLQCPK 254
>PO5N_HUMAN (Q9BZW0) POU domain, class 5, transcription factor
1-like protein 3
Length = 286
Score = 31.6 bits (70), Expect = 4.4
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 208 LLASWLEEEQVLELLSNLLKAQDLLSAQAKRLQSQLDLLAGHWENPQSQLPK 259
LL W+EE E L KA+ LL A+ ++ S + + G+ EN Q PK
Sbjct: 196 LLQKWVEEADNNENLQETCKAETLLQARKRKRTSIENRVRGNLENLFLQCPK 247
>PO5M_HUMAN (Q9BZV7) POU domain, class 5, transcription factor
1-like protein 2
Length = 359
Score = 31.6 bits (70), Expect = 4.4
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 208 LLASWLEEEQVLELLSNLLKAQDLLSAQAKRLQSQLDLLAGHWENPQSQLPK 259
LL W+EE E L + KA+ L+ A+ ++ S + + G+ EN Q PK
Sbjct: 203 LLQKWVEEADNDENLQEICKAETLMQARKRKRTSIENRVRGNLENLFLQCPK 254
>PO51_PANTR (Q7YR49) POU domain, class 5, transcription factor 1
(Octamer-binding transcription factor 3) (Oct-3)
Length = 360
Score = 31.6 bits (70), Expect = 4.4
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 208 LLASWLEEEQVLELLSNLLKAQDLLSAQAKRLQSQLDLLAGHWENPQSQLPK 259
LL W+EE E L + KA+ L+ A+ ++ S + + G+ EN Q PK
Sbjct: 203 LLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPK 254
>PO51_HUMAN (Q01860) POU domain, class 5, transcription factor 1
(Octamer-binding transcription factor 3) (Oct-3) (Oct-4)
Length = 360
Score = 31.6 bits (70), Expect = 4.4
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 208 LLASWLEEEQVLELLSNLLKAQDLLSAQAKRLQSQLDLLAGHWENPQSQLPK 259
LL W+EE E L + KA+ L+ A+ ++ S + + G+ EN Q PK
Sbjct: 203 LLQKWVEEADNNENLQEICKAETLVQARKRKRTSIENRVRGNLENLFLQCPK 254
>MP44_YLDV (Q9DHR2) Probable metalloendopeptidase G1-type (EC
3.4.24.-)
Length = 590
Score = 31.6 bits (70), Expect = 4.4
Identities = 22/74 (29%), Positives = 38/74 (50%), Gaps = 6/74 (8%)
Query: 164 NTLISCHFWPHGSRGLIFHGDSITGQVKDLWDHYMFGNREYYCMLLASWLEEEQV----- 218
NTLIS F + R D I +K+L + Y F N ++CM + ++LE +
Sbjct: 84 NTLISWFFNNNKLRDNFCLND-IKNHIKELENEYYFRNEVFHCMDVLTFLENGDLYNGGR 142
Query: 219 LELLSNLLKAQDLL 232
+++L+NL ++L
Sbjct: 143 IDMLNNLESVNNML 156
>RNDI_DICDI (Q7M438) Ribonuclease DdI precursor (EC 3.1.27.1) (RNase
DdI)
Length = 223
Score = 31.2 bits (69), Expect = 5.8
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 171 FWPHGSRGLIFHGD-SITGQVKDLWDHYMFGNREYYCMLLASWLEEEQVLELLSNLLKAQ 229
FW H HG SITG + D+ D++ G + Y + + LE E + SN K
Sbjct: 109 FWTHEFSK---HGTCSITGPITDIHDYFATGIKLYTEFNITAALESENIYPSDSNTYKPV 165
Query: 230 DLLSA 234
D+ +A
Sbjct: 166 DITNA 170
>UTRO_HUMAN (P46939) Utrophin (Dystrophin-related protein 1) (DRP1)
(DRP)
Length = 3433
Score = 30.8 bits (68), Expect = 7.6
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 223 SNLLKAQDLLSAQAKRLQSQLDLLAGHWENPQSQLPKSRPLIEVPKQKSNFD 274
S L+ LL RL++++ +L H + +SQL + R L+E P+ S +
Sbjct: 3312 SELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHRLRQLLEQPESDSRIN 3363
>RRPO_PVXHB (Q07630) RNA replication protein (165 kDa protein) (ORF
1) [Contains: RNA-directed RNA polymerase (EC 2.7.7.48);
Probable helicase]
Length = 1456
Score = 30.8 bits (68), Expect = 7.6
Identities = 13/31 (41%), Positives = 17/31 (53%)
Query: 27 NGGNAAAHEFLHKLLIAIGKTEWELENQGLL 57
+GG A HEF H + +GK +W GLL
Sbjct: 209 HGGGAYHHEFSHLQSVKVGKIKWRDPKDGLL 239
>PR19_MOUSE (Q99KP6) PRP19/PSO4 homolog (Nuclear matrix protein 200)
(Nuclear matrix protein SNEV)
Length = 504
Score = 30.4 bits (67), Expect = 9.9
Identities = 20/69 (28%), Positives = 32/69 (45%), Gaps = 4/69 (5%)
Query: 127 IHLTKMYVVLQAWIQHWEFKDFVNKRQEQFLWHRPAGNTLISCHFWPHGSRGLIFHGDSI 186
+H T Y++ + Q+W F D R + +G +L F P GLIF ++
Sbjct: 314 LHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPD---GLIFGTGTM 370
Query: 187 TGQVKDLWD 195
Q+K +WD
Sbjct: 371 DSQIK-IWD 378
>PR19_HUMAN (Q9UMS4) PRP19/PSO4 homolog (Nuclear matrix protein 200)
(hPso4)
Length = 504
Score = 30.4 bits (67), Expect = 9.9
Identities = 20/69 (28%), Positives = 32/69 (45%), Gaps = 4/69 (5%)
Query: 127 IHLTKMYVVLQAWIQHWEFKDFVNKRQEQFLWHRPAGNTLISCHFWPHGSRGLIFHGDSI 186
+H T Y++ + Q+W F D R + +G +L F P GLIF ++
Sbjct: 314 LHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHPD---GLIFGTGTM 370
Query: 187 TGQVKDLWD 195
Q+K +WD
Sbjct: 371 DSQIK-IWD 378
>MP44_VARV (P32991) Metalloendopeptidase G1 (EC 3.4.24.-)
Length = 591
Score = 30.4 bits (67), Expect = 9.9
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 165 TLISCHFWPHGSRGLIFHGDSITGQVKDLWDHYMFGNREYYCMLLASWLEEEQV-----L 219
TL+S F+ +G F SI +K+L + Y F N ++CM + ++L + +
Sbjct: 84 TLVSW-FFSNGKLKDNFSLSSIRFHIKELENEYYFRNEVFHCMDILTFLSGGDLYNGGRI 142
Query: 220 ELLSNLLKAQDLLSAQAKRL 239
+++ NL +D+L + +R+
Sbjct: 143 DMIDNLNIVRDMLVNRMQRI 162
>MP44_VACCV (P16713) Metalloendopeptidase G1 (EC 3.4.24.-)
Length = 591
Score = 30.4 bits (67), Expect = 9.9
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 165 TLISCHFWPHGSRGLIFHGDSITGQVKDLWDHYMFGNREYYCMLLASWLEEEQV-----L 219
TL+S F+ +G F SI +K+L + Y F N ++CM + ++L + +
Sbjct: 84 TLVSW-FFSNGKLKDNFSLSSIRFHIKELENEYYFRNEVFHCMDILTFLSGGDLYNGGRI 142
Query: 220 ELLSNLLKAQDLLSAQAKRL 239
+++ NL +D+L + +R+
Sbjct: 143 DMIDNLNIVRDMLVNRMQRI 162
>MP44_VACCT (P68493) Metalloendopeptidase G1 (EC 3.4.24.-)
Length = 591
Score = 30.4 bits (67), Expect = 9.9
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 165 TLISCHFWPHGSRGLIFHGDSITGQVKDLWDHYMFGNREYYCMLLASWLEEEQV-----L 219
TL+S F+ +G F SI +K+L + Y F N ++CM + ++L + +
Sbjct: 84 TLVSW-FFSNGKLKDNFSLSSIRFHIKELENEYYFRNEVFHCMDILTFLSGGDLYNGGRI 142
Query: 220 ELLSNLLKAQDLLSAQAKRL 239
+++ NL +D+L + +R+
Sbjct: 143 DMIDNLNIVRDMLVNRMQRI 162
>MP44_VACCC (P21022) Metalloendopeptidase G1 (EC 3.4.24.-)
Length = 591
Score = 30.4 bits (67), Expect = 9.9
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 165 TLISCHFWPHGSRGLIFHGDSITGQVKDLWDHYMFGNREYYCMLLASWLEEEQV-----L 219
TL+S F+ +G F SI +K+L + Y F N ++CM + ++L + +
Sbjct: 84 TLVSW-FFSNGKLKDNFSLSSIRFHIKELENEYYFRNEVFHCMDILTFLSGGDLYNGGRI 142
Query: 220 ELLSNLLKAQDLLSAQAKRL 239
+++ NL +D+L + +R+
Sbjct: 143 DMIDNLNIVRDMLVNRMQRI 162
>MP44_VACCA (P68492) Metalloendopeptidase G1 (EC 3.4.24.-)
Length = 591
Score = 30.4 bits (67), Expect = 9.9
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 165 TLISCHFWPHGSRGLIFHGDSITGQVKDLWDHYMFGNREYYCMLLASWLEEEQV-----L 219
TL+S F+ +G F SI +K+L + Y F N ++CM + ++L + +
Sbjct: 84 TLVSW-FFSNGKLKDNFSLSSIRFHIKELENEYYFRNEVFHCMDILTFLSGGDLYNGGRI 142
Query: 220 ELLSNLLKAQDLLSAQAKRL 239
+++ NL +D+L + +R+
Sbjct: 143 DMIDNLNIVRDMLVNRMQRI 162
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,710,220
Number of Sequences: 164201
Number of extensions: 2486870
Number of successful extensions: 5252
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5239
Number of HSP's gapped (non-prelim): 26
length of query: 457
length of database: 59,974,054
effective HSP length: 114
effective length of query: 343
effective length of database: 41,255,140
effective search space: 14150513020
effective search space used: 14150513020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0058a.4