BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0057b.6
(396 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S3AA_BACSU (Q01367) Stage III sporulation protein AA 42 0.003
RPS2_ARATH (Q42484) Disease resistance protein RPS2 (Resistance ... 36 0.20
YAWG_SCHPO (Q10190) Hypothetical GTP-binding protein C3F10.16c i... 35 0.44
RFC1_MOUSE (P35601) Activator 1 140 kDa subunit (Replication fac... 35 0.44
ENGA_RALSO (Q8Y026) GTP-binding protein engA 35 0.44
RP1_MOUSE (P56716) Oxygen-regulated protein 1 (Retinitis pigment... 34 0.57
ERA_ANASP (Q8YYD8) GTP-binding protein era homolog 34 0.75
ENGA_BORPE (Q7VWL4) GTP-binding protein engA 34 0.75
ENGA_BORPA (Q7W6Q0) GTP-binding protein engA 34 0.75
ENGA_BORBR (Q7WHN4) GTP-binding protein engA 34 0.75
ERA_YERPE (Q8ZD71) GTP-binding protein era homolog 33 0.97
YOR1_YEAST (P53049) Oligomycin resistance ATP-dependent permease... 33 1.3
YGJ9_YEAST (P53145) Hypothetical GTP-binding protein in SEH1-PRP... 33 1.3
UGPC_ECOLI (P10907) SN-glycerol-3-phosphate transport ATP-bindin... 33 1.3
RFC1_HUMAN (P35251) Activator 1 140 kDa subunit (Replication fac... 33 1.3
EGC2_VIBPA (Q87FP9) Probable GTPase engC protein 2 (EC 3.6.1.-) 33 1.3
ABG4_HUMAN (Q9H172) ATP-binding cassette, sub-family G, member 4 33 1.3
SSAN_SALTY (P74857) Probable secretion system apparatus ATP synt... 33 1.7
Y124_THEMA (Q9WXX8) Probable metal transport system ATP-binding ... 32 2.2
SEP2_MOUSE (P42208) Septin 2 (NEDD5 protein) 32 2.2
>S3AA_BACSU (Q01367) Stage III sporulation protein AA
Length = 307
Score = 42.0 bits (97), Expect = 0.003
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 46 LPSVASLNLLSDSWDFHI-DRFLPFLTENTDFTVIGVIGPPGVGKSTIMNELYGFDSSSP 104
L +AS N+ I + LP+L +N+ + +IGPP GK+T++ +L S+
Sbjct: 106 LRDIASFNIRIARQKLGIAEPLLPYLYQNSWLNTL-IIGPPQTGKTTLLRDLARLSSTGK 164
Query: 105 GMLPPFATQSEENRAMARHCSTGIEPRISAERIILLDTQP 144
+ P T + R+ C GI +RI +LD P
Sbjct: 165 KNMLPVKTGIVDERSEIAGCLRGIPQHQFGQRIDVLDACP 204
>RPS2_ARATH (Q42484) Disease resistance protein RPS2 (Resistance to
Pseudomonas syringae protein 2)
Length = 909
Score = 35.8 bits (81), Expect = 0.20
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 63 IDRFLPFLTENTDFTVIGVIGPPGVGKSTIMNEL 96
+++ L FL+E + +IGV GP GVGK+T+M +
Sbjct: 162 MEQVLEFLSEEEERGIIGVYGPGGVGKTTLMQSI 195
>YAWG_SCHPO (Q10190) Hypothetical GTP-binding protein C3F10.16c in
chromosome I
Length = 616
Score = 34.7 bits (78), Expect = 0.44
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 18/154 (11%)
Query: 37 DDSAQHRSRLPSVASLNLLSDSWDFHIDRFLPFLTENTDFTVIGVIGPPGVGKSTIMNEL 96
D++ H SR +A+L +L ++ +F L + G++G P VGKS+ +N L
Sbjct: 269 DENDVHSSR---IATLKVLEGIFE----KFASTLPDGKTKMTFGLVGYPNVGKSSTINAL 321
Query: 97 YGFD----SSSPGMLPPFATQSEENRAMARHCSTGIEPRISAERIILLDTQPVFSASVLA 152
G SS+PG F T + + C + P + + L+ V L
Sbjct: 322 VGSKKVSVSSTPGKTKHFQTINLSEKVSLLDCPGLVFPSFATTQADLV-LDGVLPIDQLR 380
Query: 153 EMMRPDGSSTVSVLSGESMSAELAHEIMGIQLAV 186
E P S L E + E+ + I++ +
Sbjct: 381 EYTGP------SALMAERIPKEVLETLYTIRIRI 408
>RFC1_MOUSE (P35601) Activator 1 140 kDa subunit (Replication factor
C large subunit) (A1 140 kDa subunit) (RF-C 140 kDa
subunit) (Activator 1 large subunit) (A1-P145)
(Differentiation specific element binding protein)
(ISRE-binding protein)
Length = 1131
Score = 34.7 bits (78), Expect = 0.44
Identities = 21/81 (25%), Positives = 36/81 (43%), Gaps = 11/81 (13%)
Query: 72 ENTDFTVIGVIGPPGVGKSTIMN-----------ELYGFDSSSPGMLPPFATQSEENRAM 120
+ + F + GPPGVGK+T + EL D+ S L +S N ++
Sbjct: 624 DGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSI 683
Query: 121 ARHCSTGIEPRISAERIILLD 141
++G P +SA +++D
Sbjct: 684 KGFYTSGAAPSVSARHALIMD 704
>ENGA_RALSO (Q8Y026) GTP-binding protein engA
Length = 447
Score = 34.7 bits (78), Expect = 0.44
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 27/163 (16%)
Query: 78 VIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGIEPRISAERI 137
VI ++G P VGKST+ N L + +P RH G R+
Sbjct: 4 VIALVGRPNVGKSTLFNRLTRSRDALVADMPGLTRD--------RHYGEG---RVGERPF 52
Query: 138 ILLDT---QPVFSASVLAEMMRPDGSSTVS------VLSGESMSAELAHEIMGIQLAVLL 188
I +DT +PV ++AEM + + V ++ G A I L
Sbjct: 53 IAIDTGGFEPVAKEGIVAEMAKQTRQAVVEADVVIFIVDGRLGLAPQDRVIAD----YLR 108
Query: 189 ASVCHILLVVSEGVHDDCMWHLMLTVDLLKHGIPDPSLLASSH 231
+ ILL V++ + M + + D + G+ DP ++S+H
Sbjct: 109 KTGRRILLAVNKA---EGMKYTAVATDFYELGLGDPRAISSAH 148
>RP1_MOUSE (P56716) Oxygen-regulated protein 1 (Retinitis pigmentosa
RP1 protein homolog)
Length = 2095
Score = 34.3 bits (77), Expect = 0.57
Identities = 41/168 (24%), Positives = 66/168 (38%), Gaps = 32/168 (19%)
Query: 228 ASSHSQSSSSGHEKD----------NKLSGREYMATPVFVHTKLHDQEFTPKNFVQLRKT 277
ASS+S + SG EK+ KL G+ + P F H +H + P N V+
Sbjct: 1578 ASSNSHNDDSGQEKEPTRGIVKRAIEKLYGKAEIIKPPFFHGSIHKSQVCPYNSVE---- 1633
Query: 278 LIQYFKPSSFVREHAEHKPEEHISSSMVHDSPMDSNVPSLFAIPFKKKDENPRAQH--GS 335
+Q K ++F E + + +SS V S SL F + D N S
Sbjct: 1634 -VQCAKKTNFY----ESECQSLVSSEQVSRS-------SLIFQEFPQVDANGMGDSFGDS 1681
Query: 336 YISALWK--LRDQILSMKSPSFTRPVSEREWLKNSAKIWEQVKNSPTM 381
I + K D++ + K + + +WL +W ++P M
Sbjct: 1682 SIENVTKSSAHDRVFTEKENG--KLIDNGKWLLRENHLWRVSSDNPGM 1727
>ERA_ANASP (Q8YYD8) GTP-binding protein era homolog
Length = 324
Score = 33.9 bits (76), Expect = 0.75
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 79 IGVIGPPGVGKSTIMNELYG 98
IG+IG P VGKST+MN+L G
Sbjct: 35 IGIIGRPNVGKSTLMNQLVG 54
>ENGA_BORPE (Q7VWL4) GTP-binding protein engA
Length = 451
Score = 33.9 bits (76), Expect = 0.75
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 78 VIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGIEPRISAERI 137
V+ ++G P VGKST+ N L S ++ F+ + + RH G R+
Sbjct: 6 VVALVGRPNVGKSTLFNRL---TRSRAALVADFSGLTRD-----RHYGEG---RVGDTPF 54
Query: 138 ILLDT---QPVFSASVLAEMMR 156
+++DT +PV +LAEM R
Sbjct: 55 LVIDTGGFEPVAKDGILAEMAR 76
>ENGA_BORPA (Q7W6Q0) GTP-binding protein engA
Length = 451
Score = 33.9 bits (76), Expect = 0.75
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 78 VIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGIEPRISAERI 137
V+ ++G P VGKST+ N L S ++ F+ + + RH G R+
Sbjct: 6 VVALVGRPNVGKSTLFNRL---TRSRAALVADFSGLTRD-----RHYGEG---RVGDTPF 54
Query: 138 ILLDT---QPVFSASVLAEMMR 156
+++DT +PV +LAEM R
Sbjct: 55 LVIDTGGFEPVAKDGILAEMAR 76
>ENGA_BORBR (Q7WHN4) GTP-binding protein engA
Length = 451
Score = 33.9 bits (76), Expect = 0.75
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 78 VIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGIEPRISAERI 137
V+ ++G P VGKST+ N L S ++ F+ + + RH G R+
Sbjct: 6 VVALVGRPNVGKSTLFNRL---TRSRAALVADFSGLTRD-----RHYGEG---RVGDTPF 54
Query: 138 ILLDT---QPVFSASVLAEMMR 156
+++DT +PV +LAEM R
Sbjct: 55 LVIDTGGFEPVAKDGILAEMAR 76
>ERA_YERPE (Q8ZD71) GTP-binding protein era homolog
Length = 303
Score = 33.5 bits (75), Expect = 0.97
Identities = 20/52 (38%), Positives = 26/52 (49%), Gaps = 4/52 (7%)
Query: 72 ENTDFTVIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARH 123
E T I ++G P VGKST++NEL G S P Q+ +R M H
Sbjct: 5 EKTYCGFIAIVGRPNVGKSTLLNELLGQKISITSRKP----QTTRHRIMGIH 52
>YOR1_YEAST (P53049) Oligomycin resistance ATP-dependent permease YOR1
Length = 1477
Score = 33.1 bits (74), Expect = 1.3
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 54 LLSDSWDFHIDRFLPFLTENTDFTV-----IGVIGPPGVGKSTIMNELYGFDSSSPGML 107
++ ++ DF LP + +N + + IG+ G G GKSTIM+ LY + + G +
Sbjct: 1213 IIFENVDFAYRPGLPIVLKNLNLNIKSGEKIGICGRTGAGKSTIMSALYRLNELTAGKI 1271
>YGJ9_YEAST (P53145) Hypothetical GTP-binding protein in SEH1-PRP20
intergenic region
Length = 640
Score = 33.1 bits (74), Expect = 1.3
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 67 LPFLTENTDFTVIGVIGPPGVGKSTIMNELYGFD----SSSPGMLPPFATQSEENRAMAR 122
LP L IG++G P VGKS+ +N L G SS+PG F T + M
Sbjct: 327 LPPLPGQPPLINIGLVGYPNVGKSSTINSLVGAKKVSVSSTPGKTKHFQTIKLSDSVMLC 386
Query: 123 HCSTGIEPRIS 133
C + P +
Sbjct: 387 DCPGLVFPNFA 397
>UGPC_ECOLI (P10907) SN-glycerol-3-phosphate transport ATP-binding
protein ugpC
Length = 356
Score = 33.1 bits (74), Expect = 1.3
Identities = 16/54 (29%), Positives = 26/54 (47%)
Query: 52 LNLLSDSWDFHIDRFLPFLTENTDFTVIGVIGPPGVGKSTIMNELYGFDSSSPG 105
L ++ SWD P + D I ++GP G GKST++ + G + + G
Sbjct: 6 LQAVTKSWDGKTQVIKPLTLDVADGEFIVMVGPSGCGKSTLLRMVAGLERVTEG 59
>RFC1_HUMAN (P35251) Activator 1 140 kDa subunit (Replication factor
C large subunit) (A1 140 kDa subunit) (RF-C 140 kDa
subunit) (Activator 1 large subunit) (DNA-binding
protein PO-GA)
Length = 1148
Score = 33.1 bits (74), Expect = 1.3
Identities = 21/81 (25%), Positives = 35/81 (42%), Gaps = 11/81 (13%)
Query: 72 ENTDFTVIGVIGPPGVGKSTIMN-----------ELYGFDSSSPGMLPPFATQSEENRAM 120
+N+ F + GPPGVGK+T + EL D+ S L +S N ++
Sbjct: 640 DNSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNRSDTRSKSSLKAIVAESLNNTSI 699
Query: 121 ARHCSTGIEPRISAERIILLD 141
S G +S + +++D
Sbjct: 700 KGFYSNGAASSVSTKHALIMD 720
>EGC2_VIBPA (Q87FP9) Probable GTPase engC protein 2 (EC 3.6.1.-)
Length = 358
Score = 33.1 bits (74), Expect = 1.3
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 79 IGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGIEPRISAERII 138
+ IG GVGKST++N L G S G + E+ + RH +T + I
Sbjct: 199 VAFIGSSGVGKSTLVNALLGQQEQSTGHI-------REDDSKGRHTTTSRSIHLLPAGGI 251
Query: 139 LLDT 142
L+DT
Sbjct: 252 LIDT 255
>ABG4_HUMAN (Q9H172) ATP-binding cassette, sub-family G, member 4
Length = 646
Score = 33.1 bits (74), Expect = 1.3
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 78 VIGVIGPPGVGKSTIMNELYGFDSS 102
+IG++GP G GKST MN L G+ S
Sbjct: 97 LIGIMGPSGAGKSTFMNILAGYRES 121
>SSAN_SALTY (P74857) Probable secretion system apparatus ATP
synthase ssaN (EC 3.6.3.14)
Length = 433
Score = 32.7 bits (73), Expect = 1.7
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 12/110 (10%)
Query: 79 IGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAM---------ARHCSTGIE 129
+G+ PGVGKST++ L + +L + E R + C +
Sbjct: 158 VGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVV- 216
Query: 130 PRISAERIILLDTQPVFSASVLAEMMRPDGSSTVSVLSGESMSAELAHEI 179
+++R L + +F A+ +AE R +G V + + A A EI
Sbjct: 217 --ATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREI 264
>Y124_THEMA (Q9WXX8) Probable metal transport system ATP-binding
protein TM0124
Length = 240
Score = 32.3 bits (72), Expect = 2.2
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 60 DFHIDRFLPFLTENTDFTVIGVIGPPGVGKSTIMNELYG 98
DF I + + F E +F +G+IGP G GK+T++ L G
Sbjct: 15 DFEILKNVTFSVEEGEF--VGIIGPNGAGKTTLVRILVG 51
>SEP2_MOUSE (P42208) Septin 2 (NEDD5 protein)
Length = 361
Score = 32.3 bits (72), Expect = 2.2
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 75 DFTVIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGIEPRISA 134
+FT++ V+G G+GKST++N L+ D P + P A + E + IE R
Sbjct: 37 EFTLM-VVGESGLGKSTLINSLFLTD-LYPERIIPGAAEKIERTVQIEASTVEIEERGVK 94
Query: 135 ERIILLDT 142
R+ ++DT
Sbjct: 95 LRLTVVDT 102
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.316 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,506,514
Number of Sequences: 164201
Number of extensions: 2073386
Number of successful extensions: 7921
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 7879
Number of HSP's gapped (non-prelim): 94
length of query: 396
length of database: 59,974,054
effective HSP length: 112
effective length of query: 284
effective length of database: 41,583,542
effective search space: 11809725928
effective search space used: 11809725928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0057b.6