BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0055.11
         (605 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP13...    40  0.013
YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I      37  0.15
POLN_EEVVT (P27282) Nonstructural polyprotein [Contains: Nonstru...    33  1.6
YFI2_YEAST (P43595) Hypothetical 22.4 kDa protein in GCN20-CMK1 ...    33  2.2
POLN_EEVVP (P36328) Nonstructural polyprotein [Contains: Nonstru...    32  3.7
PAB3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bin...    32  3.7
Y941_METJA (Q57711) Hypothetical protein MJ0941                        32  6.3

>LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)
           (Leucine-rich PPR-motif containing protein)
          Length = 1273

 Score = 40.4 bits (93), Expect = 0.013
 Identities = 45/211 (21%), Positives = 97/211 (45%), Gaps = 17/211 (8%)

Query: 319 DVVLWSSIIGSYSQRGDSYKALTLFNKMLTEETEPNYVTLLAVISACTNLSSLKHGCGLH 378
           DV  +++++  Y Q    +       KM     +PN VT   +I++  N+  ++    + 
Sbjct: 40  DVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCNVGDIEGASKIL 99

Query: 379 GFILKFGLSFSISLSNALMNMYAKCGCLEGSLQIFLEMQNR----DSISWSTMISAYGLH 434
           GF+    L  + ++ +AL+  +A+ G +E +  I   M++        ++  +++AY   
Sbjct: 100 GFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLALLNAYAEK 159

Query: 435 G---HGEQALKLFSEMKERGVKPDALTFLAVLSACNHAGLVTEGQQVFKQVNADYE-IPL 490
           G   H +Q L+   + +   +  D    L ++ + + AG ++  Q+ +K+   +   IP 
Sbjct: 160 GDIDHVKQTLEKVEKFELHLMDRD---LLQIIFSFSKAGYLSMSQKFWKKFTCERRYIPD 216

Query: 491 TIEHYACLVDLLGRSGKVED-ALEIMRTMPM 520
            +     LV     + K+ED AL+I+   P+
Sbjct: 217 AMNLILLLV-----TEKLEDVALQILLACPV 242



 Score = 34.3 bits (77), Expect = 0.97
 Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 180 DGRVEHSVVLSTALVDFYFRCDDALMASRVFDGMEVKN----EVSWTAMISGCIANLDYD 235
           +  ++ + V    L+  Y    D   AS++   M+ K+    E  ++A+++G     D +
Sbjct: 69  EANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDME 128

Query: 236 AAFARFRAMQVEGVDPNRVTLIALLPACAKPGFVKHGKE 274
            A      M+  G++P   T +ALL A A+ G + H K+
Sbjct: 129 NAENILTVMRDAGIEPGPDTYLALLNAYAEKGDIDHVKQ 167



 Score = 33.9 bits (76), Expect = 1.3
 Identities = 23/75 (30%), Positives = 33/75 (43%), Gaps = 5/75 (6%)

Query: 474 EGQQVFKQVNADYEIPLTIEHYACLVDLLGRSGKVEDALEIMRTMPMKPSTRI-----WS 528
           E  Q   ++ A YE  +    YA L++L  R  KVEDAL +        S+ +     + 
Sbjct: 572 ENMQKALELKAKYESDMVTGGYAALINLCCRHDKVEDALNLKEEFDRLDSSAVLDTGNYL 631

Query: 529 SLVSACKLHGRLDIA 543
            LV     HG+L  A
Sbjct: 632 GLVRVLAKHGKLQDA 646



 Score = 31.2 bits (69), Expect = 8.2
 Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 9/98 (9%)

Query: 244 MQVEGVDPNRVTLIALLPACAKPGFVKHGKEIHGYAFRHGIESSHIFSSALINMYCQSGE 303
           M+   + PNRVT   L+ +    G ++   +I G+     +  +    SAL+  + ++G+
Sbjct: 67  MEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGD 126

Query: 304 SLHLAEQIFERSSFRDVVL------WSSIIGSYSQRGD 335
            +  AE I   +  RD  +      + +++ +Y+++GD
Sbjct: 127 -MENAENIL--TVMRDAGIEPGPDTYLALLNAYAEKGD 161


>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I
          Length = 1261

 Score = 37.0 bits (84), Expect = 0.15
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 440 ALKLFSEMKERGVKPDALTFLAVLSACNHAGLVTEGQQVFKQVNADYEIPLTIEHYACLV 499
           AL +F E K   VKP    + AVLS    A   TE  ++F+++     +P ++  Y  ++
Sbjct: 910 ALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVT-YGTVI 968

Query: 500 DLLGRSGKVEDALEIMRTMPMKPS 523
           +   R G    A ++   M  +P+
Sbjct: 969 NAACRIGDESLAEKLFAEMENQPN 992



 Score = 32.7 bits (73), Expect = 2.8
 Identities = 16/59 (27%), Positives = 33/59 (55%)

Query: 424 WSTMISAYGLHGHGEQALKLFSEMKERGVKPDALTFLAVLSACNHAGLVTEGQQVFKQV 482
           ++ ++S  G      +  KLF EMKE G+ P ++T+  V++A    G  +  +++F ++
Sbjct: 929 YNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEM 987



 Score = 32.3 bits (72), Expect = 3.7
 Identities = 37/191 (19%), Positives = 82/191 (42%), Gaps = 10/191 (5%)

Query: 323  WSSIIGSYSQRGDS---YKALTLFNKMLTEETEPNYVTLLAVISACTNLSSLKHGCGLHG 379
            ++ +I + ++RGD+     AL +F +      +P+     AV+S             L  
Sbjct: 891  FAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQ 950

Query: 380  FILKFGLSFSISLSNALMNMYAKCGCLEGSLQIFLEMQNRDSIS-----WSTMIS-AYGL 433
             + + GL  +      ++N   + G    + ++F EM+N+ +       ++TMI      
Sbjct: 951  EMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQFEVQT 1010

Query: 434  HGHGEQALKLFSEMKERGVKPDALTFLAVLSACNHAGLVTEGQ-QVFKQVNADYEIPLTI 492
              + E+AL  ++ +    ++P + T+  ++ A      V  G  +   ++    ++P+  
Sbjct: 1011 MFNREKALFYYNRLCATDIEPSSHTYKLLMDAYGTLKPVNVGSVKAVLELMERTDVPILS 1070

Query: 493  EHYACLVDLLG 503
             HYA  + +LG
Sbjct: 1071 MHYAAYIHILG 1081


>POLN_EEVVT (P27282) Nonstructural polyprotein [Contains:
            Nonstructural protein NSP1; Nonstructural protein NSP2;
            Nonstructural protein NSP3; Nonstructural protein NSP4]
          Length = 2492

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 24   SLISQGLYHQTLELFTQLHFSAPHSISSVLPSVIKACS-SLHSHTLGTLLHGLALTTGSH 82
            SL+S G  HQ L++   +H   P S+SS   S+  A    + S ++   L G ++T+G+ 
Sbjct: 1712 SLLSDGPTHQVLQVEADIH--GPPSVSSSSWSIPHASDFDVDSLSILDTLEGASVTSGAT 1769

Query: 83   SDPVVSNSLISLYAKFSDIQSARQVFDTMPHRDP 116
            S    S    S+      + + R VF   PH  P
Sbjct: 1770 SAETNSYFAKSMEFLARPVPAPRTVFRNPPHPAP 1803


>YFI2_YEAST (P43595) Hypothetical 22.4 kDa protein in GCN20-CMK1
           intergenic region precursor
          Length = 202

 Score = 33.1 bits (74), Expect = 2.2
 Identities = 21/88 (23%), Positives = 42/88 (46%), Gaps = 1/88 (1%)

Query: 45  APHSISSVLPSV-IKACSSLHSHTLGTLLHGLALTTGSHSDPVVSNSLISLYAKFSDIQS 103
           A H+I  +L S+ +  C +  S  L  ++  L  T G++   + SN+++ +    S I +
Sbjct: 87  ARHTIGGLLISIPVATCLTFISFALPLVIIFLFQTGGTNVSLITSNAILHILTLLSTIFA 146

Query: 104 ARQVFDTMPHRDPISWNSMINAYLQNGC 131
              +     HRDP++ +S+ +      C
Sbjct: 147 CTVILLLCMHRDPVTISSLYDLVWLANC 174


>POLN_EEVVP (P36328) Nonstructural polyprotein [Contains:
            Nonstructural protein NSP1; Nonstructural protein NSP2;
            Nonstructural protein NSP3; Nonstructural protein NSP4]
          Length = 2492

 Score = 32.3 bits (72), Expect = 3.7
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 24   SLISQGLYHQTLELFTQLHFSAPHSISSVLPSVIKACS-SLHSHTLGTLLHGLALTTGSH 82
            SL+S G  HQ L++   +H S   S+SS   S+  A    + S ++   L G ++T+G+ 
Sbjct: 1712 SLLSDGPTHQVLQVEADIHGSP--SVSSSSWSIPHASDFDVDSLSILDTLDGASVTSGAV 1769

Query: 83   SDPVVSNSLISLYAKFSDIQSARQVFDTMPHRDP 116
            S    S    S+  +   + + R VF   PH  P
Sbjct: 1770 SAETNSYFARSMEFRARPVPAPRTVFRNPPHPAP 1803


>PAB3_ARATH (O64380) Polyadenylate-binding protein 3
           (Poly(A)-binding protein 3) (PABP 3)
          Length = 660

 Score = 32.3 bits (72), Expect = 3.7
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 519 PMKPSTRIWSSLVSACKLHGRLDIAEMLGPQLIRSEPDNAANYT--LLNMIYAEHGHWLH 576
           P+ P +++ SSL SA        + E L P + R EP + A  T  LL M  AE  H + 
Sbjct: 568 PLLPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLME 627

Query: 577 -----KEQVMEAMKLQRL 589
                K +V EA+ + RL
Sbjct: 628 SPEALKSKVSEALDVLRL 645


>Y941_METJA (Q57711) Hypothetical protein MJ0941
          Length = 338

 Score = 31.6 bits (70), Expect = 6.3
 Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 414 LEMQNRDSISWSTMISAYGLHGHGEQALKLFSEMKERGVKPDALTFLAVLSAC-NHAGLV 472
           L  ++++ I+W  +   YG+ G+ ++ALK ++  K  G++   L+   + + C    G  
Sbjct: 90  LSYESKNPITWVFVGQLYGMSGNCDEALKCYN--KALGIENRFLSAFLLKTICLEFLGEY 147

Query: 473 TEGQQVFKQVNADYEIPLTIEHYACLVDLLGRSGKVEDALEIM-RTMPMKP 522
            E  + + +V      P  +  +    ++L + G+ EDAL  + R + +KP
Sbjct: 148 DELLKCYNEVLT--YTPNFVPMWVKKAEILRKLGRYEDALLCLNRALELKP 196


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,774,878
Number of Sequences: 164201
Number of extensions: 2683862
Number of successful extensions: 6306
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6284
Number of HSP's gapped (non-prelim): 24
length of query: 605
length of database: 59,974,054
effective HSP length: 116
effective length of query: 489
effective length of database: 40,926,738
effective search space: 20013174882
effective search space used: 20013174882
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)