BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0055.1
(241 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AG1Y_ARATH (Q9SZJ6) Agamous-like MADS box protein At4g37940 273 3e-73
AG17_ARATH (Q38840) Agamous-like MADS box protein AGL17 255 8e-68
AG_LYCES (Q40168) Floral homeotic protein AGAMOUS (TAG1) 170 2e-42
AG11_ARATH (Q38836) Agamous-like MADS box protein AGL11 167 3e-41
AG_ARATH (P17839) Floral homeotic protein AGAMOUS 166 5e-41
AGL1_ARATH (P29381) Agamous-like MADS box protein AGL1 (Protein ... 166 5e-41
AG_PANGI (Q40872) Floral homeotic protein AGAMOUS (GAG2) 166 6e-41
AG_BRANA (Q01540) Floral homeotic protein AGAMOUS 164 2e-40
AG_PETHY (Q40885) Floral homeotic protein AGAMOUS (pMADS3) 162 7e-40
AGL5_ARATH (P29385) Agamous-like MADS box protein AGL5 162 7e-40
AG_TOBAC (Q43585) Floral homeotic protein AGAMOUS (NAG1) 162 9e-40
AGL8_SOLTU (Q42429) Agamous-like MADS box protein AGL8 homolog (... 160 3e-39
CAL_ARATH (Q39081) Transcription factor CAULIFLOWER (Agamous-lik... 159 7e-39
SOC1_ARATH (O64645) SUPPRESSOR OF CONSTANS OVEREXPRESSION 1 prot... 158 1e-38
AP1_SINAL (Q41276) Floral homeotic protein APETALA1 (MADS C) 158 1e-38
AGL8_ARATH (Q38876) Agamous-like MADS box protein AGL8 (Floral h... 158 1e-38
AGL8_LYCES (Q40170) Agamous-like MADS box protein AGL8 homolog (... 157 2e-38
AGL6_ARATH (P29386) Agamous-like MADS box protein AGL6 157 2e-38
AGL8_SOLCO (O22328) Agamous-like MADS box protein AGL8 homolog 157 3e-38
AP1_ARATH (P35631) Floral homeotic protein APETALA1 (Agamous-lik... 156 4e-38
>AG1Y_ARATH (Q9SZJ6) Agamous-like MADS box protein At4g37940
Length = 228
Score = 273 bits (698), Expect = 3e-73
Identities = 142/230 (61%), Positives = 178/230 (76%), Gaps = 4/230 (1%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
MGRGKI I+RID+STSRQVTFSKRR GL+KKAKEL+ILCDAEVGLI+FSSTGKLY++AS+
Sbjct: 1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60
Query: 61 SMKSVIERYNKLKEEHNQLMNPASELKFWQTEAASLRQQLQYLQECHRQLMGEGLSGLGV 120
SMKSVI+RYNK K E QL+NPASE+KFWQ EAA LRQ+L LQE HRQ+MGE L+GL V
Sbjct: 61 SMKSVIDRYNKSKIEQQQLLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSV 120
Query: 121 KELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQKENAEL 180
EL +LENQ+E+SL+G+RM+K+Q+LT EI+EL QK NLIHQEN +L +K++ I +EN EL
Sbjct: 121 NELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQRIHQENVEL 180
Query: 181 QKKVYEARSTNEKDAASSPSCTIRNGYDLQAISLQLSQPQPQFSEPPAKA 230
KK Y A + + + + + I LQLSQP+ + P +A
Sbjct: 181 YKKAYMANT----NGFTHREVAVADDESHTQIRLQLSQPEHSDYDTPPRA 226
>AG17_ARATH (Q38840) Agamous-like MADS box protein AGL17
Length = 227
Score = 255 bits (651), Expect = 8e-68
Identities = 135/221 (61%), Positives = 170/221 (76%), Gaps = 5/221 (2%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
MGRGKI I++ID+STSRQVTFSKRR GL+KKAKEL+ILCDAEV LI+FS+T KLY++AS+
Sbjct: 1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60
Query: 61 SMKSVIERYNKLKEEHNQLMNPASELKFWQTEAASLRQQLQYLQECHRQLMGEGLSGLGV 120
S+KS IER+N K E +LMNPASE+KFWQ EA +LRQ+L LQE +RQL G L+GL V
Sbjct: 61 SVKSTIERFNTAKMEEQELMNPASEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSV 120
Query: 121 KELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQKENAEL 180
KELQN+E+QLEMSL+G+RMK++QILT+EIKEL +K NL+H EN EL +K++ I +EN EL
Sbjct: 121 KELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHHENLELSRKVQRIHQENVEL 180
Query: 181 QKKVYEARSTNEKDAASSPSCTIRNGYDLQA-ISLQLSQPQ 220
KK Y +TN Y+ A + LQLSQP+
Sbjct: 181 YKKAYGTSNTNGLGHHELVDAV----YESHAQVRLQLSQPE 217
>AG_LYCES (Q40168) Floral homeotic protein AGAMOUS (TAG1)
Length = 248
Score = 170 bits (431), Expect = 2e-42
Identities = 96/233 (41%), Positives = 144/233 (61%), Gaps = 3/233 (1%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
+GRGKI I+RI+N+T+RQVTF KRRNGLLKKA ELS+LCDAEV L+VFS+ G+LYEYA+
Sbjct: 17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANN 76
Query: 61 SMKSVIERYNK-LKEEHNQLMNPASELKFWQTEAASLRQQLQYLQECHRQLMGEGLSGLG 119
S+K+ IERY K + N + +++Q EA+ LR Q+ L +R +MGE L+G+
Sbjct: 77 SVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMK 136
Query: 120 VKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKM-ELIQKENA 178
+KEL+NLE ++E + +R KK+++L EI+ + ++ +H N L K+ E + ++
Sbjct: 137 LKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQ 196
Query: 179 ELQKKVYEARSTNEKDAASSPSCTIRNGYDLQAISLQLSQPQPQFSEPPAKAV 231
Q + S+N + P Y LQ LQ + P+ +PP + V
Sbjct: 197 HQQMNLMPGSSSNYHELVPPPQQFDTRNY-LQVNGLQTNNHYPRQDQPPIQLV 248
>AG11_ARATH (Q38836) Agamous-like MADS box protein AGL11
Length = 230
Score = 167 bits (422), Expect = 3e-41
Identities = 88/176 (50%), Positives = 122/176 (69%), Gaps = 1/176 (0%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
MGRGKI I+RI+NST+RQVTF KRRNGLLKKA ELS+LCDAEV LIVFS+ G+LYEYA+
Sbjct: 1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60
Query: 61 SMKSVIERYNK-LKEEHNQLMNPASELKFWQTEAASLRQQLQYLQECHRQLMGEGLSGLG 119
+++S IERY K + N ++Q E+A LRQQ+Q +Q +R LMG+ LS L
Sbjct: 61 NIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLS 120
Query: 120 VKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQK 175
VKEL+ +EN+LE ++ +R KK ++L EI+ ++ + EN L K+ +++
Sbjct: 121 VKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVER 176
>AG_ARATH (P17839) Floral homeotic protein AGAMOUS
Length = 252
Score = 166 bits (420), Expect = 5e-41
Identities = 87/180 (48%), Positives = 125/180 (69%), Gaps = 1/180 (0%)
Query: 2 GRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYASTS 61
GRGKI I+RI+N+T+RQVTF KRRNGLLKKA ELS+LCDAEV LIVFSS G+LYEY++ S
Sbjct: 18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS 77
Query: 62 MKSVIERYNKLKEEHNQLMNPAS-ELKFWQTEAASLRQQLQYLQECHRQLMGEGLSGLGV 120
+K IERY K +++ + A +++Q E+A LRQQ+ +Q +RQLMGE + +
Sbjct: 78 VKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSP 137
Query: 121 KELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQKENAEL 180
KEL+NLE +LE S+ +R KK+++L EI + ++ +H +N L K+ ++ N +
Sbjct: 138 KELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENERNNPSI 197
>AGL1_ARATH (P29381) Agamous-like MADS box protein AGL1 (Protein
Shatterproof 1)
Length = 248
Score = 166 bits (420), Expect = 5e-41
Identities = 97/238 (40%), Positives = 147/238 (61%), Gaps = 12/238 (5%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
+GRGKI I+RI+N+T+RQVTF KRRNGLLKKA ELS+LCDAEV L++FS+ G+LYEYA+
Sbjct: 16 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANN 75
Query: 61 SMKSVIERYNKLKEEHNQLMNPAS----ELKFWQTEAASLRQQLQYLQECHRQLMGEGLS 116
S++ IERY K+ + +NP S +++Q EA+ LR+Q++ +Q +R ++GE L
Sbjct: 76 SVRGTIERY---KKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLG 132
Query: 117 GLGVKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQKE 176
L KEL+NLE +LE + VR KK+++L EI+ + ++ + N L K+ +
Sbjct: 133 SLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARL 192
Query: 177 NAELQKKVYEARSTNEKDAASSPSCTIRNGYDLQAISLQLSQPQPQFS---EPPAKAV 231
N + Q+ +T + SS + Y+ I + L +P QFS +PP + V
Sbjct: 193 NPDQQESSVIQGTTVYESGVSSHDQS--QHYNRNYIPVNLLEPNQQFSGQDQPPLQLV 248
>AG_PANGI (Q40872) Floral homeotic protein AGAMOUS (GAG2)
Length = 242
Score = 166 bits (419), Expect = 6e-41
Identities = 97/234 (41%), Positives = 142/234 (60%), Gaps = 10/234 (4%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
+GRGKI I+RI+N+T+RQVTF KRRNGLLKKA ELS+LCDAEV LIVFS+ G+LYEYA+
Sbjct: 17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 76
Query: 61 SMKSVIERYNK-LKEEHNQLMNPASELKFWQTEAASLRQQLQYLQECHRQLMGEGLSGLG 119
S+K IERY K + N + +F+Q EA+ LRQ++ +Q+ +R +MGE L L
Sbjct: 77 SVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLT 136
Query: 120 VKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQKENAE 179
V++L+ LE +LE + +R KK+++L EI+ + +K +H N L K+ EN
Sbjct: 137 VRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKI----AENER 192
Query: 180 LQKKVYEARSTNEKDAASSPSCTIRNGYDLQAISLQLSQPQPQFSEPPAKAVKL 233
Q+ + +++ + A S RN L + QP +S A++L
Sbjct: 193 AQQHMNLMPGSSDYELAPPQSFDGRNYIQLNGL-----QPNNHYSRQDQTALQL 241
>AG_BRANA (Q01540) Floral homeotic protein AGAMOUS
Length = 252
Score = 164 bits (415), Expect = 2e-40
Identities = 86/180 (47%), Positives = 125/180 (68%), Gaps = 1/180 (0%)
Query: 2 GRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYASTS 61
GRGKI I+RI+N+T+RQVTF KRRNGLLKKA ELS+LCDAEV LIVFSS G+LYEY++ S
Sbjct: 18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS 77
Query: 62 MKSVIERYNKLKEEHNQLMNPAS-ELKFWQTEAASLRQQLQYLQECHRQLMGEGLSGLGV 120
+K IERY K +++ + A +++Q E+A LRQQ+ +Q +RQLMGE + +
Sbjct: 78 VKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSP 137
Query: 121 KELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQKENAEL 180
KEL+NLE +L+ S+ +R KK+++L EI + ++ +H +N L K+ ++ N +
Sbjct: 138 KELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAKIAENERNNPSM 197
>AG_PETHY (Q40885) Floral homeotic protein AGAMOUS (pMADS3)
Length = 242
Score = 162 bits (410), Expect = 7e-40
Identities = 96/232 (41%), Positives = 142/232 (60%), Gaps = 7/232 (3%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
+GRGKI I+RI+N+T+RQVTF KRRNGLLKKA ELS+LCDAEV LIVFSS G+LYEYA+
Sbjct: 17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 76
Query: 61 SMKSVIERYNKLKEEHNQLMNPA-SELKFWQTEAASLRQQLQYLQECHRQLMGEGLSGLG 119
S+K+ IERY K + + + A + +++Q EA+ LR Q+ LQ +R +GE L+ L
Sbjct: 77 SVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALN 136
Query: 120 VKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQKENAE 179
+++L+NLE ++E + +R KK+++L EI+ + ++ +H N L K+ E
Sbjct: 137 LRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKI----AETER 192
Query: 180 LQKKVYEARSTNEKDAASSPSCTIRNGYDLQAISLQLSQPQPQFSEPPAKAV 231
Q+ S++ S RN LQ LQ + P+ +PP + V
Sbjct: 193 SQQMNLMPGSSSYDLVPPQQSFDARN--YLQVNGLQTNNHYPRQDQPPLQLV 242
>AGL5_ARATH (P29385) Agamous-like MADS box protein AGL5
Length = 246
Score = 162 bits (410), Expect = 7e-40
Identities = 96/240 (40%), Positives = 148/240 (61%), Gaps = 18/240 (7%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
+GRGKI I+RI+N+T+RQVTF KRRNGLLKKA ELS+LCDAEV L++FS+ G+LYEYA+
Sbjct: 16 IGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANN 75
Query: 61 SMKSVIERYNK-LKEEHNQLMNPASELKFWQTEAASLRQQLQYLQECHRQLMGEGLSGLG 119
S++ IERY K + N + +++Q EA+ LR+Q++ +Q +R ++GE L L
Sbjct: 76 SVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLN 135
Query: 120 VKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKME----LIQK 175
KEL+NLE++LE + VR KK ++L EI+ + ++ + +N L K+ L Q+
Sbjct: 136 FKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITERTGLQQQ 195
Query: 176 ENAEL-QKKVYEARSTNEKDAASSPSCTIRNGYDLQAISLQLSQPQPQFS---EPPAKAV 231
E++ + Q VYE+ T+ + Y+ I++ L +P S +PP + V
Sbjct: 196 ESSVIHQGTVYESGVTSSHQSGQ---------YNRNYIAVNLLEPNQNSSNQDQPPLQLV 246
>AG_TOBAC (Q43585) Floral homeotic protein AGAMOUS (NAG1)
Length = 248
Score = 162 bits (409), Expect = 9e-40
Identities = 84/184 (45%), Positives = 128/184 (68%), Gaps = 3/184 (1%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
+GRGKI I+RI+N+T+RQVTF KRRNGLLKKA ELS+LCDAEV LIVFSS G+LYEYA+
Sbjct: 17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 76
Query: 61 SMKSVIERYNK-LKEEHNQLMNPASELKFWQTEAASLRQQLQYLQECHRQLMGEGLSGLG 119
S+K+ IERY K + N + +++Q EA+ LR Q+ LQ +R ++GE L+ L
Sbjct: 77 SVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALS 136
Query: 120 VKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQKENAE 179
+++L+NLE ++E + +R KK+++L EI+ + ++ +H N Y + ++ + E A+
Sbjct: 137 LRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQ--YLRAKIAETERAQ 194
Query: 180 LQKK 183
Q++
Sbjct: 195 QQQQ 198
>AGL8_SOLTU (Q42429) Agamous-like MADS box protein AGL8 homolog
(POTM1-1)
Length = 250
Score = 160 bits (404), Expect = 3e-39
Identities = 85/185 (45%), Positives = 128/185 (68%), Gaps = 10/185 (5%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
MGRG++ ++RI+N +RQVTFSKRR+GLLKKA E+S+LCDAEVGLIVFS+ GKL+EYA+
Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYAND 60
Query: 61 S-MKSVIERYNKLKEEHNQLM-----NPASELKFWQTEAASLRQQLQYLQECHRQLMGEG 114
S M+ ++ERY + QL+ +P S W E A L+ +L+ LQ + +GE
Sbjct: 61 SCMERLLERYERYSFAERQLVPTDHTSPGS----WTLEHAKLKARLEVLQRNQKHYVGED 116
Query: 115 LSGLGVKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQ 174
L L +KELQNLE+QL+ +LK +R +K+Q++ + I L ++ + ++N +L KK++ +
Sbjct: 117 LESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKERE 176
Query: 175 KENAE 179
KE A+
Sbjct: 177 KEVAQ 181
>CAL_ARATH (Q39081) Transcription factor CAULIFLOWER (Agamous-like
MADS box protein AGL10)
Length = 253
Score = 159 bits (401), Expect = 7e-39
Identities = 82/179 (45%), Positives = 124/179 (68%), Gaps = 4/179 (2%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
MGRG++ ++RI+N +RQVTFSKRR GLLKKA+E+S+LCDAEV LIVFS GKL+EY+S
Sbjct: 1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSE 60
Query: 61 S-MKSVIERYNKLKEEHNQLMNPASELKF-WQTEAASLRQQLQYLQECHRQLMGEGLSGL 118
S M+ V+ERY + QL+ P S + W E + L+ +++ L+ R +GE L +
Sbjct: 61 SCMEKVLERYERYSYAERQLIAPDSHVNTNWSMEYSRLKAKIELLERNQRHYLGEELEPM 120
Query: 119 GVKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQKEN 177
+K+LQNLE QLE +LK +R +K+Q++ + + L +K I +EN+ L K+++ ++EN
Sbjct: 121 SLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIK--EREN 177
>SOC1_ARATH (O64645) SUPPRESSOR OF CONSTANS OVEREXPRESSION 1 protein
(Agamous-like MADS box protein AGL20)
Length = 214
Score = 158 bits (399), Expect = 1e-38
Identities = 89/205 (43%), Positives = 134/205 (64%), Gaps = 7/205 (3%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
M RGK ++RI+N+TSRQVTFSKRRNGLLKKA ELS+LCDAEV LI+FS GKLYE+AS+
Sbjct: 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60
Query: 61 SMKSVIERYNKLKEEHNQLMNPASE--LKFWQTEAASLRQQLQYLQECHRQLMGEGLSGL 118
+M+ I+RY + ++ P SE ++ + EAA++ ++++ L+ R+L+GEG+
Sbjct: 61 NMQDTIDRYLRHTKDRVS-TKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTC 119
Query: 119 GVKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQKENA 178
++ELQ +E QLE S+K +R +K Q+ ++I++L QK + EN +L +K + E
Sbjct: 120 SIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVW 179
Query: 179 ELQKKVYEARSTNEKDAASSPSCTI 203
+ + ST D SSPS +
Sbjct: 180 SNKNQ----ESTGRGDEESSPSSEV 200
>AP1_SINAL (Q41276) Floral homeotic protein APETALA1 (MADS C)
Length = 254
Score = 158 bits (399), Expect = 1e-38
Identities = 80/177 (45%), Positives = 121/177 (68%), Gaps = 2/177 (1%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
MGRG++ ++RI+N +RQVTFSKRR GLLKKA E+S+LCDAEV L+VFS GKL+EY++
Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60
Query: 61 S-MKSVIERYNKLKEEHNQLMNPASELKF-WQTEAASLRQQLQYLQECHRQLMGEGLSGL 118
S M+ ++ERY + QL+ P S++ W E L+ +++ L+ R +GE L +
Sbjct: 61 SCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAM 120
Query: 119 GVKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQK 175
KELQNLE QL+ +LK +R +K+Q++ D I EL +K I ++N+ L K+++ +K
Sbjct: 121 SSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREK 177
>AGL8_ARATH (Q38876) Agamous-like MADS box protein AGL8 (Floral
homeotic protein AGL8) (Transcription factor FRUITFULL)
Length = 242
Score = 158 bits (399), Expect = 1e-38
Identities = 80/193 (41%), Positives = 131/193 (67%), Gaps = 2/193 (1%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
MGRG++ ++RI+N +RQVTFSKRR+GLLKKA E+S+LCDAEV LIVFSS GKL+EY++
Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTD 60
Query: 61 S-MKSVIERYNKLKEEHNQLM-NPASELKFWQTEAASLRQQLQYLQECHRQLMGEGLSGL 118
S M+ ++ERY++ QL+ S+ + W E A L+ +++ L++ R MGE L L
Sbjct: 61 SCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSL 120
Query: 119 GVKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQKENA 178
+KELQ+LE+QL+ ++K +R +K+Q + + I L +K + N L KK++ +K+
Sbjct: 121 SLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKEREKKTG 180
Query: 179 ELQKKVYEARSTN 191
+ + ++ + +++
Sbjct: 181 QQEGQLVQCSNSS 193
>AGL8_LYCES (Q40170) Agamous-like MADS box protein AGL8 homolog
(TM4)
Length = 227
Score = 157 bits (398), Expect = 2e-38
Identities = 83/186 (44%), Positives = 126/186 (67%), Gaps = 10/186 (5%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
MGRG++ ++RI+N +RQVTFSKRR+GLLKKA E+S+LCDAEVGLIVFS+ GKL+EYA+
Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYAND 60
Query: 61 S-MKSVIERYNKLKEEHNQLM-----NPASELKFWQTEAASLRQQLQYLQECHRQLMGEG 114
S M+ ++ERY + QL+ +P S W E L+ +L+ LQ + +GE
Sbjct: 61 SCMERILERYERYSFAEKQLVPTDHTSPVS----WTLEHRKLKARLEVLQRNQKHYVGED 116
Query: 115 LSGLGVKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQ 174
L L +KELQNLE+QL+ +LK +R +K+Q++ + I L +K + ++N +L KK++ +
Sbjct: 117 LESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKKVKERE 176
Query: 175 KENAEL 180
K ++
Sbjct: 177 KSAQQI 182
>AGL6_ARATH (P29386) Agamous-like MADS box protein AGL6
Length = 252
Score = 157 bits (398), Expect = 2e-38
Identities = 81/171 (47%), Positives = 111/171 (64%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
MGRG++ ++RI+N +RQVTFSKRRNGLLKKA ELS+LCDAEV LI+FSS GKLYE+ S
Sbjct: 1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSV 60
Query: 61 SMKSVIERYNKLKEEHNQLMNPASELKFWQTEAASLRQQLQYLQECHRQLMGEGLSGLGV 120
++S IERYN+ P + W E L+ + + L +R L+GE L +GV
Sbjct: 61 GIESTIERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGV 120
Query: 121 KELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKME 171
KELQ LE QLE +L R +K Q++ +E+++L +K + N +L K E
Sbjct: 121 KELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFE 171
>AGL8_SOLCO (O22328) Agamous-like MADS box protein AGL8 homolog
Length = 250
Score = 157 bits (396), Expect = 3e-38
Identities = 84/182 (46%), Positives = 125/182 (68%), Gaps = 10/182 (5%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
MGRG++ ++RI+N +RQVTFSKRR+GLLKKA E+S+LCDAEVGLIVFS+ GKL+EYA+
Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATD 60
Query: 61 S-MKSVIERYNKLKEEHNQLM-----NPASELKFWQTEAASLRQQLQYLQECHRQLMGEG 114
S M+ ++ERY + QL+ +P S W E A L+ +L+ LQ + +GE
Sbjct: 61 SCMERLLERYERYSFAEKQLVPTDHTSPGS----WTLENAKLKARLEVLQRNEKLYVGED 116
Query: 115 LSGLGVKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQ 174
L L +KELQNLE+QL +LK +R +K+Q++ + I L ++ + ++N +L KK++ +
Sbjct: 117 LESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKERE 176
Query: 175 KE 176
KE
Sbjct: 177 KE 178
>AP1_ARATH (P35631) Floral homeotic protein APETALA1 (Agamous-like
MADS box protein AGL7)
Length = 256
Score = 156 bits (395), Expect = 4e-38
Identities = 79/177 (44%), Positives = 121/177 (67%), Gaps = 2/177 (1%)
Query: 1 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYEYAST 60
MGRG++ ++RI+N +RQVTFSKRR GLLKKA E+S+LCDAEV L+VFS GKL+EY++
Sbjct: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60
Query: 61 S-MKSVIERYNKLKEEHNQLMNPASELKF-WQTEAASLRQQLQYLQECHRQLMGEGLSGL 118
S M+ ++ERY + QL+ P S++ W E L+ +++ L+ R +GE L +
Sbjct: 61 SCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAM 120
Query: 119 GVKELQNLENQLEMSLKGVRMKKDQILTDEIKELHQKGNLIHQENAELYKKMELIQK 175
KELQNLE QL+ +LK +R +K+Q++ + I EL +K I ++N+ L K+++ +K
Sbjct: 121 SPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREK 177
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.312 0.129 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,452,235
Number of Sequences: 164201
Number of extensions: 998562
Number of successful extensions: 4790
Number of sequences better than 10.0: 424
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 307
Number of HSP's that attempted gapping in prelim test: 4214
Number of HSP's gapped (non-prelim): 815
length of query: 241
length of database: 59,974,054
effective HSP length: 107
effective length of query: 134
effective length of database: 42,404,547
effective search space: 5682209298
effective search space used: 5682209298
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0055.1