BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0052b.11
(434 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TUB_HUMAN (P50607) Tubby protein homolog 161 3e-39
TUB_RAT (O88808) Tubby protein homolog 160 8e-39
TUB_MOUSE (P50586) Tubby protein 160 8e-39
TUL3_HUMAN (O75386) Tubby related protein 3 (Tubby-like protein 3) 157 5e-38
TUL1_MOUSE (Q9Z273) Tubby related protein 1 (Tubby-like protein 1) 157 7e-38
TUL1_HUMAN (O00294) Tubby related protein 1 (Tubby-like protein 1) 157 7e-38
TUL3_MOUSE (O88413) Tubby related protein 3 (Tubby-like protein 3) 153 9e-37
TUL2_MOUSE (P46686) Tubby related protein 2 (Tubby-like protein ... 149 1e-35
TUB1_CAEEL (Q09306) Tubby protein homolog 1 144 3e-34
TUL2_HUMAN (O00295) Tubby related protein 2 (Tubby-like protein 2) 125 2e-28
TUL4_MOUSE (Q9JIL5) Tubby-like protein 4 (Tubby superfamily prot... 58 5e-08
TUL4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily prot... 57 7e-08
UPS2_CORGL (Q8NNC1) Undecaprenyl pyrophosphate synthetase 2 (EC ... 35 0.49
CD5S_MOUSE (O35926) Cyclin-dependent kinase 5 activator 2 precur... 33 1.1
VASP_CANFA (P50551) Vasodilator-stimulated phosphoprotein (VASP) 33 1.4
UPS2_COREF (Q8FNG2) Undecaprenyl pyrophosphate synthetase 2 (EC ... 33 1.4
ANXB_MOUSE (P97384) Annexin A11 (Annexin XI) (Calcyclin-associat... 33 1.9
B3A3_RAT (P23348) Anion exchange protein 3 (Neuronal band 3-like... 32 2.4
B3A3_MOUSE (P16283) Anion exchange protein 3 (Neuronal band 3-li... 32 2.4
E2F1_HUMAN (Q01094) Transcription factor E2F1 (E2F-1) (Retinobla... 32 3.2
>TUB_HUMAN (P50607) Tubby protein homolog
Length = 506
Score = 161 bits (408), Expect = 3e-39
Identities = 112/315 (35%), Positives = 162/315 (50%), Gaps = 77/315 (24%)
Query: 124 IQCFIKRDKSKLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTCTEYIISMDADNISRS 181
I+C I RDK + ++ L E+GK FLL+ ++ +++ + Y+IS+D ++SR
Sbjct: 265 IKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRG 324
Query: 182 SSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYN--IAQ 239
+YIGKLRSN +GTKF +YD ++P K S + SG+ +A
Sbjct: 325 GDSYIGKLRSNLMGTKFTVYDNG-------VNP--------QKASSSTLESGTLRQELAA 369
Query: 240 VTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFARSIDN 299
V YE NVLG +GPR+M+ +P ++ V + + PR N
Sbjct: 370 VCYETNVLGFKGPRKMSVI---VPGMNM-----VHERVSIRPR----------------N 405
Query: 300 STEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKN 359
E AR+ + + E + L+NK+P W++ Q + LNF GRVT ASVKN
Sbjct: 406 EHETLLARW-----------QNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKN 454
Query: 360 FQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQA 419
FQ+I +DPD I++QFG+V +D+FTMDY YPL A QA
Sbjct: 455 FQIIHG-----------------------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQA 491
Query: 420 FAICLTSFDTKLACE 434
FAI L+SFD+KLACE
Sbjct: 492 FAIALSSFDSKLACE 506
>TUB_RAT (O88808) Tubby protein homolog
Length = 505
Score = 160 bits (404), Expect = 8e-39
Identities = 112/315 (35%), Positives = 162/315 (50%), Gaps = 77/315 (24%)
Query: 124 IQCFIKRDKSKLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTCTEYIISMDADNISRS 181
I+C I RDK + ++ L E+GK FLL+ ++ +++ + Y+IS+D ++SR
Sbjct: 264 IKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRG 323
Query: 182 SSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYN--IAQ 239
+YIGKLRSN +GTKF +YD ++P K S + SG+ +A
Sbjct: 324 GDSYIGKLRSNLMGTKFTVYDNG-------VNP--------QKASSSTLESGTLRQELAA 368
Query: 240 VTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFARSIDN 299
V YE NVLG +GPR+M+ +P ++ V + + PR N
Sbjct: 369 VCYETNVLGFKGPRKMSVI---VPGMNM-----VHERVCIRPR----------------N 404
Query: 300 STEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKN 359
E AR+ + + E + L+NK+P W++ Q + LNF GRVT ASVKN
Sbjct: 405 EHETLLARW-----------QNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKN 453
Query: 360 FQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQA 419
FQ+I +DPD I++QFG+V +D+FTMDY YPL A QA
Sbjct: 454 FQIIHG-----------------------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQA 490
Query: 420 FAICLTSFDTKLACE 434
FAI L+SFD+KLACE
Sbjct: 491 FAIALSSFDSKLACE 505
>TUB_MOUSE (P50586) Tubby protein
Length = 505
Score = 160 bits (404), Expect = 8e-39
Identities = 112/315 (35%), Positives = 162/315 (50%), Gaps = 77/315 (24%)
Query: 124 IQCFIKRDKSKLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTCTEYIISMDADNISRS 181
I+C I RDK + ++ L E+GK FLL+ ++ +++ + Y+IS+D ++SR
Sbjct: 264 IKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRG 323
Query: 182 SSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYN--IAQ 239
+YIGKLRSN +GTKF +YD ++P K S + SG+ +A
Sbjct: 324 GDSYIGKLRSNLMGTKFTVYDNG-------VNP--------QKASSSTLESGTLRQELAA 368
Query: 240 VTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFARSIDN 299
V YE NVLG +GPR+M+ +P ++ V + + PR N
Sbjct: 369 VCYETNVLGFKGPRKMSVI---VPGMNM-----VHERVCIRPR----------------N 404
Query: 300 STEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKN 359
E AR+ + + E + L+NK+P W++ Q + LNF GRVT ASVKN
Sbjct: 405 EHETLLARW-----------QNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKN 453
Query: 360 FQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQA 419
FQ+I +DPD I++QFG+V +D+FTMDY YPL A QA
Sbjct: 454 FQIIHG-----------------------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQA 490
Query: 420 FAICLTSFDTKLACE 434
FAI L+SFD+KLACE
Sbjct: 491 FAIALSSFDSKLACE 505
>TUL3_HUMAN (O75386) Tubby related protein 3 (Tubby-like protein 3)
Length = 442
Score = 157 bits (397), Expect = 5e-38
Identities = 111/314 (35%), Positives = 157/314 (49%), Gaps = 76/314 (24%)
Query: 124 IQCFIKRDKSKLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTCTEYIISMDADNISRS 181
++C I RDK + LF L L E + FLL+A++ +++ Y+IS+D ++SR
Sbjct: 202 VRCRIIRDKRGMDRGLFSHLLYVLGKEENQKIFLLAARKRKKSKTANYLISIDPVDLSRE 261
Query: 182 SSTYIGKLRSNFLGTKFIIYDTQP-PYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQV 240
+Y+GKLRSN +GTKF +YD P L +R+ +A +
Sbjct: 262 GESYVGKLRSNLMGTKFTVYDRGICPMKGRGLVGAAHTRQ---------------ELAAI 306
Query: 241 TYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFARSIDNS 300
+YE NVLG +GPR+M+ IP +L+ +P +P+ DS S R+++N
Sbjct: 307 SYETNVLGFKGPRKMSVI---IPGMTLN-HKQIPYQPQ----NNHDSLLSRWQNRTMENL 358
Query: 301 TEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNF 360
E L NK+P W+ Q + LNFRGRVT ASVKNF
Sbjct: 359 VE---------------------------LHNKAPVWNSDTQSYVLNFRGRVTQASVKNF 391
Query: 361 QLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAF 420
QL+ +DPD I++QFG+V D+FT+DY YPL A QAF
Sbjct: 392 QLVHK-----------------------NDPDYIVMQFGRVADDVFTLDYNYPLCAVQAF 428
Query: 421 AICLTSFDTKLACE 434
AI L+SFD+KLACE
Sbjct: 429 AISLSSFDSKLACE 442
>TUL1_MOUSE (Q9Z273) Tubby related protein 1 (Tubby-like protein 1)
Length = 543
Score = 157 bits (396), Expect = 7e-38
Identities = 112/319 (35%), Positives = 150/319 (46%), Gaps = 73/319 (22%)
Query: 116 QPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDA 175
QP + ++C + RDK + ++ L E FLL+ ++ +R+ Y+IS D
Sbjct: 298 QPAPQGRAVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISSDP 357
Query: 176 DNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSY 235
N+SR +IGKLRSN LG +F ++D N Q G V S
Sbjct: 358 TNLSRGGENFIGKLRSNLLGNRFTVFDNG---QNPQRGGGG------------DVGSLRQ 402
Query: 236 NIAQVTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFAR 295
+A V YE NVLG RGPRRM IP + D VP +P
Sbjct: 403 ELAAVVYETNVLGFRGPRRMTVI---IPGMNSD-NERVPIRPR----------------- 441
Query: 296 SIDNSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVA 355
N+++ R+ + + E + L NK P W+E + LNF+GRVT A
Sbjct: 442 ---NASDGLLVRW-----------QNKTLESLIELHNKPPIWNEDSGSYTLNFQGRVTQA 487
Query: 356 SVKNFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLS 415
SVKNFQ++ A DPD I+LQFG+V +D FT+DYRYPL
Sbjct: 488 SVKNFQIVHA-----------------------DDPDYIVLQFGRVAEDAFTLDYRYPLC 524
Query: 416 AFQAFAICLTSFDTKLACE 434
A QAFAI L+SFD KLACE
Sbjct: 525 ALQAFAIALSSFDGKLACE 543
>TUL1_HUMAN (O00294) Tubby related protein 1 (Tubby-like protein 1)
Length = 542
Score = 157 bits (396), Expect = 7e-38
Identities = 109/319 (34%), Positives = 152/319 (47%), Gaps = 73/319 (22%)
Query: 116 QPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDA 175
+P + ++C + RDK + ++ L E FLL+ ++ +R+ Y+IS+D
Sbjct: 297 RPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISIDP 356
Query: 176 DNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSY 235
N+SR +IGKLRSN LG +F ++D N Q G S V S
Sbjct: 357 TNLSRGGENFIGKLRSNLLGNRFTVFD------NGQNPQRG---------YSTNVASLRQ 401
Query: 236 NIAQVTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFAR 295
+A V YE NVLG RGPRRM + + A + VP +P
Sbjct: 402 ELAAVIYETNVLGFRGPRRMTVIIPGMSAEN----ERVPIRPR----------------- 440
Query: 296 SIDNSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVA 355
N+++ R+ + + E + L NK P W++ + LNF+GRVT A
Sbjct: 441 ---NASDGLLVRW-----------QNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA 486
Query: 356 SVKNFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLS 415
SVKNFQ++ A DPD I+LQFG+V +D FT+DYRYPL
Sbjct: 487 SVKNFQIVHA-----------------------DDPDYIVLQFGRVAEDAFTLDYRYPLC 523
Query: 416 AFQAFAICLTSFDTKLACE 434
A QAFAI L+SFD KLACE
Sbjct: 524 ALQAFAIALSSFDGKLACE 542
>TUL3_MOUSE (O88413) Tubby related protein 3 (Tubby-like protein 3)
Length = 460
Score = 153 bits (386), Expect = 9e-37
Identities = 105/320 (32%), Positives = 160/320 (49%), Gaps = 74/320 (23%)
Query: 117 PGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGK--FLLSAKRTRRTTCTEYIISMD 174
P R ++C + RDK + LF L E + FLL+ ++ +++ + Y++S D
Sbjct: 213 PAPRGVTVKCKVTRDKKGMDRGLFPTYYMHLEREENRKIFLLAGRKRKKSKTSNYLVSTD 272
Query: 175 ADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGS 234
++SR +YIGKLRSN +GTKF +YD AQ G + ++++
Sbjct: 273 PTDLSREGESYIGKLRSNLMGTKFTVYDHGVNPVKAQ----GLVEKAHTRQ--------- 319
Query: 235 YNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFA 294
+A + YE NVLG +GPR+M+ IP +++ +P +P +L +++
Sbjct: 320 -ELAAICYETNVLGFKGPRKMSVI---IPGMNMN-HERIPFRPRNEHESLLSKWQN---- 370
Query: 295 RSIDNSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTV 354
+S++N E L NK+P W++ Q + LNF GRVT
Sbjct: 371 KSMENLIE---------------------------LHNKAPVWNDDTQSYVLNFHGRVTQ 403
Query: 355 ASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPL 414
ASVKNFQ++ +DPD I++QFG+V D+FT+DY YPL
Sbjct: 404 ASVKNFQIVHG-----------------------NDPDYIVMQFGRVADDVFTLDYNYPL 440
Query: 415 SAFQAFAICLTSFDTKLACE 434
A QAFAI L+SFD+KLACE
Sbjct: 441 CALQAFAIGLSSFDSKLACE 460
>TUL2_MOUSE (P46686) Tubby related protein 2 (Tubby-like protein 2)
(P4-6 protein) (Fragment)
Length = 564
Score = 149 bits (377), Expect = 1e-35
Identities = 106/320 (33%), Positives = 153/320 (47%), Gaps = 74/320 (23%)
Query: 117 PGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENG--KFLLSAKRTRRTTCTEYIISMD 174
P RD +Q I R+K + +F L E+G FLL+ ++ +R+ + Y+IS+D
Sbjct: 317 PAPRDHMVQWRIVRNKHGMDKGMFPSYYLYLEGEDGVAHFLLAGRKRKRSKTSNYLISLD 376
Query: 175 ADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGS 234
++SR+ S ++GK+RSN LGTKF I+D + P R
Sbjct: 377 PKDMSRNGSNFVGKVRSNVLGTKFTIFDNGVNPERSYWVPDSARIR-------------- 422
Query: 235 YNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFA 294
+ V YE NVLG RGPR+M + + + + ++ P+ +DS S
Sbjct: 423 EELGVVCYETNVLGFRGPRKMTVILPGMDSRKQRM--------KVQPQNDQDSILS---- 470
Query: 295 RSIDNSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTV 354
R G G L+L+NK+P W ++ + LNF GRVT
Sbjct: 471 ------------RVQKGAGHGL-----------LLLQNKAPSWSDESGAYVLNFHGRVTR 507
Query: 355 ASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPL 414
ASVKNFQ++ P +PD ++LQFG+V ++FTMD+RYPL
Sbjct: 508 ASVKNFQIVH-----------------------PDEPDHLVLQFGRVAPNIFTMDFRYPL 544
Query: 415 SAFQAFAICLTSFDTKLACE 434
QAFAICL+SFD KLACE
Sbjct: 545 CPLQAFAICLSSFDGKLACE 564
>TUB1_CAEEL (Q09306) Tubby protein homolog 1
Length = 426
Score = 144 bits (364), Expect = 3e-34
Identities = 98/281 (34%), Positives = 135/281 (47%), Gaps = 70/281 (24%)
Query: 154 FLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLS 213
FLL+A++ +++T Y++S D N+SR Y K+RSN LGT+F +YD+
Sbjct: 216 FLLAARKRKKSTTANYLLSTDPTNLSREGEGYCAKVRSNALGTQFTVYDSGQ-------- 267
Query: 214 PPGRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSV 273
N KK + +A V YE NVLG +GPR+M M I +
Sbjct: 268 --------NPKKTTNHAAIRQ-ELAAVIYETNVLGFKGPRKMTIVMPGIEPPT------- 311
Query: 274 PGKPELLPRALEDSFRSISFARSIDNSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNK 333
+P A+ R I D T R +D+ + +L NK
Sbjct: 312 ENRP-----AVRCPVRPIQ-----DKHTLLERYRLNDL-------------DSLKILSNK 348
Query: 334 SPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDK 393
SP+W+++ Q + LNF GRVT ASVKNFQ+I S P+
Sbjct: 349 SPQWNDETQSYVLNFHGRVTQASVKNFQIIHQ-----------------------SSPEY 385
Query: 394 IILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
I++QFG++ D FTMD+RYPLSA QAF I +TSF KLACE
Sbjct: 386 IVMQFGRISDDEFTMDFRYPLSAVQAFGIAMTSFHGKLACE 426
>TUL2_HUMAN (O00295) Tubby related protein 2 (Tubby-like protein 2)
Length = 520
Score = 125 bits (314), Expect = 2e-28
Identities = 93/311 (29%), Positives = 142/311 (44%), Gaps = 82/311 (26%)
Query: 124 IQCFIKRDKSKLT------YHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADN 177
+QC++ RDK + Y+L+L S +L +FLL+ ++ RR+ + Y+IS+D
Sbjct: 286 MQCYLTRDKHGVDKGLFPLYYLYLETSDSLQ----RFLLAGRKRRRSKTSNYLISLDPTL 341
Query: 178 ISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNI 237
+SR ++GK+RSN TKF I+D ++P N+ ++ + +
Sbjct: 342 LSRDGDNFVGKVRSNVFSTKFTIFDNG-------VNPDREHLTRNTARIRQE-------L 387
Query: 238 AQVTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFARSI 297
V YE NVLG GPR+M + PG R
Sbjct: 388 GAVCYEPNVLGYLGPRKMTVIL--------------PGTNSQNQRINVQPL--------- 424
Query: 298 DNSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASV 357
N E +R+ + K+ L+L NK+P W ++ + LNF GRVT ASV
Sbjct: 425 -NEQESLLSRY-----------QRGDKQGLLLLHNKTPSWDKENGVYTLNFHGRVTRASV 472
Query: 358 KNFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAF 417
KNFQ++ P + ++LQFG+VG D FTMD+ +P S
Sbjct: 473 KNFQIV-----------------------DPKHQEHLVLQFGRVGPDTFTMDFCFPFSPL 509
Query: 418 QAFAICLTSFD 428
QAF+ICL+SF+
Sbjct: 510 QAFSICLSSFN 520
>TUL4_MOUSE (Q9JIL5) Tubby-like protein 4 (Tubby superfamily protein)
Length = 1547
Score = 57.8 bits (138), Expect = 5e-08
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 26/103 (25%)
Query: 329 VLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPP 388
V+ NK P W+E Q + L+F GRVT S KNFQ+
Sbjct: 1470 VMANKQPLWNEATQVYQLDFGGRVTQESAKNFQI-------------------------- 1503
Query: 389 SDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKL 431
+ ++QFG++ + + +D++YP SA QAFA+ L + +L
Sbjct: 1504 ELEGRQVMQFGRIDGNAYILDFQYPFSAVQAFAVALANVTQRL 1546
>TUL4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)
Length = 1544
Score = 57.4 bits (137), Expect = 7e-08
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 26/103 (25%)
Query: 329 VLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPP 388
V+ NK P W+E Q + L+F GRVT S KNFQ+
Sbjct: 1467 VMANKQPLWNEATQVYQLDFGGRVTQESAKNFQI-------------------------- 1500
Query: 389 SDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKL 431
+ ++QFG++ + +D++YP SA QAFA+ L + +L
Sbjct: 1501 ELEGRQVMQFGRIDGSAYILDFQYPFSAVQAFAVALANVTQRL 1543
>UPS2_CORGL (Q8NNC1) Undecaprenyl pyrophosphate synthetase 2 (EC
2.5.1.31) (UPP synthetase 2)
(Di-trans-poly-cis-decaprenylcistransferase 2)
(Undecaprenyl diphosphate synthase 2) (UDS 2)
Length = 243
Score = 34.7 bits (78), Expect = 0.49
Identities = 37/139 (26%), Positives = 56/139 (39%), Gaps = 24/139 (17%)
Query: 19 RRSFDVI--LPGHSRSKSRSSVHELHDQPLVIQSSRWASLPPELLRDVIKRLETNESA-- 74
RRS D + L G +R R +LH++ + + RW P L R VI+ LET E
Sbjct: 73 RRSTDEVRFLMGFNRDVLRRQRDDLHEKGVRV---RWVGRRPRLWRSVIRELETAEELTK 129
Query: 75 ------------WPGRKHVVACAAVCKSWREMCKEIVGSPEFCGKITFPVSLKQPGYRDG 122
+ GR ++ A + + E PE + TFP L +P D
Sbjct: 130 DNTTMTLAMCVNYGGRAEIIDAA---RDIARLAAEGKLRPEQITEKTFPNFLDEPDMPD- 185
Query: 123 PIQCFIKRDKSKLTYHLFL 141
+ F++ K T + L
Sbjct: 186 -VDLFLRPSGEKRTSNFLL 203
>CD5S_MOUSE (O35926) Cyclin-dependent kinase 5 activator 2 precursor
(CDK5 activator 2) (Cyclin-dependent kinase 5 regulatory
subunit 2) (P39) (P39I)
Length = 369
Score = 33.5 bits (75), Expect = 1.1
Identities = 17/37 (45%), Positives = 21/37 (55%), Gaps = 3/37 (8%)
Query: 364 AATQPASGGGAPPTGTGAAPPSQPP---SDPDKIILQ 397
AA P SGGG PP AP + PP S P ++I+Q
Sbjct: 144 AAPPPGSGGGKPPPPPPPAPQAAPPAPGSSPRRVIVQ 180
>VASP_CANFA (P50551) Vasodilator-stimulated phosphoprotein (VASP)
Length = 383
Score = 33.1 bits (74), Expect = 1.4
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 336 RWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPS 385
+W + Q W LNF G A+ + +A + GGG PP AAPP+
Sbjct: 80 QWRDARQVWGLNF-GSKEDATQFAAAMASALEALEGGGPPPPPPPAAPPT 128
>UPS2_COREF (Q8FNG2) Undecaprenyl pyrophosphate synthetase 2 (EC
2.5.1.31) (UPP synthetase 2)
(Di-trans-poly-cis-decaprenylcistransferase 2)
(Undecaprenyl diphosphate synthase 2) (UDS 2)
Length = 243
Score = 33.1 bits (74), Expect = 1.4
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 18/136 (13%)
Query: 19 RRSFDVI--LPGHSRSKSRSSVHELHDQPLVIQSSRWASLPPELLRDVIKRLETNESAWP 76
RRS + + L G +R R LH++ + + RW P L R VI+ LE E
Sbjct: 73 RRSTEEVRFLMGFNRDVLRRQRDGLHEKGVRV---RWVGRRPRLWRSVIRELEAAEELTK 129
Query: 77 GRKHVVAC--------AAVCKSWREMCKEIVGS---PEFCGKITFPVSLKQPGYRDGPIQ 125
++ A + + RE+ ++ PE + TFP L +P D +
Sbjct: 130 DNTNMTLAMCVNYGGRAEIIDAAREIARQAAAGQLRPEQINEKTFPDFLDEPDMPD--VD 187
Query: 126 CFIKRDKSKLTYHLFL 141
F++ K T + L
Sbjct: 188 LFLRPSGEKRTSNFLL 203
>ANXB_MOUSE (P97384) Annexin A11 (Annexin XI) (Calcyclin-associated
annexin 50) (CAP-50)
Length = 503
Score = 32.7 bits (73), Expect = 1.9
Identities = 15/37 (40%), Positives = 19/37 (50%)
Query: 368 PASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKD 404
PA+ GG P G G PPS PP D + G+ +D
Sbjct: 15 PAAPGGGPWGGAGYPPPSMPPIGLDNVANYAGQFNQD 51
>B3A3_RAT (P23348) Anion exchange protein 3 (Neuronal band 3-like
protein)
Length = 1227
Score = 32.3 bits (72), Expect = 2.4
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 202 DTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRR 254
D P + + SP R+ R +++K P PS SY++ + + LG GP +
Sbjct: 196 DQSPQRSGSSPSPRARASRISTEKSRPWSPSASYDLRERLCPGSALGNPGPEQ 248
>B3A3_MOUSE (P16283) Anion exchange protein 3 (Neuronal band 3-like
protein)
Length = 1227
Score = 32.3 bits (72), Expect = 2.4
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 202 DTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRR 254
D P + + SP R+ R +++K P PS SY++ + + LG GP +
Sbjct: 196 DQSPQRSGSSPSPRARASRISTEKSRPWSPSASYDLRERLCPGSALGNPGPEQ 248
>E2F1_HUMAN (Q01094) Transcription factor E2F1 (E2F-1)
(Retinoblastoma binding protein 3) (RBBP-3) (PRB-binding
protein E2F-1) (PBR3) (Retinoblastoma-associated protein
1) (RBAP-1)
Length = 437
Score = 32.0 bits (71), Expect = 3.2
Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 3/46 (6%)
Query: 350 GRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKII 395
G + + +I+A Q AS APP TG A P+ P DPD ++
Sbjct: 23 GALRLLDSSQIVIISAAQDAS---APPAPTGPAAPAAGPCDPDLLL 65
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,367,689
Number of Sequences: 164201
Number of extensions: 2447370
Number of successful extensions: 8110
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 7977
Number of HSP's gapped (non-prelim): 115
length of query: 434
length of database: 59,974,054
effective HSP length: 113
effective length of query: 321
effective length of database: 41,419,341
effective search space: 13295608461
effective search space used: 13295608461
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0052b.11