BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0052a.2
(68 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RNF5_CAEEL (Q09463) RING finger protein 5 80 1e-15
PEXA_PICAN (Q00940) Peroxisome assembly protein PER8 (Peroxin-10) 47 1e-05
PEXA_SCHPO (Q9UUF0) Peroxisome assembly protein 10 (Peroxin-10) 46 2e-05
PEXA_ARATH (Q9SYU4) Peroxisome assembly protein 10 (Peroxin-10) ... 45 5e-05
PEXA_HUMAN (O60683) Peroxisome assembly protein 10 (Peroxin-10) 43 2e-04
UVS2_NEUCR (P33288) Postreplication repair protein uvs-2 40 0.001
CO1H_MOUSE (Q9R1A8) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (... 40 0.001
CO1H_HUMAN (Q8NHY2) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (... 40 0.001
RN23_MOUSE (Q9ESN2) RING finger protein 23 (Testis-abundant fing... 39 0.002
RN23_HUMAN (Q9HCM9) RING finger protein 23 (Testis-abundant fing... 39 0.002
BRC1_CANFA (Q95153) Breast cancer type 1 susceptibility protein ... 39 0.002
BRC1_RAT (O54952) Breast cancer type 1 susceptibility protein ho... 39 0.003
BRC1_PONPY (Q6J6J0) Breast cancer type 1 susceptibility protein ... 39 0.003
BRC1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein ... 39 0.003
BRC1_MOUSE (P48754) Breast cancer type 1 susceptibility protein ... 39 0.003
BRC1_MACMU (Q6J6I9) Breast cancer type 1 susceptibility protein ... 39 0.003
BRC1_HUMAN (P38398) Breast cancer type 1 susceptibility protein 39 0.003
BRC1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein ... 39 0.003
BRC1_BOVIN (Q864U1) Breast cancer type 1 susceptibility protein ... 39 0.003
TRM2_MOUSE (Q9ESN6) Tripartite motif-containing protein 2 (Neura... 38 0.004
>RNF5_CAEEL (Q09463) RING finger protein 5
Length = 235
Score = 79.7 bits (195), Expect = 1e-15
Identities = 32/61 (52%), Positives = 44/61 (71%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNTS 60
CNIC D A+D V++LCG+LF WPCL +WL +Q CPVC + + +K+VP++GRG S
Sbjct: 26 CNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIYGRGGDS 85
Query: 61 S 61
S
Sbjct: 86 S 86
>PEXA_PICAN (Q00940) Peroxisome assembly protein PER8 (Peroxin-10)
Length = 295
Score = 46.6 bits (109), Expect = 1e-05
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 3/53 (5%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPL 53
C +C +DP CG++F W C+ W+ Q+CP+C A E +L+PL
Sbjct: 245 CMLCLSPMKDPSCGECGHVFCWKCVLDWV---KERQECPLCRAKMRESQLLPL 294
>PEXA_SCHPO (Q9UUF0) Peroxisome assembly protein 10 (Peroxin-10)
Length = 306
Score = 45.8 bits (107), Expect = 2e-05
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPL 53
C++C + P T CG++F W C+ W S +CP+C A + K++ L
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGWT---SKKSECPLCRAFSSPSKIILL 305
>PEXA_ARATH (Q9SYU4) Peroxisome assembly protein 10 (Peroxin-10)
(AthPEX10) (Pex10p) (PER8)
Length = 381
Score = 44.7 bits (104), Expect = 5e-05
Identities = 18/54 (33%), Positives = 27/54 (49%), Gaps = 3/54 (5%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLH 54
C +C Q P T CG++F W C+ +W + Q+CP+C LV L+
Sbjct: 327 CTLCLSTRQHPTATPCGHVFCWSCIMEWC---NEKQECPLCRTPNTHSSLVCLY 377
>PEXA_HUMAN (O60683) Peroxisome assembly protein 10 (Peroxin-10)
Length = 326
Score = 42.7 bits (99), Expect = 2e-04
Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 3/53 (5%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPL 53
C +C + + P T CG+LF W C+ W S +CP+C KL+ L
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWC---SSKAECPLCREKFPPQKLIYL 322
>UVS2_NEUCR (P33288) Postreplication repair protein uvs-2
Length = 501
Score = 40.0 bits (92), Expect = 0.001
Identities = 20/58 (34%), Positives = 31/58 (52%), Gaps = 8/58 (13%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGN 58
C++C D P++T C + F C+ + L S+ +CP+C A +E KL RGN
Sbjct: 34 CHVCKDFYDSPMLTSCNHTFCSLCIRRCL---SVDSKCPLCRATDQESKL-----RGN 83
>CO1H_MOUSE (Q9R1A8) Ubiquitin ligase protein COP1 (EC 6.3.2.-)
(Constitutive photomorphogenesis protein 1 homolog)
(mCOP1)
Length = 733
Score = 40.0 bits (92), Expect = 0.001
Identities = 18/53 (33%), Positives = 32/53 (59%), Gaps = 4/53 (7%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEE-DKLVP 52
C ICFD+ ++ +T CG+ F + C+++ L ++ +CP CN + + D L P
Sbjct: 138 CPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNN---RCPKCNYVVDNIDHLYP 187
>CO1H_HUMAN (Q8NHY2) Ubiquitin ligase protein COP1 (EC 6.3.2.-)
(Constitutive photomorphogenesis protein 1 homolog)
(hCOP1)
Length = 731
Score = 40.0 bits (92), Expect = 0.001
Identities = 18/53 (33%), Positives = 32/53 (59%), Gaps = 4/53 (7%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEE-DKLVP 52
C ICFD+ ++ +T CG+ F + C+++ L ++ +CP CN + + D L P
Sbjct: 136 CPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNN---RCPKCNYVVDNIDHLYP 185
>RN23_MOUSE (Q9ESN2) RING finger protein 23 (Testis-abundant
finger protein) (Tripartite motif-containing protein
39)
Length = 488
Score = 38.9 bits (89), Expect = 0.002
Identities = 16/52 (30%), Positives = 25/52 (47%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVP 52
C++C + ++PVI CG+ F C+ +W CPVC + L P
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLRP 80
>RN23_HUMAN (Q9HCM9) RING finger protein 23 (Testis-abundant
finger protein) (Tripartite motif-containing protein
39)
Length = 518
Score = 38.9 bits (89), Expect = 0.002
Identities = 16/52 (30%), Positives = 25/52 (47%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVP 52
C++C + ++PVI CG+ F C+ +W CPVC + L P
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLRP 80
>BRC1_CANFA (Q95153) Breast cancer type 1 susceptibility protein
homolog
Length = 1878
Score = 38.9 bits (89), Expect = 0.002
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVC 41
C IC +L ++PV T C ++F C+ K L+ QCP+C
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGPSQCPLC 64
>BRC1_RAT (O54952) Breast cancer type 1 susceptibility protein
homolog
Length = 1817
Score = 38.5 bits (88), Expect = 0.003
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVC 41
C IC +L ++PV T C ++F C+ K L+ QCP+C
Sbjct: 24 CPICLELIKEPVSTQCDHIFCKFCMLKLLNQKKGPSQCPLC 64
>BRC1_PONPY (Q6J6J0) Breast cancer type 1 susceptibility protein
homolog
Length = 1863
Score = 38.5 bits (88), Expect = 0.003
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVC 41
C IC +L ++PV T C ++F C+ K L+ QCP+C
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLC 64
>BRC1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein
homolog
Length = 1863
Score = 38.5 bits (88), Expect = 0.003
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVC 41
C IC +L ++PV T C ++F C+ K L+ QCP+C
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLC 64
>BRC1_MOUSE (P48754) Breast cancer type 1 susceptibility protein
homolog
Length = 1812
Score = 38.5 bits (88), Expect = 0.003
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVC 41
C IC +L ++PV T C ++F C+ K L+ QCP+C
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLC 64
>BRC1_MACMU (Q6J6I9) Breast cancer type 1 susceptibility protein
homolog
Length = 1863
Score = 38.5 bits (88), Expect = 0.003
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVC 41
C IC +L ++PV T C ++F C+ K L+ QCP+C
Sbjct: 24 CPICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGPSQCPLC 64
>BRC1_HUMAN (P38398) Breast cancer type 1 susceptibility protein
Length = 1863
Score = 38.5 bits (88), Expect = 0.003
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVC 41
C IC +L ++PV T C ++F C+ K L+ QCP+C
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLC 64
>BRC1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein
homolog
Length = 1863
Score = 38.5 bits (88), Expect = 0.003
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVC 41
C IC +L ++PV T C ++F C+ K L+ QCP+C
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLC 64
>BRC1_BOVIN (Q864U1) Breast cancer type 1 susceptibility protein
homolog
Length = 1849
Score = 38.5 bits (88), Expect = 0.003
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVC 41
C IC +L ++PV T C ++F C+ K L+ QCP+C
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLC 64
>TRM2_MOUSE (Q9ESN6) Tripartite motif-containing protein 2 (Neural
activity-related RING finger protein)
Length = 744
Score = 38.1 bits (87), Expect = 0.004
Identities = 15/41 (36%), Positives = 24/41 (57%)
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVC 41
C+IC + ++P + C + F CL ++ HSL+ CPVC
Sbjct: 23 CSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVC 63
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.137 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,049,871
Number of Sequences: 164201
Number of extensions: 242462
Number of successful extensions: 1098
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 154
length of query: 68
length of database: 59,974,054
effective HSP length: 44
effective length of query: 24
effective length of database: 52,749,210
effective search space: 1265981040
effective search space used: 1265981040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0052a.2