BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0051b.7
(189 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YFJJ_ECOLI (P52125) Hypothetical protein yfjJ 32 1.1
AFAD_RAT (O35889) Afadin (Af-6 protein) 30 3.3
SLD2_YEAST (P34252) DNA replication regulator SLD2 (DNA replicat... 30 4.3
TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36) 29 5.7
RP24_YEAST (Q07915) Ribosome biogenesis protein RLP24 (Ribosomal... 29 7.4
PLE1_RAT (P30427) Plectin 1 (PLTN) (PCN) 29 7.4
PLE1_HUMAN (Q15149) Plectin 1 (PLTN) (PCN) (Hemidesmosomal prote... 29 7.4
PLE1_CRIGR (Q9JI55) Plectin 1 (PLTN) (PCN) (300-kDa intermediate... 29 7.4
MTLD_VIBCH (Q9KKQ6) Mannitol-1-phosphate 5-dehydrogenase (EC 1.1... 29 7.4
MRP_RABIT (P35566) MARCKS-related protein (Macrophage myristoyla... 29 7.4
PCD8_RAT (Q9JM53) Programmed cell death protein 8, mitochondrial... 28 9.7
GAG_MLVRD (P11269) Gag polyprotein [Contains: Core protein p15; ... 28 9.7
AAC2_DICDI (P14196) AAC-rich mRNA clone AAC11 protein (Fragment) 28 9.7
>YFJJ_ECOLI (P52125) Hypothetical protein yfjJ
Length = 208
Score = 31.6 bits (70), Expect = 1.1
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 4 VGLDRFRVGRVTGGSGRFHRNRLRQNEDEQAISDQRSMEEEGKKLRRCSGGVARVVAAQR 63
V L R R+ +V S H N + D D +M+ + R SG ++R +A
Sbjct: 11 VSLYRDRIKQVIDDSLNEHLNSMILRVDLHDPIDTENMDNPFFQPRVDSGAISRFTSA-- 68
Query: 64 MAAQVMRRRVVAVVRSDWAPNRNRPIQLIWSR 95
+ A++ + + R DW +R+ ++ W R
Sbjct: 69 LKAKLKHDKHIKTQRKDWPDSRHSTLRYAWVR 100
>AFAD_RAT (O35889) Afadin (Af-6 protein)
Length = 1829
Score = 30.0 bits (66), Expect = 3.3
Identities = 24/89 (26%), Positives = 39/89 (42%), Gaps = 10/89 (11%)
Query: 24 NRLRQNEDEQAISDQRSMEEEGKKLRRCSGGVARVVAAQRMAAQVMRRRVVAVVRSDWAP 83
+R+RQ ED + ++R + +K R+ G +R+ A +R + RR++ P
Sbjct: 1631 DRVRQEEDGRHQEEERVKRDAEEKRRQEEGYYSRLEAERRRQHEEAARRLL----EPEEP 1686
Query: 84 NRNRPIQLIWSRFFPSLNPPSDPSEPSGP 112
+RP PPS S PS P
Sbjct: 1687 GLSRP------PLPQDYEPPSQSSAPSAP 1709
>SLD2_YEAST (P34252) DNA replication regulator SLD2 (DNA replication
and checkpoint protein 1)
Length = 453
Score = 29.6 bits (65), Expect = 4.3
Identities = 17/55 (30%), Positives = 31/55 (55%), Gaps = 6/55 (10%)
Query: 82 APNRNRPIQLIW-SRFFPSLNPPSDPSEPSGPVFGRGPVGFVQEVMVKENVHINI 135
+P +NR +L+ + P++NPP + +PSG P+ + +EN+H+NI
Sbjct: 172 SPCKNRNGKLVEIKKCSPTINPPLESGKPSGYYGPNSPL-----KLDEENIHLNI 221
>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)
Length = 3164
Score = 29.3 bits (64), Expect = 5.7
Identities = 14/32 (43%), Positives = 17/32 (52%)
Query: 87 RPIQLIWSRFFPSLNPPSDPSEPSGPVFGRGP 118
RP S SL P DP++P+ PV GR P
Sbjct: 2803 RPAVASLSESRESLPSPWDPADPTAPVLGRNP 2834
>RP24_YEAST (Q07915) Ribosome biogenesis protein RLP24 (Ribosomal
protein L24-like)
Length = 199
Score = 28.9 bits (63), Expect = 7.4
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 21 FHRNRLRQNEDEQAISDQRSMEEEGKKLRRCSGGVARVVAAQRMAAQ 67
F++NR+R N+++ + D++ +E + LR +AR +A ++ A+
Sbjct: 107 FYKNRMRGNKEKDFLRDKKLVESNPELLRIREVEIARKLAKEQERAE 153
>PLE1_RAT (P30427) Plectin 1 (PLTN) (PCN)
Length = 4687
Score = 28.9 bits (63), Expect = 7.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 104 SDPSEPSGPVFGRGPVGFVQEVMVKENVHINIFD 137
SDP+E +GPV G +++V + E +H N+ D
Sbjct: 4411 SDPTEETGPVAGILDTETLEKVSITEAMHRNLVD 4444
>PLE1_HUMAN (Q15149) Plectin 1 (PLTN) (PCN) (Hemidesmosomal protein 1)
(HD1)
Length = 4684
Score = 28.9 bits (63), Expect = 7.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 104 SDPSEPSGPVFGRGPVGFVQEVMVKENVHINIFD 137
SDP+E +GPV G +++V + E +H N+ D
Sbjct: 4408 SDPTEETGPVAGILDTETLEKVSITEAMHRNLVD 4441
>PLE1_CRIGR (Q9JI55) Plectin 1 (PLTN) (PCN) (300-kDa intermediate
filament-associated protein) (IFAP300) (Fragment)
Length = 4473
Score = 28.9 bits (63), Expect = 7.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 104 SDPSEPSGPVFGRGPVGFVQEVMVKENVHINIFD 137
SDP+E +GPV G +++V + E +H N+ D
Sbjct: 4197 SDPTEETGPVAGILDTETLEKVSITEAMHRNLVD 4230
>MTLD_VIBCH (Q9KKQ6) Mannitol-1-phosphate 5-dehydrogenase (EC
1.1.1.17)
Length = 384
Score = 28.9 bits (63), Expect = 7.4
Identities = 17/44 (38%), Positives = 27/44 (60%), Gaps = 2/44 (4%)
Query: 25 RLRQNEDEQAISDQRSMEEEGKK--LRRCSGGVARVVAAQRMAA 66
+ R + D QA+ Q+S+E+EG + L R +G A V AQ++ A
Sbjct: 335 KYRNSSDPQAVELQQSIEKEGVRSTLARYTGLAAESVEAQQIEA 378
>MRP_RABIT (P35566) MARCKS-related protein (Macrophage myristoylated
alanine-rich C kinase substrate) (Mac-MARCKS)
(MacMARCKS)
Length = 198
Score = 28.9 bits (63), Expect = 7.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 102 PPSDPSEPSGPVFGRGPVGFVQ 123
PP++PS PSGP G P G Q
Sbjct: 175 PPAEPSTPSGPESGPTPAGAEQ 196
>PCD8_RAT (Q9JM53) Programmed cell death protein 8, mitochondrial
precursor (EC 1.-.-.-) (Apoptosis-inducing factor)
Length = 612
Score = 28.5 bits (62), Expect = 9.7
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 102 PPSDPSEPSGPV----FGRGPVGFVQEVMVKENVHINIFD 137
PPSDP+ P PV +G+G + ++++ +V V N+F+
Sbjct: 543 PPSDPAVPQVPVEGEDYGKGVIFYLRDKVVVGIVLWNVFN 582
>GAG_MLVRD (P11269) Gag polyprotein [Contains: Core protein p15;
Inner coat protein p12; Core shell protein p30;
Nucleoprotein p10]
Length = 537
Score = 28.5 bits (62), Expect = 9.7
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 20 RFHRNRLRQNEDEQAISDQRSMEEEGKKLRRCSGGVARVVAAQRMAAQVMRRR 72
RF R E +A +QR E + ++ R S +A VV QR Q R+
Sbjct: 442 RFRRETEENEERRRAEDEQREKERDRRRQREMSKLLATVVTGQRQDRQGGERK 494
>AAC2_DICDI (P14196) AAC-rich mRNA clone AAC11 protein (Fragment)
Length = 448
Score = 28.5 bits (62), Expect = 9.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 94 SRFFPSLNPPSDPSEPSGPVFGRG 117
SR P NPPS+P + SGP RG
Sbjct: 163 SRGRPRKNPPSEPKDTSGPKRKRG 186
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.326 0.143 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,965,145
Number of Sequences: 164201
Number of extensions: 937310
Number of successful extensions: 3682
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3666
Number of HSP's gapped (non-prelim): 21
length of query: 189
length of database: 59,974,054
effective HSP length: 104
effective length of query: 85
effective length of database: 42,897,150
effective search space: 3646257750
effective search space used: 3646257750
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0051b.7