Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0050.12
         (143 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CYB5_TOBAC (P49098) Cytochrome b5                                     115  4e-26
CY52_ARATH (O48845) Probable cytochrome b5 isoform 2                  111  6e-25
CYB5_BOROF (O04354) Cytochrome b5                                     110  1e-24
CYS5_TOBAC (P49099) Cytochrome b5, seed isoform                       102  3e-22
CYB5_ORYSA (P49100) Cytochrome b5                                     101  6e-22
CYB5_DROME (Q9V4N3) Cytochrome b5 (CYTB5)                              99  2e-21
CY51_ARATH (Q42342) Cytochrome b5 isoform 1                            98  5e-21
CYB5_BRAOL (P40934) Cytochrome b5                                      98  7e-21
CYB5_CUSRE (P49097) Cytochrome b5                                      92  5e-19
CYB5_RHIST (Q9HFV1) Cytochrome b5                                      90  2e-18
CYB5_CANTR (Q874I5) Cytochrome b5                                      89  4e-18
CYB5_RAT (P00173) Cytochrome b5                                        83  2e-16
CYM5_HUMAN (O43169) Cytochrome b5 outer mitochondrial membrane i...    82  3e-16
CYM5_RAT (P04166) Cytochrome b5 outer mitochondrial membrane iso...    82  5e-16
CYB5_NEUCR (Q9P5L0) Probable cytochrome b5                             81  7e-16
CYB5_MUSDO (P49096) Cytochrome b5 (CYTB5)                              81  7e-16
CYB5_MOUSE (P56395) Cytochrome b5                                      81  7e-16
NIA_CICIN (P43101) Nitrate reductase [NADH] (EC 1.7.1.1) (NR)          80  2e-15
CYB5_MORAP (Q9Y706) Cytochrome b5                                      79  3e-15
CYB5_CHICK (P00174) Cytochrome b5                                      79  3e-15

>CYB5_TOBAC (P49098) Cytochrome b5
          Length = 136

 Score =  115 bits (287), Expect = 4e-26
 Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 14/139 (10%)

Query: 3   ERRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVG 62
           E +VFTL++V+QH + KDCW+VI+G+V DVTKFL +HPGGD+VLL   GKD T +F+ VG
Sbjct: 4   ETKVFTLAEVSQHNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVG 63

Query: 63  HSKEAQNLVLKYQVGILQGATVQEIDVVHKEPN----SKQEMSAFVIKEDAESKSVALFE 118
           HS  A+ ++ +Y VG +  AT+      +  PN    ++ + S FV+K         L +
Sbjct: 64  HSSSARAMLDEYYVGDIDSATI-PTKTKYTPPNQPHYNQDKTSEFVVK---------LLQ 113

Query: 119 FFVPLVVATLYFGYRCLTR 137
           F VPL++  + FG R  T+
Sbjct: 114 FLVPLIILGVAFGIRFYTK 132


>CY52_ARATH (O48845) Probable cytochrome b5 isoform 2
          Length = 134

 Score =  111 bits (277), Expect = 6e-25
 Identities = 59/139 (42%), Positives = 86/139 (61%), Gaps = 12/139 (8%)

Query: 3   ERRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVG 62
           E ++FTLS+V++H    DCW+VING+V +VTKFL +HPGGDDVLL   GKD T +F+ VG
Sbjct: 4   EAKIFTLSEVSEHNQAHDCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVG 63

Query: 63  HSKEAQNLVLKYQVGILQGATVQE--IDVVHKEPNSKQE-MSAFVIKEDAESKSVALFEF 119
           HS+ A+ ++ +Y VG +   T+ +       K+P+  Q+  S F+IK         L +F
Sbjct: 64  HSESAREMMEQYYVGEIDPTTIPKKVKYTPPKQPHYNQDKTSEFIIK---------LLQF 114

Query: 120 FVPLVVATLYFGYRCLTRT 138
            VPL +  L  G R  T++
Sbjct: 115 LVPLAILGLAVGIRIYTKS 133


>CYB5_BOROF (O04354) Cytochrome b5
          Length = 132

 Score =  110 bits (275), Expect = 1e-24
 Identities = 57/138 (41%), Positives = 85/138 (61%), Gaps = 14/138 (10%)

Query: 5   RVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGHS 64
           ++FTL++VAQH ++KDCW++ING+V DVTKFL +HPGGDDVLL   GKD T +F+ +GHS
Sbjct: 3   KIFTLAEVAQHNNSKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDIGHS 62

Query: 65  KEAQNLVLKYQVGILQGATVQEIDVVHKEPN----SKQEMSAFVIKEDAESKSVALFEFF 120
             A+ ++ +Y VG +  +++    V +  P     +  +   FVIK         L +F 
Sbjct: 63  SSAKAMLDEYYVGDIDSSSIPS-QVKYTPPKQPLYNPDKTREFVIK---------LLQFL 112

Query: 121 VPLVVATLYFGYRCLTRT 138
           VPLV+     G R  T++
Sbjct: 113 VPLVILAGAIGIRFYTKS 130


>CYS5_TOBAC (P49099) Cytochrome b5, seed isoform
          Length = 135

 Score =  102 bits (254), Expect = 3e-22
 Identities = 51/138 (36%), Positives = 86/138 (61%), Gaps = 12/138 (8%)

Query: 3   ERRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVG 62
           + +VFTL++V+ H + KDCW++I+G+V +VTKFL +HPGG +VLL   GKD T +F+ +G
Sbjct: 4   QSKVFTLAEVSNHNNAKDCWLIISGKVYNVTKFLEDHPGGGEVLLSATGKDATDDFEDIG 63

Query: 63  HSKEAQNLVLKYQVGILQGATV--QEIDVVHKEPNSKQEMSA-FVIKEDAESKSVALFEF 119
           HS  A+ ++ +Y VG +  +T+  +      K+P+  Q+ +  F++K         L +F
Sbjct: 64  HSSSARAMLDEYYVGDIDSSTIPTKVKYTPPKQPHYNQDKTTEFIVK---------LLQF 114

Query: 120 FVPLVVATLYFGYRCLTR 137
            VPL++  + FG    T+
Sbjct: 115 LVPLIILGVAFGVHFYTK 132


>CYB5_ORYSA (P49100) Cytochrome b5
          Length = 137

 Score =  101 bits (251), Expect = 6e-22
 Identities = 53/139 (38%), Positives = 86/139 (61%), Gaps = 12/139 (8%)

Query: 4   RRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGH 63
           ++V+TL +VA+H S  DCW++I G+V +V+KFL +HPGGDDVLL   GKD T +F+ VGH
Sbjct: 6   KKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGH 65

Query: 64  SKEAQNLVLKYQVGILQGATV--QEIDVVHKEPNSKQEMS-AFVIKEDAESKSVALFEFF 120
           +  A+ ++ +Y VG +  +T+  +   V  K+P+  Q+ +  F+IK         + +F 
Sbjct: 66  TTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIK---------ILQFL 116

Query: 121 VPLVVATLYFGYRCLTRTD 139
           VPL +  L    R  T+++
Sbjct: 117 VPLAILGLAVAIRIYTKSE 135


>CYB5_DROME (Q9V4N3) Cytochrome b5 (CYTB5)
          Length = 134

 Score = 99.4 bits (246), Expect = 2e-21
 Identities = 50/133 (37%), Positives = 84/133 (62%), Gaps = 13/133 (9%)

Query: 3   ERRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVG 62
           E + FT ++VA+H +NKD W++I+  + DVT FL EHPGG++VL+E AGKD T+ F+ VG
Sbjct: 5   ETKTFTRAEVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVG 64

Query: 63  HSKEAQNLVLKYQVGILQGATVQEIDVVHKEPNSKQEMSAFVIKEDAESKSVALFEFFVP 122
           HS +A++++ KY++G          ++V  E  S  + S      + +++  ++  + VP
Sbjct: 65  HSNDARDMMKKYKIG----------ELVESERTSVAQKSEPTWSTEQQTEESSVKSWLVP 114

Query: 123 LV---VATLYFGY 132
           LV   VATL++ +
Sbjct: 115 LVLCLVATLFYKF 127


>CY51_ARATH (Q42342) Cytochrome b5 isoform 1
          Length = 134

 Score = 98.2 bits (243), Expect = 5e-21
 Identities = 50/141 (35%), Positives = 85/141 (59%), Gaps = 12/141 (8%)

Query: 2   AERRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAV 61
           ++R+V +  +V++H   KDCW++I+G+V DVT F+ +HPGGD+VLL   GKD T +F+ V
Sbjct: 3   SDRKVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDV 62

Query: 62  GHSKEAQNLVLKYQVGILQGATV--QEIDVVHKEPNSKQEMS-AFVIKEDAESKSVALFE 118
           GHS  A++++ KY +G +  ++V      V  ++P   Q+ +  F+IK         + +
Sbjct: 63  GHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIK---------ILQ 113

Query: 119 FFVPLVVATLYFGYRCLTRTD 139
           F VP+++  L    R  T+ D
Sbjct: 114 FLVPILILGLALVVRHYTKKD 134


>CYB5_BRAOL (P40934) Cytochrome b5
          Length = 134

 Score = 97.8 bits (242), Expect = 7e-21
 Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 12/141 (8%)

Query: 2   AERRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAV 61
           +E++V    +V+QH   KDCW++I+G+V DVT F+ +HPGGD+VLL   GKD T +F+ V
Sbjct: 3   SEKKVLGFEEVSQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDV 62

Query: 62  GHSKEAQNLVLKYQVGILQGATV--QEIDVVHKEPNSKQEMS-AFVIKEDAESKSVALFE 118
           GHS  A++++ KY +G +  +TV      V   +P   Q+ +  F+IK         + +
Sbjct: 63  GHSDTARDMMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIK---------ILQ 113

Query: 119 FFVPLVVATLYFGYRCLTRTD 139
           F VP+++  L    R  T+ +
Sbjct: 114 FLVPILILGLALVVRQYTKKE 134


>CYB5_CUSRE (P49097) Cytochrome b5
          Length = 135

 Score = 91.7 bits (226), Expect = 5e-19
 Identities = 50/136 (36%), Positives = 79/136 (57%), Gaps = 12/136 (8%)

Query: 1   MAERRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDA 60
           M   +V++L++V++H    DCW+VI G+V DVTKFL +HPGG DVLL    KD T +F+ 
Sbjct: 1   MGGSKVYSLAEVSEHSQPNDCWLVIGGKVYDVTKFLDDHPGGADVLLSSTAKDATDDFED 60

Query: 61  VGHSKEAQNLVLKYQVGILQGATV--QEIDVVHKEPNSKQEMS-AFVIKEDAESKSVALF 117
           +GHS  A+ ++ +  VG +  +T+  +      K+P   Q+ +  F+IK         L 
Sbjct: 61  IGHSSSARAMMDEMCVGDIDSSTIPTKTSYTPPKQPLYNQDKTPQFIIK---------LL 111

Query: 118 EFFVPLVVATLYFGYR 133
           +F VPL++  +  G R
Sbjct: 112 QFLVPLIILGVAVGIR 127


>CYB5_RHIST (Q9HFV1) Cytochrome b5
          Length = 131

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 35/79 (44%), Positives = 61/79 (76%)

Query: 5  RVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGHS 64
          ++F+L +V++HK+  D WVVI+ +V D+T+F++EHPGG++VL++  GKD T+ F+ +GHS
Sbjct: 4  KIFSLDEVSKHKTKSDLWVVIHNKVYDITRFVVEHPGGEEVLVDEGGKDATEAFEDIGHS 63

Query: 65 KEAQNLVLKYQVGILQGAT 83
           EA+ ++ +Y +G L  A+
Sbjct: 64 DEAREMLEEYLIGSLDEAS 82


>CYB5_CANTR (Q874I5) Cytochrome b5
          Length = 129

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 38/96 (39%), Positives = 66/96 (68%), Gaps = 2/96 (2%)

Query: 6   VFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGHSK 65
           ++T  +VAQH ++ D WV++NG+V +++ ++ EHPGG++V+L+ AG D T+ FD +GHS 
Sbjct: 10  IYTHEEVAQHTTHDDLWVILNGKVYNISNYIDEHPGGEEVILDCAGTDATEAFDDIGHSD 69

Query: 66  EAQNLVLKYQVGILQGATVQEIDVVHKEPNSKQEMS 101
           EA  ++ K  +G L+GA +  ++  H +  S +E S
Sbjct: 70  EAHEILEKLYIGNLKGAKI--VEAKHAQSFSTEEDS 103


>CYB5_RAT (P00173) Cytochrome b5
          Length = 133

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 47/129 (36%), Positives = 71/129 (54%), Gaps = 15/129 (11%)

Query: 5   RVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGHS 64
           + +TL ++ +HK +K  WV+++ +V D+TKFL EHPGG++VL E AG D T+ F+ VGHS
Sbjct: 9   KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68

Query: 65  KEAQNLVLKYQVGILQGATVQEIDVVHKEPNSKQEMSAFVIKEDAESKSVALFEFFVP-- 122
            +A+ L   Y +G L           H +  SK    +  +    ES S     + +P  
Sbjct: 69  TDARELSKTYIIGEL-----------HPDDRSKIAKPSETLITTVESNSSWWTNWVIPAI 117

Query: 123 --LVVATLY 129
             LVVA +Y
Sbjct: 118 SALVVALMY 126


>CYM5_HUMAN (O43169) Cytochrome b5 outer mitochondrial membrane
          isoform precursor
          Length = 146

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 36/71 (50%), Positives = 54/71 (75%)

Query: 7  FTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGHSKE 66
          + L +VA+  S K+ W+VI+GRV DVT+FL EHPGG++VLLE AG D ++ F+ VGHS +
Sbjct: 23 YRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSD 82

Query: 67 AQNLVLKYQVG 77
          A+ ++ +Y +G
Sbjct: 83 AREMLKQYYIG 93


>CYM5_RAT (P04166) Cytochrome b5 outer mitochondrial membrane
          isoform precursor
          Length = 146

 Score = 81.6 bits (200), Expect = 5e-16
 Identities = 34/71 (47%), Positives = 54/71 (75%)

Query: 7  FTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGHSKE 66
          + L +VA+  + ++ W+VI+GRV D+T+FL EHPGG++VLLE AG D T+ F+ VGHS +
Sbjct: 23 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPD 82

Query: 67 AQNLVLKYQVG 77
          A+ ++ +Y +G
Sbjct: 83 AREMLKQYYIG 93


>CYB5_NEUCR (Q9P5L0) Probable cytochrome b5
          Length = 139

 Score = 81.3 bits (199), Expect = 7e-16
 Identities = 38/74 (51%), Positives = 54/74 (72%)

Query: 7  FTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGHSKE 66
          FT   VA+H + KD +VVI+ +V D+TKF+ EHPGG++VLL+VAG+D T+ F+ VGHS E
Sbjct: 5  FTYQDVAEHNTKKDLYVVIHDKVYDITKFVDEHPGGEEVLLDVAGQDSTEAFEDVGHSDE 64

Query: 67 AQNLVLKYQVGILQ 80
          A+  +    VG L+
Sbjct: 65 AREALEPLLVGTLK 78


>CYB5_MUSDO (P49096) Cytochrome b5 (CYTB5)
          Length = 134

 Score = 81.3 bits (199), Expect = 7e-16
 Identities = 44/131 (33%), Positives = 78/131 (58%), Gaps = 13/131 (9%)

Query: 5   RVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGHS 64
           + FT ++VA++ +    W +I+  V DVT FL EHPGG++VL+E AGKD T+ F+ VGHS
Sbjct: 7   KYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHS 66

Query: 65  KEAQNLVLKYQVGILQGATVQEIDVVHKEPNSKQEMSAFVIKEDAESKSVALFEFFVPLV 124
            +A+ ++ +Y+VG          ++V +E ++  E S      + +++  ++  + +P V
Sbjct: 67  SDAREMMKQYKVG----------ELVAEERSNVPEKSEPTWNTEQKTEESSMKSWLMPFV 116

Query: 125 ---VATLYFGY 132
              VATL + +
Sbjct: 117 LGLVATLIYKF 127


>CYB5_MOUSE (P56395) Cytochrome b5
          Length = 133

 Score = 81.3 bits (199), Expect = 7e-16
 Identities = 46/129 (35%), Positives = 70/129 (53%), Gaps = 15/129 (11%)

Query: 5   RVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGHS 64
           + +TL ++ +HK +K  WV+++ +V D+TKFL EHPGG++VL E AG D T+ F+ VGHS
Sbjct: 9   KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68

Query: 65  KEAQNLVLKYQVGILQGATVQEIDVVHKEPNSKQEMSAFVIKEDAESKSVALFEFFVP-- 122
            +A+ L   Y +G L           H +  SK    +  +    ES S     + +P  
Sbjct: 69  TDARELSKTYIIGEL-----------HPDDRSKIAKPSDTLITTVESNSSWWTNWVIPAI 117

Query: 123 --LVVATLY 129
             L VA +Y
Sbjct: 118 SALAVALMY 126


>NIA_CICIN (P43101) Nitrate reductase [NADH] (EC 1.7.1.1) (NR)
          Length = 920

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 48/118 (40%), Positives = 68/118 (56%), Gaps = 9/118 (7%)

Query: 7   FTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGHSKE 66
           FT+S+V +H S    W+V++G + D T FL +HPGG D +L  AG D T+EFDA+ HS +
Sbjct: 537 FTMSEVKKHNSADSAWIVVHGHIYDCTSFLKDHPGGSDSILLNAGTDCTEEFDAI-HSDK 595

Query: 67  AQNLVLKYQVGIL-------QGATVQEIDVVHKEPN-SKQEMSAFVIKEDAESKSVAL 116
           A+ L+ +Y+VG L         A     + VH   N     +S   IKE A ++SVAL
Sbjct: 596 AKKLLEEYRVGELITMGYSSDSAASSPNNSVHGATNYLTLHLSLATIKEIAPTRSVAL 653


>CYB5_MORAP (Q9Y706) Cytochrome b5
          Length = 130

 Score = 79.3 bits (194), Expect = 3e-15
 Identities = 35/77 (45%), Positives = 56/77 (72%)

Query: 1  MAERRVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDA 60
          MAE + FTL+ ++QH +    ++ I+G+V D T F+ EHPGG++VL++ AG+D T+ F+ 
Sbjct: 1  MAELKSFTLADLSQHTTKDSLYLAIHGKVYDCTGFIDEHPGGEEVLIDEAGRDATESFED 60

Query: 61 VGHSKEAQNLVLKYQVG 77
          VGHS EA++++ K  VG
Sbjct: 61 VGHSDEARDIMSKLLVG 77


>CYB5_CHICK (P00174) Cytochrome b5
          Length = 138

 Score = 79.3 bits (194), Expect = 3e-15
 Identities = 42/132 (31%), Positives = 72/132 (53%), Gaps = 15/132 (11%)

Query: 5   RVFTLSQVAQHKSNKDCWVVINGRVLDVTKFLIEHPGGDDVLLEVAGKDVTKEFDAVGHS 64
           R + L +V +H +++  W++++ R+ D+TKFL EHPGG++VL E AG D T+ F+ VGHS
Sbjct: 15  RYYRLEEVQKHNNSQSTWIIVHHRIYDITKFLDEHPGGEEVLREQAGGDATENFEDVGHS 74

Query: 65  KEAQNLVLKYQVGILQGATVQEIDVVHKEPNSKQEMSAFVIKEDAESKSVALFEFFVP-- 122
            +A+ L   + +G L           H +   K +  A  +    +S S +   + +P  
Sbjct: 75  TDARALSETFIIGEL-----------HPDDRPKLQKPAETLITTVQSNSSSWSNWVIPAI 123

Query: 123 --LVVATLYFGY 132
             ++VA +Y  Y
Sbjct: 124 AAIIVALMYRSY 135


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.320    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,795,448
Number of Sequences: 164201
Number of extensions: 594907
Number of successful extensions: 1479
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1386
Number of HSP's gapped (non-prelim): 96
length of query: 143
length of database: 59,974,054
effective HSP length: 99
effective length of query: 44
effective length of database: 43,718,155
effective search space: 1923598820
effective search space used: 1923598820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)


Lotus: description of TM0050.12