BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0048.5
         (117 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TTCA_MOUSE (Q61371) Tetratricopeptide repeat protein 10 (TPR rep...    29  2.2
YD49_SCHPO (Q10302) Hypothetical protein C22H10.09 in chromosome I     28  3.7
Y080_BUCAP (Q8KA32) Hypothetical protein BUsg080                       27  8.3
EHS1_SCHPO (Q10063) Calcium influx promoting protein ehs1              27  8.3

>TTCA_MOUSE (Q61371) Tetratricopeptide repeat protein 10 (TPR repeat
           protein 10) (Recessive polycystic kidney disease protein
           Tg737) (TgN(Imorpk)737Rpw)
          Length = 824

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 22/74 (29%), Positives = 40/74 (53%), Gaps = 8/74 (10%)

Query: 12  RSESLGHYYD-YNYYPDQNYTMMEKRQLFLRSYQFCQKK-SFTERIKGSLIRAKKVLWLR 69
           +S++  +YY+ Y Y+P  N  ++E    +    QFC+K   + ER   SLI+  +V W  
Sbjct: 602 KSQAFQYYYESYRYFP-SNIEVIEWLGAYYIDTQFCEKAIQYFER--ASLIQPTQVKWQL 658

Query: 70  LWSS---SAGGFRK 80
           + +S    +G ++K
Sbjct: 659 MVASCFRRSGNYQK 672


>YD49_SCHPO (Q10302) Hypothetical protein C22H10.09 in chromosome I
          Length = 646

 Score = 28.1 bits (61), Expect = 3.7
 Identities = 22/77 (28%), Positives = 35/77 (44%), Gaps = 15/77 (19%)

Query: 26  PDQNYTMMEKRQLFLRSYQFCQ------------KKSFTERIKGSLIRAKKVLWLRLW-- 71
           P   ++ MEK ++FLR   F Q             + F +++  SL+ AK    L++W  
Sbjct: 272 PSIAFSKMEKAEIFLRLRAFFQLMEHIDNERITPSEQFLDKVFISLLSAKNSCSLKMWLI 331

Query: 72  -SSSAGGFRKLVFFPRF 87
            S + G   K+ FF  F
Sbjct: 332 HSFNKGWPVKIEFFVSF 348


>Y080_BUCAP (Q8KA32) Hypothetical protein BUsg080
          Length = 968

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 40  LRSYQFCQKKSFTERIKGSLIRAKKVLWLRLWSSSAGGFRKLVFFPRFRCTFYYRRRRFS 99
           L  Y FC   SF+  I G  I  K +L+      +  G  K  F  +F   F  +  RFS
Sbjct: 542 LNIYSFCSLPSFSSVILGQKINWKNILYFNNIKITTNGNLKKSFPNKFFADF--KNIRFS 599

Query: 100 R 100
           +
Sbjct: 600 K 600


>EHS1_SCHPO (Q10063) Calcium influx promoting protein ehs1
          Length = 486

 Score = 26.9 bits (58), Expect = 8.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 3   SVTVNPSLFRSESLGHYYD---YNYYPDQNYTM 32
           +V  N SLF + +L  +YD   Y YY +  YT+
Sbjct: 303 AVPGNSSLFSASALAEWYDQQAYGYYQNFTYTL 335


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.329    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,633,453
Number of Sequences: 164201
Number of extensions: 465534
Number of successful extensions: 1238
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1238
Number of HSP's gapped (non-prelim): 4
length of query: 117
length of database: 59,974,054
effective HSP length: 93
effective length of query: 24
effective length of database: 44,703,361
effective search space: 1072880664
effective search space used: 1072880664
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.9 bits)