BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0048.13
(98 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
LSM8_MOUSE (Q6ZWM4) U6 snRNA-associated Sm-like protein LSm8 124 5e-29
LSM8_HUMAN (O95777) U6 snRNA-associated Sm-like protein LSm8 124 5e-29
LSM8_SCHPO (O74483) U6 snRNA-associated Sm-like protein LSm8 96 2e-20
YB18_SCHPO (P87173) Hypothetical protein C3D6.08c in chromosome II 61 4e-10
LSM1_YEAST (P47017) Sm-like protein LSm1 (SPB8 protein) 57 6e-09
LSM1_MOUSE (Q8VC85) U6 snRNA-associated Sm-like protein LSm1 54 5e-08
LSM1_HUMAN (O15116) U6 snRNA-associated Sm-like protein LSm1 (Sm... 54 5e-08
RUXG_MOUSE (P62309) Small nuclear ribonucleoprotein G (snRNP-G) ... 47 6e-06
RUXG_HUMAN (P62308) Small nuclear ribonucleoprotein G (snRNP-G) ... 47 6e-06
RUXG_MEDSA (P24715) Probable small nuclear ribonucleoprotein G (... 47 1e-05
RUXG_ARATH (O82221) Probable small nuclear ribonucleoprotein G (... 45 2e-05
RUXG_SCHPO (O74966) Probable small nuclear ribonucleoprotein G (... 45 4e-05
RUXG_DROME (Q9VXE0) Probable small nuclear ribonucleoprotein G (... 45 4e-05
RUXG_CAEEL (Q9N4G9) Probable small nuclear ribonucleoprotein G (... 42 3e-04
RSMB_YEAST (P40018) Small nuclear ribonucleoprotein associated p... 42 3e-04
YJZ2_YEAST (P47093) Hypothetical 14.5 kDa protein in MER2-BNA1 i... 39 0.002
YAU8_SCHPO (Q10163) Hypothetical protein C26A3.08 in chromosome I 39 0.002
LSM5_MOUSE (P62322) U6 snRNA-associated Sm-like protein LSm5 39 0.002
LSM5_HUMAN (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm5 39 0.002
RUXG_YEAST (P40204) Small nuclear ribonucleoprotein G (snRNP-G) ... 39 0.002
>LSM8_MOUSE (Q6ZWM4) U6 snRNA-associated Sm-like protein LSm8
Length = 95
Score = 124 bits (310), Expect = 5e-29
Identities = 56/92 (60%), Positives = 75/92 (80%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
LE+ +++ ++VIT+DGR IVGTLKGFDQ N+ILDESHERVFS+ +GV+ + LGLYI+RG
Sbjct: 4 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 63
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
DN++V+GE+DE+ D LD IRA+PL V H
Sbjct: 64 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 95
>LSM8_HUMAN (O95777) U6 snRNA-associated Sm-like protein LSm8
Length = 95
Score = 124 bits (310), Expect = 5e-29
Identities = 56/92 (60%), Positives = 75/92 (80%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
LE+ +++ ++VIT+DGR IVGTLKGFDQ N+ILDESHERVFS+ +GV+ + LGLYI+RG
Sbjct: 4 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 63
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
DN++V+GE+DE+ D LD IRA+PL V H
Sbjct: 64 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 95
>LSM8_SCHPO (O74483) U6 snRNA-associated Sm-like protein LSm8
Length = 94
Score = 95.9 bits (237), Expect = 2e-20
Identities = 40/92 (43%), Positives = 69/92 (74%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
L ++Q++ VITNDGR ++G+LKGFD TN+IL +S ER+ S + ++ I LG+Y++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
+N+++VG ++E+LD ++ +KIR + + V+H
Sbjct: 63 ENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH 94
>YB18_SCHPO (P87173) Hypothetical protein C3D6.08c in chromosome
II
Length = 140
Score = 61.2 bits (147), Expect = 4e-10
Identities = 34/92 (36%), Positives = 56/92 (59%), Gaps = 4/92 (4%)
Query: 2 STGPGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGL 61
+T L VD+++ V+ DG+ ++G L+ FDQ N++L + ER++ + I G+
Sbjct: 11 TTSGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIY-VDDMYGDIDRGV 69
Query: 62 YIIRGDNISVVGELDEDLDKNLDKSK-IRAQP 92
YI+RG+N+ ++GEL DLDK D K +R P
Sbjct: 70 YIVRGENVVLLGEL--DLDKEYDAVKQLRRMP 99
>LSM1_YEAST (P47017) Sm-like protein LSm1 (SPB8 protein)
Length = 172
Score = 57.4 bits (137), Expect = 6e-09
Identities = 29/78 (37%), Positives = 50/78 (63%), Gaps = 1/78 (1%)
Query: 2 STGPGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIA-LG 60
+T + S VD++I V+ DGR + G L+ FDQ N+IL + ER++ ++E G
Sbjct: 41 TTTAAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRG 100
Query: 61 LYIIRGDNISVVGELDED 78
+++IRG+N+ ++GE+D D
Sbjct: 101 IFMIRGENVVMLGEVDID 118
>LSM1_MOUSE (Q8VC85) U6 snRNA-associated Sm-like protein LSm1
Length = 133
Score = 54.3 bits (129), Expect = 5e-08
Identities = 30/87 (34%), Positives = 54/87 (61%), Gaps = 6/87 (6%)
Query: 1 MSTGPGLESLV---DQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLI 57
M+ PG SL+ D++ V+ DGR ++G L+ DQ N++L ++ ER+ K+ I
Sbjct: 1 MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGD-I 59
Query: 58 ALGLYIIRGDNISVVGELDEDLDKNLD 84
G++++RG+N+ ++GE+ DL+K D
Sbjct: 60 PRGIFVVRGENVVLLGEI--DLEKESD 84
>LSM1_HUMAN (O15116) U6 snRNA-associated Sm-like protein LSm1
(Small nuclear ribonuclear CaSm) (Cancer-associated
Sm-like)
Length = 133
Score = 54.3 bits (129), Expect = 5e-08
Identities = 30/87 (34%), Positives = 54/87 (61%), Gaps = 6/87 (6%)
Query: 1 MSTGPGLESLV---DQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLI 57
M+ PG SL+ D++ V+ DGR ++G L+ DQ N++L ++ ER+ K+ I
Sbjct: 1 MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGD-I 59
Query: 58 ALGLYIIRGDNISVVGELDEDLDKNLD 84
G++++RG+N+ ++GE+ DL+K D
Sbjct: 60 PRGIFVVRGENVVLLGEI--DLEKESD 84
>RUXG_MOUSE (P62309) Small nuclear ribonucleoprotein G (snRNP-G)
(Sm protein G) (Sm-G) (SmG)
Length = 76
Score = 47.4 bits (111), Expect = 6e-06
Identities = 23/72 (31%), Positives = 45/72 (61%), Gaps = 4/72 (5%)
Query: 5 PGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYII 64
P L+ +D+++S+ N GR++ G L+GFD N+++DE E S ++ +G+ +I
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQN----NIGMVVI 62
Query: 65 RGDNISVVGELD 76
RG++I ++ L+
Sbjct: 63 RGNSIIMLEALE 74
>RUXG_HUMAN (P62308) Small nuclear ribonucleoprotein G (snRNP-G)
(Sm protein G) (Sm-G) (SmG)
Length = 76
Score = 47.4 bits (111), Expect = 6e-06
Identities = 23/72 (31%), Positives = 45/72 (61%), Gaps = 4/72 (5%)
Query: 5 PGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYII 64
P L+ +D+++S+ N GR++ G L+GFD N+++DE E S ++ +G+ +I
Sbjct: 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQN----NIGMVVI 62
Query: 65 RGDNISVVGELD 76
RG++I ++ L+
Sbjct: 63 RGNSIIMLEALE 74
>RUXG_MEDSA (P24715) Probable small nuclear ribonucleoprotein G
(snRNP-G) (Sm protein G) (Sm-G) (SmG)
Length = 81
Score = 46.6 bits (109), Expect = 1e-05
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 5 PGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYII 64
P L+ +D+Q+ + R IVGTL+GFDQ N+++D + E G + +G+ +I
Sbjct: 8 PALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVE-----VNGNEKNDIGMVVI 62
Query: 65 RGDNISVVGELD 76
RG+++ V L+
Sbjct: 63 RGNSVVTVEALE 74
>RUXG_ARATH (O82221) Probable small nuclear ribonucleoprotein G
(snRNP-G) (Sm protein G) (Sm-G) (SmG)
Length = 80
Score = 45.4 bits (106), Expect = 2e-05
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 5 PGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYII 64
P L+ +D+++ + N R + GTL+GFDQ N+++D + E G +G+ +I
Sbjct: 8 PDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE-----VNGNDKTDIGMVVI 62
Query: 65 RGDNISVVGELD 76
RG++I V L+
Sbjct: 63 RGNSIVTVEALE 74
>RUXG_SCHPO (O74966) Probable small nuclear ribonucleoprotein G
(snRNP-G) (Sm protein G) (Sm-G) (SmG)
Length = 77
Score = 44.7 bits (104), Expect = 4e-05
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 5 PGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYII 64
P L+ +D+Q+ V N R + G L+G+D NI+L++S E K + + +G I
Sbjct: 7 PDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEE----KVDGEKVKIGSVAI 62
Query: 65 RGDNISVVGELDE 77
RG+++ ++ LD+
Sbjct: 63 RGNSVIMIETLDK 75
>RUXG_DROME (Q9VXE0) Probable small nuclear ribonucleoprotein G
(snRNP-G) (Sm protein G) (Sm-G) (SmG)
Length = 76
Score = 44.7 bits (104), Expect = 4e-05
Identities = 24/73 (32%), Positives = 44/73 (59%), Gaps = 6/73 (8%)
Query: 5 PGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERV-FSTKEGVQLIALGLYI 63
P ++ +D+++ + N GR + G L+GFD N++LD++ E +TK + G+ +
Sbjct: 7 PEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNI-----GMVV 61
Query: 64 IRGDNISVVGELD 76
IRG++I +V LD
Sbjct: 62 IRGNSIVMVEALD 74
>RUXG_CAEEL (Q9N4G9) Probable small nuclear ribonucleoprotein G
(snRNP-G) (Sm protein G) (Sm-G) (SmG)
Length = 77
Score = 41.6 bits (96), Expect = 3e-04
Identities = 21/68 (30%), Positives = 42/68 (60%), Gaps = 4/68 (5%)
Query: 5 PGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYII 64
P L+ +D+++ + N R + G L+GFD N+++DE+ E K+G + LG+ +I
Sbjct: 7 PELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVE---YQKDGGS-VNLGMTVI 62
Query: 65 RGDNISVV 72
RG+++ ++
Sbjct: 63 RGNSVVIM 70
>RSMB_YEAST (P40018) Small nuclear ribonucleoprotein associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
Length = 196
Score = 41.6 bits (96), Expect = 3e-04
Identities = 29/81 (35%), Positives = 43/81 (52%), Gaps = 18/81 (22%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDES-HERVFST-----------KEG- 53
L +L+D ++ V+T DGR +G L FD+ N++L+E ERV T K+G
Sbjct: 12 LANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRPRKDSKDGT 71
Query: 54 -----VQLIALGLYIIRGDNI 69
V+ LGL I+RG+ I
Sbjct: 72 TLNIKVEKRVLGLTILRGEQI 92
>YJZ2_YEAST (P47093) Hypothetical 14.5 kDa protein in MER2-BNA1
intergenic region
Length = 128
Score = 39.3 bits (90), Expect = 0.002
Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 9/85 (10%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
L+ +++++ +I DG ++ +L GFD+ TN+ + R+ +KE + ++RG
Sbjct: 24 LKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRI--SKEFI----CKAQLLRG 77
Query: 67 DNISVVGELDEDLDKNL---DKSKI 88
I++VG +D + D +L D+ K+
Sbjct: 78 SEIALVGLIDAENDDSLAPIDEKKV 102
>YAU8_SCHPO (Q10163) Hypothetical protein C26A3.08 in chromosome I
Length = 147
Score = 39.3 bits (90), Expect = 0.002
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 9 SLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGV-------QLIALGL 61
SL++ ++V T DGR VG L FD N++L + E K+ V + LGL
Sbjct: 8 SLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGL 67
Query: 62 YIIRGDNI 69
I+RG+ I
Sbjct: 68 VILRGEFI 75
>LSM5_MOUSE (P62322) U6 snRNA-associated Sm-like protein LSm5
Length = 90
Score = 39.3 bits (90), Expect = 0.002
Identities = 19/66 (28%), Positives = 38/66 (56%), Gaps = 1/66 (1%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
++ + +I ++ + IVGTL GFD N++L++ E T EG ++ L ++ G
Sbjct: 17 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEI-TPEGRRITKLDQILLNG 75
Query: 67 DNISVV 72
+NI+++
Sbjct: 76 NNITML 81
>LSM5_HUMAN (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm5
Length = 90
Score = 39.3 bits (90), Expect = 0.002
Identities = 19/66 (28%), Positives = 38/66 (56%), Gaps = 1/66 (1%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
++ + +I ++ + IVGTL GFD N++L++ E T EG ++ L ++ G
Sbjct: 17 VDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEI-TPEGRRITKLDQILLNG 75
Query: 67 DNISVV 72
+NI+++
Sbjct: 76 NNITML 81
>RUXG_YEAST (P40204) Small nuclear ribonucleoprotein G (snRNP-G)
(Sm protein G) (Sm-G) (SmG)
Length = 77
Score = 38.9 bits (89), Expect = 0.002
Identities = 24/77 (31%), Positives = 44/77 (56%), Gaps = 3/77 (3%)
Query: 1 MSTGPGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALG 60
M + P L+ +D++I + N R + G L+G+D N++LD++ E + ++ LG
Sbjct: 1 MVSTPELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAME--INGEDPANNHQLG 58
Query: 61 LY-IIRGDNISVVGELD 76
L +IRG++I + LD
Sbjct: 59 LQTVIRGNSIISLEALD 75
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.315 0.138 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,385,523
Number of Sequences: 164201
Number of extensions: 426247
Number of successful extensions: 990
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 84
length of query: 98
length of database: 59,974,054
effective HSP length: 74
effective length of query: 24
effective length of database: 47,823,180
effective search space: 1147756320
effective search space used: 1147756320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0048.13