BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0045.13
         (342 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CAFA_YERPE (P26949) F1 capsule anchoring protein precursor             32  3.0
RECO_MYCLE (Q9CCN0) DNA repair protein recO (Recombination prote...    31  3.9
YT10_MYCBO (P65046) Hypothetical protein Mb2910c                       30  6.7
YS86_MYCTU (P65045) Hypothetical protein Rv2886c/MT2954                30  6.7
SCRT_DROME (P45843) Scarlet protein                                    30  6.7
KLK9_HUMAN (Q9UKQ9) Kallikrein 9 precursor (EC 3.4.21.-) (Kallik...    30  8.8

>CAFA_YERPE (P26949) F1 capsule anchoring protein precursor
          Length = 833

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 12/76 (15%)

Query: 240 WDRGVPRLVVESDSSVAVKLINEGSDVLHPYGGMI------------SQIRQWKDRDWDF 287
           WD G+P L +  ++++  +   EG   L  Y   +            S    WK + W  
Sbjct: 155 WDDGIPALFMNYNTNMQTRKFREGGKSLDSYYAQLQPGLNIGAWRFRSSTSWWKQQGWQR 214

Query: 288 QCVHACREANSVADEL 303
             ++A R  N++   L
Sbjct: 215 SYIYAERGLNTIKSRL 230


>RECO_MYCLE (Q9CCN0) DNA repair protein recO (Recombination protein
           O)
          Length = 268

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 22/69 (31%), Positives = 32/69 (45%), Gaps = 5/69 (7%)

Query: 136 LHKVLTSGLRQQLDYVHCRNMMQNPALPRRASYHTVQVGWSPPPPAWVKCNTDGSVRGTS 195
           LH++  S LR   D    R+++ +  L R         GW+P   A  +C T G  R   
Sbjct: 114 LHRLTVSALRAVADGNRPRDLLLDAYLLRAMGI----AGWAPALTACARCATPGPHR-AF 168

Query: 196 NLAACGGVC 204
           ++AA G VC
Sbjct: 169 HIAAGGSVC 177


>YT10_MYCBO (P65046) Hypothetical protein Mb2910c
          Length = 295

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 23/55 (41%), Positives = 29/55 (51%), Gaps = 2/55 (3%)

Query: 209 GRWLFGFC-RNLGTSNVLWAELWGIFSVIQLAWDRGVPRLVVESDSSVAVKLINE 262
           GRWL   C RN   + V+WAE  G+  VI   W R V RL V +     V L++E
Sbjct: 88  GRWLSVVCCRNGSMNLVVWAEGNGVARVIAYRWLR-VGRLPVPARRVGRVILVDE 141


>YS86_MYCTU (P65045) Hypothetical protein Rv2886c/MT2954
          Length = 295

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 23/55 (41%), Positives = 29/55 (51%), Gaps = 2/55 (3%)

Query: 209 GRWLFGFC-RNLGTSNVLWAELWGIFSVIQLAWDRGVPRLVVESDSSVAVKLINE 262
           GRWL   C RN   + V+WAE  G+  VI   W R V RL V +     V L++E
Sbjct: 88  GRWLSVVCCRNGSMNLVVWAEGNGVARVIAYRWLR-VGRLPVPARRVGRVILVDE 141


>SCRT_DROME (P45843) Scarlet protein
          Length = 666

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 15/86 (17%)

Query: 75  LVPGHLFQAFIASDLCPWLLGQLRSSLLAPIGGGVVPDFGLLLWNIWTSRSCFVFQG--- 131
           L+PG + +  I   +C WL G LRS+  A    GV     +L+ N+ T+  CF       
Sbjct: 494 LLPGMIIEPLIFVIICYWLTG-LRSTFYA---FGVTAMCVVLVMNVATACGCFFSTAFNS 549

Query: 132 --------VPFDLHKVLTSGLRQQLD 149
                   VP D   ++TSG+  Q++
Sbjct: 550 VPLAMAYLVPLDYIFMITSGIFIQVN 575


>KLK9_HUMAN (Q9UKQ9) Kallikrein 9 precursor (EC 3.4.21.-)
          (Kallikrein-like protein 3) (KLK-L3)
          Length = 250

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 3/21 (14%)

Query: 5  LSWHHIWKWDGP---FKVANF 22
          L  HH+WKW+GP   F+V +F
Sbjct: 73 LGEHHLWKWEGPEQLFRVTDF 93


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.325    0.141    0.497 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,873,253
Number of Sequences: 164201
Number of extensions: 1917629
Number of successful extensions: 5174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5173
Number of HSP's gapped (non-prelim): 6
length of query: 342
length of database: 59,974,054
effective HSP length: 111
effective length of query: 231
effective length of database: 41,747,743
effective search space: 9643728633
effective search space used: 9643728633
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 66 (30.0 bits)