BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0044a.5
(578 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 235 3e-61
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 140 1e-32
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 69 3e-11
YMD9_YEAST (Q03434) Transposon Ty1 protein B 68 6e-11
YMU0_YEAST (Q04670) Transposon Ty1 protein B 68 7e-11
YMT5_YEAST (Q04214) Transposon Ty1 protein B 68 7e-11
YME4_YEAST (Q04711) Transposon Ty1 protein B 68 7e-11
YJZ9_YEAST (P47100) Transposon Ty1 protein B 68 7e-11
YJZ7_YEAST (P47098) Transposon Ty1 protein B 68 7e-11
M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300... 45 4e-04
ZCH9_MOUSE (Q8R1J3) Zinc finger CCHC domain containing protein 9 40 0.017
GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: ... 40 0.022
SSRP_FUSNN (Q8RFS8) SsrA-binding protein 38 0.083
GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; ... 37 0.11
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 37 0.14
GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; ... 37 0.14
GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; ... 37 0.14
GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; C... 37 0.14
GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosp... 37 0.14
EFG_CHRVO (Q7NQF0) Elongation factor G (EF-G) 37 0.14
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 235 bits (599), Expect = 3e-61
Identities = 177/584 (30%), Positives = 271/584 (46%), Gaps = 39/584 (6%)
Query: 10 RFDGTN-FTRWQDKMIFLLTALKIYYVLDPDLTPIAEPKDDDSDELKTERKKRREDELLC 68
+F+G N F+ WQ +M LL ++ VLD D K +D +L DE
Sbjct: 10 KFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADL---------DERAA 60
Query: 69 RGHIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIKKFLISKYFDFKMLDTKPIL 128
I LSD + + D +A IW LE + ++ K +L + + M + L
Sbjct: 61 SA-IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFL 119
Query: 129 QQVHELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWNGYRKKLLHNYEDFSLEKIQKHL 188
++ L+ ++ + + I + ++ LP S++ +LH L+ + L
Sbjct: 120 SHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSAL 179
Query: 189 RIEEESKVRDKAESSGFSKANTVTTKGK-KKYDGKQQHLGPKKEHNKFKNNNGTKGPKGG 247
+ E K+R K E+ G + T+G+ + Y + G K KN + K
Sbjct: 180 LLNE--KMRKKPENQG----QALITEGRGRSYQRSSNNYGRSGARGKSKNRS--KSRVRN 231
Query: 248 CYVCGKPDHFARDC-RQNKTKKEVNAVQVDDEIIATVS-------------EVMAVKGKV 293
CY C +P HF RDC K K E + + DD A V E M + G
Sbjct: 232 CYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPE 291
Query: 294 PGWWYDTCASVHVSYDKASFKTYSESTDDQEVQMRNEVRSKVVGTGTVELNFTSGKKVTL 353
W DT AS H + + F Y D V+M N SK+ G G + + G + L
Sbjct: 292 SEWVVDTAASHHATPVRDLFCRYVAG-DFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVL 350
Query: 354 VNVLHVPEMSRDLVSGDLLGKPGIKSVYESEKLILTRNGVFVGKGYSAEGMIKLCPIDNI 413
+V HVP++ +L+SG L + G +S + ++K LT+ + + KG + + + I
Sbjct: 351 KDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNA--EI 408
Query: 414 INKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIKSKLIS-CNIHEFEKCEICVKSKMIKK 472
N+A SV LWH R+ H+ + L K LIS + C+ C+ K +
Sbjct: 409 CQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRV 468
Query: 473 HFK-SVERKFNLLDLVHSDLCEFNGMLTRGGNRYFITFIDDCSRYTHVYLLKHKDDAFNA 531
F+ S ERK N+LDLV+SD+C + + GGN+YF+TFIDD SR VY+LK KD F
Sbjct: 469 SFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQV 528
Query: 532 FKSYKAEVENQLNKTIKVLRSDRGGEYFSTKFDSFCEEHDIIHE 575
F+ + A VE + + +K LRSD GGEY S +F+ +C H I HE
Sbjct: 529 FQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHE 572
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 140 bits (352), Expect = 1e-32
Identities = 133/581 (22%), Positives = 238/581 (40%), Gaps = 41/581 (7%)
Query: 11 FDGTNFTRWQDKMIFLLTALKIYYVLDPDLTPIAEPKDDDSDELKTERKKRREDELLCRG 70
FDG + W+ ++ LL + V+D + P + D K ER +
Sbjct: 11 FDGEKYAIWKFRIRALLAEQDVLKVVDGLM-----PNEVDDSWKKAER--------CAKS 57
Query: 71 HIMNTLSDRLYDLYTDTQSAAKIWKTLEFKFKAEEEGIKKFLISKYFDFKMLDTKPILQQ 130
I+ LSD + T +A +I + L+ ++ + + L + K+ +L
Sbjct: 58 TIIEYLSDSFLNFATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSH 117
Query: 131 VHELQVLVNKIKAVKIDIRGAFQVGAIIAKLPPSWNGYRKKLLHNYEDFSLEKIQKHLRI 190
H L++++ A I ++ ++ LP ++G + E+ K+ +
Sbjct: 118 FHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLL 177
Query: 191 EEESKVRDKAESSGFSKANTVTTKGKKKYDGKQQHLGPKKEHNKFKNNNGTKGPKGGCYV 250
++E K+++ + N + Y K FK N+ K C+
Sbjct: 178 DQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVK---CHH 234
Query: 251 CGKPDHFARDC------RQNKTKKEVNAVQVDDE--IIATVSEV--MAVKGKVPGWWYDT 300
CG+ H +DC NK K+ VQ I V EV +V G+ D+
Sbjct: 235 CGREGHIKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMVKEVNNTSVMDNC-GFVLDS 293
Query: 301 CASVHVSYDKASFKTYSESTDDQEVQMRNEVRSKVVGTGTVELNFTSGKKVTLVNVLHVP 360
AS H+ D++ + E ++ + + + T + + ++TL +VL
Sbjct: 294 GASDHLINDESLYTDSVEVVPPLKIAVAKQGEF-IYATKRGIVRLRNDHEITLEDVLFCK 352
Query: 361 EMSRDLVSGDLLGKPGIKSVYESEKLILTRNGVFVGKGYSAEGMIKLCPIDNIINKVSNS 420
E + +L+S L + G+ ++ + +++NG+ V K GM+ P+ N S +
Sbjct: 353 EAAGNLMSVKRLQEAGMSIEFDKSGVTISKNGLMVVKN---SGMLNNVPVINF-QAYSIN 408
Query: 421 AYMIDSVSLWHSRLAHIG------ISTMNRLIKSKLISCNIHEFEKCEICVKSKMIKKHF 474
A ++ LWH R HI I N L++ E CE C+ K + F
Sbjct: 409 AKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPF 468
Query: 475 KSVERKFNL---LDLVHSDLCEFNGMLTRGGNRYFITFIDDCSRYTHVYLLKHKDDAFNA 531
K ++ K ++ L +VHSD+C +T YF+ F+D + Y YL+K+K D F+
Sbjct: 469 KQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSM 528
Query: 532 FKSYKAEVENQLNKTIKVLRSDRGGEYFSTKFDSFCEEHDI 572
F+ + A+ E N + L D G EY S + FC + I
Sbjct: 529 FQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGI 569
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 68.9 bits (167), Expect = 3e-11
Identities = 85/433 (19%), Positives = 169/433 (38%), Gaps = 72/433 (16%)
Query: 176 YEDFSLEKIQKHLRIEEESKVRDKAESSGFSKANTVTTKGKKKYDG------KQQHLGPK 229
Y++ + + K + ++ S+ ++ + +S + VTT+ ++ + K ++
Sbjct: 343 YDENKIMNLNKPSQYKQHSEYKNVSRTSPNTTNTKVTTRNYQRTNSSKPRAAKAHNIATS 402
Query: 230 KEHNKFKNNNGTKGPKGGCYVCGKPDHFARDCRQNKTKKEVNAVQVDDEIIATVSEVMAV 289
+ ++ N++ + Y+ D+ +Q K K + + +DE+
Sbjct: 403 SKFSRVNNDHINESTVSSQYL--SDDNELSLGQQQKESKPTHTIDSNDEL---------- 450
Query: 290 KGKVPGWWYDTCASVHVSYDKASFKTYSES-------TDDQEVQMRNEVRSKVV--GTGT 340
H+ D + +T S T + E+ + + + + G
Sbjct: 451 -------------PDHLLIDSGASQTLVRSAHYLHHATPNSEINIVDAQKQDIPINAIGN 497
Query: 341 VELNFTSGKKVTLVNVLHVPEMSRDLVSGDLLGKPGIKSVYESEKLI---------LTRN 391
+ NF +G K T + LH P ++ DL+S L I + + L + ++
Sbjct: 498 LHFNFQNGTK-TSIKALHTPNIAYDLLSLSELANQNITACFTRNTLERSDGTVLAPIVKH 556
Query: 392 GVF--VGKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIKSK 449
G F + K Y I I+N+ S + Y L H L H ++ + +K
Sbjct: 557 GDFYWLSKKYLIPSHISKLTINNVNKSKSVNKY---PYPLIHRMLGHANFRSIQKSLKKN 613
Query: 450 LIS---------CNIHEFEKCEICVKSKMIK-KHFKSVERKFNL----LDLVHSDLCEFN 495
++ N ++ C C+ K K +H K K+ +H+D+
Sbjct: 614 AVTYLKESDIEWSNASTYQ-CPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPV 672
Query: 496 GMLTRGGNRYFITFIDDCSRYTHVYLL--KHKDDAFNAFKSYKAEVENQLNKTIKVLRSD 553
L + YFI+F D+ +R+ VY L + ++ N F S A ++NQ N + V++ D
Sbjct: 673 HHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMD 732
Query: 554 RGGEYFSTKFDSF 566
RG EY + F
Sbjct: 733 RGSEYTNKTLHKF 745
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 68.2 bits (165), Expect = 6e-11
Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 30/260 (11%)
Query: 339 GTVELNFTSGKKVTLVNVLHVPEMSRDLVSGDLLGKPGIKSVYESEKLILTRNGV----- 393
G ++ +F K T + VLH P ++ DL+S + L I + + L + V
Sbjct: 73 GDLQFHFQDNTK-TSIKVLHTPNIAYDLLSLNELAAVDITACFTKNVLERSDGTVLAPIV 131
Query: 394 ------FVGKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIK 447
+V K Y I + I+N+ S Y + H LAH T+ +K
Sbjct: 132 KYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPYPFI---HRMLAHANAQTIRYSLK 188
Query: 448 SKLISC-NIHEFEK-------CEICVKSKMIK-KHFKSVERKFNL----LDLVHSDLCEF 494
+ I+ N + ++ C C+ K K +H K K+ +H+D+
Sbjct: 189 NNTITYFNESDVDRSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGP 248
Query: 495 NGMLTRGGNRYFITFIDDCSRYTHVYLL--KHKDDAFNAFKSYKAEVENQLNKTIKVLRS 552
L + YFI+F D+ +++ VY L + +D + F + A ++NQ ++ V++
Sbjct: 249 VHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQM 308
Query: 553 DRGGEYFSTKFDSFCEEHDI 572
DRG EY + F E++ I
Sbjct: 309 DRGSEYTNRTLHKFLEKNGI 328
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 67.8 bits (164), Expect = 7e-11
Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 30/260 (11%)
Query: 339 GTVELNFTSGKKVTLVNVLHVPEMSRDLVSGDLLGKPGIKSVYESEKLILTRNGV----- 393
G ++ +F K T + VLH P ++ DL+S + L I + + L + V
Sbjct: 73 GDLQFHFQDNTK-TSIKVLHTPNIAYDLLSLNELAAVDITACFTKNVLERSDGTVLAPIV 131
Query: 394 ------FVGKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIK 447
+V K Y I + I+N+ S Y + H LAH T+ +K
Sbjct: 132 KYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPYPFI---HRMLAHANAQTIRYSLK 188
Query: 448 SKLISC-NIHEFE-------KCEICVKSKMIK-KHFKSVERKFNL----LDLVHSDLCEF 494
+ I+ N + + +C C+ K K +H K K+ +H+D+
Sbjct: 189 NNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGP 248
Query: 495 NGMLTRGGNRYFITFIDDCSRYTHVYLL--KHKDDAFNAFKSYKAEVENQLNKTIKVLRS 552
L + YFI+F D+ +++ VY L + +D + F + A ++NQ ++ V++
Sbjct: 249 VHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQM 308
Query: 553 DRGGEYFSTKFDSFCEEHDI 572
DRG EY + F E++ I
Sbjct: 309 DRGSEYTNRTLHKFLEKNGI 328
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 67.8 bits (164), Expect = 7e-11
Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 30/260 (11%)
Query: 339 GTVELNFTSGKKVTLVNVLHVPEMSRDLVSGDLLGKPGIKSVYESEKLILTRNGV----- 393
G ++ +F K T + VLH P ++ DL+S + L I + + L + V
Sbjct: 73 GDLQFHFQDNTK-TSIKVLHTPNIAYDLLSLNELAAVDITACFTKNVLERSDGTVLAPIV 131
Query: 394 ------FVGKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIK 447
+V K Y I + I+N+ S Y + H LAH T+ +K
Sbjct: 132 KYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPYPFI---HRMLAHANAQTIRYSLK 188
Query: 448 SKLISC-NIHEFE-------KCEICVKSKMIK-KHFKSVERKFNL----LDLVHSDLCEF 494
+ I+ N + + +C C+ K K +H K K+ +H+D+
Sbjct: 189 NNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGP 248
Query: 495 NGMLTRGGNRYFITFIDDCSRYTHVYLL--KHKDDAFNAFKSYKAEVENQLNKTIKVLRS 552
L + YFI+F D+ +++ VY L + +D + F + A ++NQ ++ V++
Sbjct: 249 VHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQM 308
Query: 553 DRGGEYFSTKFDSFCEEHDI 572
DRG EY + F E++ I
Sbjct: 309 DRGSEYTNRTLHKFLEKNGI 328
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 67.8 bits (164), Expect = 7e-11
Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 30/260 (11%)
Query: 339 GTVELNFTSGKKVTLVNVLHVPEMSRDLVSGDLLGKPGIKSVYESEKLILTRNGV----- 393
G ++ +F K T + VLH P ++ DL+S + L I + + L + V
Sbjct: 73 GDLQFHFQDNTK-TSIKVLHTPNIAYDLLSLNELAAVDITACFTKNVLERSDGTVLAPIV 131
Query: 394 ------FVGKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIK 447
+V K Y I + I+N+ S Y + H LAH T+ +K
Sbjct: 132 KYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPYPFI---HRMLAHANAQTIRYSLK 188
Query: 448 SKLISC-NIHEFE-------KCEICVKSKMIK-KHFKSVERKFNL----LDLVHSDLCEF 494
+ I+ N + + +C C+ K K +H K K+ +H+D+
Sbjct: 189 NNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGP 248
Query: 495 NGMLTRGGNRYFITFIDDCSRYTHVYLL--KHKDDAFNAFKSYKAEVENQLNKTIKVLRS 552
L + YFI+F D+ +++ VY L + +D + F + A ++NQ ++ V++
Sbjct: 249 VHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQM 308
Query: 553 DRGGEYFSTKFDSFCEEHDI 572
DRG EY + F E++ I
Sbjct: 309 DRGSEYTNRTLHKFLEKNGI 328
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 67.8 bits (164), Expect = 7e-11
Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 30/260 (11%)
Query: 339 GTVELNFTSGKKVTLVNVLHVPEMSRDLVSGDLLGKPGIKSVYESEKLILTRNGV----- 393
G ++ +F K T + VLH P ++ DL+S + L I + + L + V
Sbjct: 500 GDLQFHFQDNTK-TSIKVLHTPNIAYDLLSLNELAAVDITACFTKNVLERSDGTVLAPIV 558
Query: 394 ------FVGKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIK 447
+V K Y I + I+N+ S Y + H LAH T+ +K
Sbjct: 559 KYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPYPFI---HRMLAHANAQTIRYSLK 615
Query: 448 SKLISC-NIHEFE-------KCEICVKSKMIK-KHFKSVERKFNL----LDLVHSDLCEF 494
+ I+ N + + +C C+ K K +H K K+ +H+D+
Sbjct: 616 NNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGP 675
Query: 495 NGMLTRGGNRYFITFIDDCSRYTHVYLL--KHKDDAFNAFKSYKAEVENQLNKTIKVLRS 552
L + YFI+F D+ +++ VY L + +D + F + A ++NQ ++ V++
Sbjct: 676 VHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQM 735
Query: 553 DRGGEYFSTKFDSFCEEHDI 572
DRG EY + F E++ I
Sbjct: 736 DRGSEYTNRTLHKFLEKNGI 755
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 67.8 bits (164), Expect = 7e-11
Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 30/260 (11%)
Query: 339 GTVELNFTSGKKVTLVNVLHVPEMSRDLVSGDLLGKPGIKSVYESEKLILTRNGV----- 393
G ++ +F K T + VLH P ++ DL+S + L I + + L + V
Sbjct: 500 GDLQFHFQDNTK-TSIKVLHTPNIAYDLLSLNELAAVDITACFTKNVLERSDGTVLAPIV 558
Query: 394 ------FVGKGYSAEGMIKLCPIDNIINKVSNSAYMIDSVSLWHSRLAHIGISTMNRLIK 447
+V K Y I + I+N+ S Y + H LAH T+ +K
Sbjct: 559 QYGDFYWVSKRYLLPSNISVPTINNVHTSESTRKYPYPFI---HRMLAHANAQTIRYSLK 615
Query: 448 SKLISC-NIHEFE-------KCEICVKSKMIK-KHFKSVERKFNL----LDLVHSDLCEF 494
+ I+ N + + +C C+ K K +H K K+ +H+D+
Sbjct: 616 NNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGP 675
Query: 495 NGMLTRGGNRYFITFIDDCSRYTHVYLL--KHKDDAFNAFKSYKAEVENQLNKTIKVLRS 552
L + YFI+F D+ +++ VY L + +D + F + A ++NQ ++ V++
Sbjct: 676 VHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQM 735
Query: 553 DRGGEYFSTKFDSFCEEHDI 572
DRG EY + F E++ I
Sbjct: 736 DRGSEYTNRTLHKFLEKNGI 755
>M300_ARATH (P93293) Hypothetical mitochondrial protein AtMg00300
(ORF145a) (ORF1451)
Length = 145
Score = 45.4 bits (106), Expect = 4e-04
Identities = 26/69 (37%), Positives = 36/69 (51%), Gaps = 2/69 (2%)
Query: 425 DSVSLWHSRLAHIGISTMNRLIKSKLI-SCNIHEFEKCEICVKSKMIKKHFKSVERKF-N 482
D LWHSRLAH+ M L+K + S + + CE C+ K + +F + + N
Sbjct: 67 DETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKN 126
Query: 483 LLDLVHSDL 491
LD VHSDL
Sbjct: 127 PLDYVHSDL 135
>ZCH9_MOUSE (Q8R1J3) Zinc finger CCHC domain containing protein 9
Length = 273
Score = 40.0 bits (92), Expect = 0.017
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 237 NNNGTKGPKGGCYVCGKPDHFARDCRQNKTKKEV-------NAVQVDDEIIATVSEVMAV 289
N G G C +CG +HF +DCR+N+ + + D E + V ++
Sbjct: 202 NTKGVYADGGSCKLCGSVEHFKKDCRENQNSDRIITVGRWAKGMSADYEDVLDVPKLQKP 261
Query: 290 KGKVP 294
K KVP
Sbjct: 262 KTKVP 266
>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains:
Core protein p10; Core phosphoprotein p18; Core protein
p12; Core protein p27; Core protein p14; Core protein
p4]
Length = 654
Score = 39.7 bits (91), Expect = 0.022
Identities = 15/35 (42%), Positives = 20/35 (56%)
Query: 239 NGTKGPKGGCYVCGKPDHFARDCRQNKTKKEVNAV 273
N +GGC+ CGK HFA+DCR + K + V
Sbjct: 537 NNKNKDRGGCFKCGKKGHFAKDCRDHSNKNPESKV 571
>SSRP_FUSNN (Q8RFS8) SsrA-binding protein
Length = 148
Score = 37.7 bits (86), Expect = 0.083
Identities = 37/124 (29%), Positives = 54/124 (42%), Gaps = 28/124 (22%)
Query: 138 VNKIKAVKIDIRGAF------------------QVGAIIAKLPPSWNGYRKKLLHNYEDF 179
V IKA K+ I+ AF + G++ P RK LLH E
Sbjct: 30 VKSIKAGKVSIKEAFVRIINDEIFIMGMSVVPWEFGSVYN---PEERRVRKLLLHRKE-- 84
Query: 180 SLEKIQKHLRIEEESKVR-DKAESSGFSKANTVTTKGKKKYDGKQQHLGPKKEHN---KF 235
++KI + ++I+ + V D S G+ K KGKK YD ++ +E N +F
Sbjct: 85 -IKKIHEKVKIKGYTIVPLDVHLSKGYVKMQIAIAKGKKTYDKRESIAKKDQERNLKREF 143
Query: 236 KNNN 239
KNNN
Sbjct: 144 KNNN 147
>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 442
Score = 37.4 bits (85), Expect = 0.11
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 240 GTKGPKGGCYVCGKPDHFARDCRQ 263
G KG CY CGKP H AR CRQ
Sbjct: 379 GQKGVNQKCYNCGKPGHLARQCRQ 402
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 37.0 bits (84), Expect = 0.14
Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 41/174 (23%)
Query: 186 KHLRIEEESKVRD--KAESSGFSKANTVTTKGKKKYDGKQQHLGPKKEHNKFKNNNGTKG 243
K +++ ++SK+ ++SS N V T KK K++ + K E K ++ KG
Sbjct: 182 KFIQMHQQSKIVSVKPSKSSQQVDVNKVDTNRSKK---KKKPIPRKPE--KSSQDSKKKG 236
Query: 244 PKGGCYVCGKPDHFARDCRQN-KTKKEVNAVQVDDEIIATVSEVMAVKGKVPGWWYDTCA 302
C+ C K H+A +CR N KT + KGK G C
Sbjct: 237 EIPTCFYCNKKGHYATNCRSNPKTGNQGGN-----------------KGKSKG-----CD 274
Query: 303 SVHVSYDKASFKTYSESTDDQEVQMRNEVRSKVVGTGTVELNFTSGKKVTLVNV 356
SVHV D KT E Q ++ + +V G V +G +TL++V
Sbjct: 275 SVHV--DGLDVKT--------EHQAKHRMSVEVCGK-DVAFQLDTGSMITLISV 317
>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 442
Score = 37.0 bits (84), Expect = 0.14
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 240 GTKGPKGGCYVCGKPDHFARDCRQ 263
G KG CY CGKP H AR CRQ
Sbjct: 379 GHKGVNQKCYNCGKPGHLARQCRQ 402
Score = 31.6 bits (70), Expect = 5.9
Identities = 24/81 (29%), Positives = 36/81 (43%), Gaps = 10/81 (12%)
Query: 190 IEEESKVRDKAESSGFSK---ANTVTTKGKKKYDGKQQHLGPKKEHNKFKNNNGTKGPKG 246
+EE+ + S GF A + +GK + G Q K +N K + + +
Sbjct: 348 VEEKMQACRDVGSEGFKMQLLAQALRPQGKAGHKGVNQ-----KCYNCGKPGHLARQCRQ 402
Query: 247 G--CYVCGKPDHFARDCRQNK 265
G C+ CGK H +DCRQ K
Sbjct: 403 GIICHHCGKRGHMQKDCRQKK 423
>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 442
Score = 37.0 bits (84), Expect = 0.14
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 240 GTKGPKGGCYVCGKPDHFARDCRQ 263
G KG CY CGKP H AR CRQ
Sbjct: 379 GHKGVNQKCYNCGKPGHLARQCRQ 402
Score = 31.6 bits (70), Expect = 5.9
Identities = 24/81 (29%), Positives = 36/81 (43%), Gaps = 10/81 (12%)
Query: 190 IEEESKVRDKAESSGFSK---ANTVTTKGKKKYDGKQQHLGPKKEHNKFKNNNGTKGPKG 246
+EE+ + S GF A + +GK + G Q K +N K + + +
Sbjct: 348 VEEKMQACRDVGSEGFKMQLLAQALRPQGKAGHKGVNQ-----KCYNCGKPGHLARQCRQ 402
Query: 247 G--CYVCGKPDHFARDCRQNK 265
G C+ CGK H +DCRQ K
Sbjct: 403 GIICHHCGKRGHMQKDCRQKK 423
>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core
protein p25; Core protein p14]
Length = 442
Score = 37.0 bits (84), Expect = 0.14
Identities = 15/24 (62%), Positives = 15/24 (62%)
Query: 240 GTKGPKGGCYVCGKPDHFARDCRQ 263
G KG CY CGKP H AR CRQ
Sbjct: 379 GHKGVNQKCYNCGKPGHLARQCRQ 402
Score = 31.6 bits (70), Expect = 5.9
Identities = 24/81 (29%), Positives = 36/81 (43%), Gaps = 10/81 (12%)
Query: 190 IEEESKVRDKAESSGFSK---ANTVTTKGKKKYDGKQQHLGPKKEHNKFKNNNGTKGPKG 246
+EE+ + S GF A + +GK + G Q K +N K + + +
Sbjct: 348 VEEKMQACRDVGSEGFKMQLLAQALRPQGKAGHKGVNQ-----KCYNCGKPGHLARQCRQ 402
Query: 247 G--CYVCGKPDHFARDCRQNK 265
G C+ CGK H +DCRQ K
Sbjct: 403 GIICHHCGKRGHMQKDCRQKK 423
>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10;
Phosphorylated protein pp21; Protein p3; Protein p8;
Major core protein p27; Nucleic acid binding protein
p14]
Length = 591
Score = 37.0 bits (84), Expect = 0.14
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 229 KKEHNKFKNNNGTKGPKGGCYVCGKPDHFARDCRQNKTKK 268
K+ + K G+KGP C+ CGK H RDC++ K K
Sbjct: 510 KQTYGGGKGGQGSKGPV--CFSCGKTGHIKRDCKEEKGSK 547
>EFG_CHRVO (Q7NQF0) Elongation factor G (EF-G)
Length = 698
Score = 37.0 bits (84), Expect = 0.14
Identities = 31/113 (27%), Positives = 52/113 (45%), Gaps = 6/113 (5%)
Query: 278 EIIATVSEVMAVKGKVPGWWYDTCASVHVSYDKASFKTYSESTDDQEVQMRNEVRSKVVG 337
E++ + +EV A+KG+ G + AS + +FK ++ Q R V S VV
Sbjct: 284 ELLPSPTEVPAIKGETDGVEAERHASDDEPFSALAFKLMNDPYVGQLTFFR--VYSGVVK 341
Query: 338 TGTVELNFTSGKKVTLVNVLHVPEMSR----DLVSGDLLGKPGIKSVYESEKL 386
+G LN GKK + ++ + R ++ +GD+ G+K V E L
Sbjct: 342 SGDTVLNSVKGKKERIGRIVQMHANDRKEIEEVRAGDIAAAIGLKEVTTGETL 394
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,410,835
Number of Sequences: 164201
Number of extensions: 2934976
Number of successful extensions: 8872
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 8738
Number of HSP's gapped (non-prelim): 148
length of query: 578
length of database: 59,974,054
effective HSP length: 116
effective length of query: 462
effective length of database: 40,926,738
effective search space: 18908152956
effective search space used: 18908152956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)
Lotus: description of TM0044a.5