BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0042.2
(173 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
APA1_HUMAN (P02647) Apolipoprotein A-I precursor (Apo-AI) 33 0.42
YK69_YEAST (P36165) Hypothetical 102.7 kDa protein in PRP16-SRP4... 32 0.94
COBU_ECOLI (P46886) Bifunctional adenosylcobalamin biosynthesis ... 31 1.6
TRIA_HUMAN (Q15643) Thyroid receptor interacting protein 11 (TRI... 30 2.1
IGA_NEIGO (P09790) IgA-specific serine endopeptidase precursor (... 30 2.1
O106_HUMAN (Q9UPV9) 106 kDa O-GlcNAc transferase-interacting pro... 30 3.6
CHD2_HUMAN (O14647) Chromodomain-helicase-DNA-binding protein 2 ... 30 3.6
APA1_PAPHA (P68293) Apolipoprotein A-I precursor (Apo-AI) 30 3.6
APA1_MACFA (P68292) Apolipoprotein A-I precursor (Apo-AI) 30 3.6
INCE_CHICK (P53352) Inner centromere protein 29 4.7
HEMY_ECOLI (P09128) HemY protein 29 4.7
T3C1_MOUSE (Q8K284) General transcription factor 3C polypeptide ... 29 6.1
VL96_IRV1 (P22856) L96 protein 28 8.0
SG1_HUMAN (P05060) Secretogranin I precursor (SgI) (Chromogranin... 28 8.0
NIN_MOUSE (Q61043) Ninein 28 8.0
>APA1_HUMAN (P02647) Apolipoprotein A-I precursor (Apo-AI)
Length = 267
Score = 32.7 bits (73), Expect = 0.42
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 16/154 (10%)
Query: 12 RSENPTKLRWSQRRHFCAV---LCRDDGSHSTSQAESSTITLWKHNSELVHALFVPPNEP 68
+ + P + W + + V + +D G SQ E S + +L L +
Sbjct: 23 QQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSAL-----GKQLNLKLLDNWDSV 77
Query: 69 TKLNKLLREQVKDTTGRIWFDMPAQT--INPELQKD--ETSLQLRAAID---PKRHYKKG 121
T LREQ+ T W ++ +T + E+ KD E +++ +D K +
Sbjct: 78 TSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEME 137
Query: 122 NSKSKALPKYFQASSGAR-KVREIEEQNQPAGNE 154
+ K P + GAR K+ E++E+ P G E
Sbjct: 138 LYRQKVEPLRAELQEGARQKLHELQEKLSPLGEE 171
>YK69_YEAST (P36165) Hypothetical 102.7 kDa protein in PRP16-SRP40
intergenic region
Length = 910
Score = 31.6 bits (70), Expect = 0.94
Identities = 19/62 (30%), Positives = 33/62 (52%), Gaps = 3/62 (4%)
Query: 78 QVKDTTGRIWFDMPAQTINP---ELQKDETSLQLRAAIDPKRHYKKGNSKSKALPKYFQA 134
Q K + GR+ F M A+T +P EL S++ A +D K H+ + + + + K + +
Sbjct: 777 QKKTSMGRLMFPMDAKTYDPESHELIPHSASIETPAMVDKKLHFGRKSRYLRHMNKKWVS 836
Query: 135 SS 136
SS
Sbjct: 837 SS 838
>COBU_ECOLI (P46886) Bifunctional adenosylcobalamin biosynthesis
protein cobU [Includes: Adenosylcobinamide kinase (EC
2.7.1.156); Adenosylcobinamide-phosphate
guanylyltransferase (EC 2.7.7.62)]
Length = 181
Score = 30.8 bits (68), Expect = 1.6
Identities = 33/125 (26%), Positives = 49/125 (38%), Gaps = 16/125 (12%)
Query: 47 TITLWKHNSELVHALFVPPNE-------PTKLNKLLREQVKDTTGRIW-FDMPAQTINPE 98
T+ W+H EL+HA + PNE T + LL + D W + Q IN E
Sbjct: 57 TVERWQHLDELIHA-DINPNEVVLLECVTTMVTNLLFDYGGDKDPDEWDYQAMEQAINAE 115
Query: 99 LQKDETSLQLRAA--IDPKRHYKKGNSKSKALPKYFQASSGARKVREIEEQNQPAGNEKW 156
+Q + Q A + G L ++F+ +G + +Q A NE W
Sbjct: 116 IQSLIAACQRCPAKVVLVTNEVGMGIVPESRLARHFRDIAG-----RVNQQLAAAANEVW 170
Query: 157 KVKGG 161
V G
Sbjct: 171 LVVSG 175
>TRIA_HUMAN (Q15643) Thyroid receptor interacting protein 11 (TRIP-11)
(Golgi-associated microtubule-binding protein 210)
(GMAP-210) (Trip230) (Clonal evolution related gene on
chromosome 14)
Length = 1979
Score = 30.4 bits (67), Expect = 2.1
Identities = 18/63 (28%), Positives = 31/63 (48%), Gaps = 2/63 (3%)
Query: 100 QKDETSLQLRAAIDPKRHYKKGNSKSKALPKYFQASSGARKVREIEEQNQPAGNEKWKVK 159
Q+DET+LQL + + + Y + + + ++FQ A E+E+Q Q +WK
Sbjct: 1651 QRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQKQLIA--EWKKN 1708
Query: 160 GGN 162
N
Sbjct: 1709 AEN 1711
>IGA_NEIGO (P09790) IgA-specific serine endopeptidase precursor (EC
3.4.21.72) (IgA protease)
Length = 1532
Score = 30.4 bits (67), Expect = 2.1
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 37 SHSTSQAESSTITLWKHNSELVHALFVPPN-EPTKLNKLLREQVKDTTGRIWFDMPAQTI 95
+++ SQA+ +T T ++ + + PP+ + + + LR+Q K ++ A+
Sbjct: 990 ANTASQAQKATQTDGAQIAKPQNIVVAPPSPQANQAEEALRQQAK--AEQVKRQQAAEAE 1047
Query: 96 NPELQKDETSLQLRAAIDPKRHYKKGNSKSKALPKYFQASSGARKVREIEEQNQPAGNEK 155
QKDE + R A + R ++ ++ K Q + RK RE+ Q + +
Sbjct: 1048 KVARQKDEEAK--RKAAEIARQQEEARKAAELAAK--QKAEAERKARELARQKAEEASHQ 1103
Query: 156 WKVKGGNSRKRA 167
K R+RA
Sbjct: 1104 ANAKPKRRRRRA 1115
>O106_HUMAN (Q9UPV9) 106 kDa O-GlcNAc transferase-interacting
protein
Length = 953
Score = 29.6 bits (65), Expect = 3.6
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 13/110 (11%)
Query: 69 TKLNKLLREQVKDTTGRIWFDMPAQTINPELQKDETSLQLRAAIDPKRHYK-------KG 121
T+ N+LL EQV+ + + EL + LQ + + + K
Sbjct: 144 TERNELLEEQVEHIREEV------SQLRHELSMKDELLQFYTSAAEESEPESVCSTPLKR 197
Query: 122 NSKSKALPKYFQASSGARKVREIEEQNQPAGNEKWKVKGGNSRKRAKERR 171
N S ++ YF S +K++++EE+N +E ++K KE++
Sbjct: 198 NESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEASQLKTETITYEEKEQQ 247
>CHD2_HUMAN (O14647) Chromodomain-helicase-DNA-binding protein 2
(CHD-2)
Length = 1739
Score = 29.6 bits (65), Expect = 3.6
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 70 KLNKLLREQVKDTTGRIWFDMPAQTINPELQKDETSLQLRAAIDPKRHYKKGNSKSKALP 129
K NK+ R +K+ G I P + NP + + L + K+ KK N ++K
Sbjct: 1348 KENKVPR--LKEEHG-IELSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENK--- 1401
Query: 130 KYFQASSGARKVREIEEQNQPAGNEKWKVKGGNSRKRAKERRN 172
+ +RK +E +++ + + ++K K K G+++ +K +R+
Sbjct: 1402 ---EKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRS 1441
>APA1_PAPHA (P68293) Apolipoprotein A-I precursor (Apo-AI)
Length = 267
Score = 29.6 bits (65), Expect = 3.6
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 16/154 (10%)
Query: 12 RSENPTKLRWSQRRHFCAVLC---RDDGSHSTSQAESSTITLWKHNSELVHALFVPPNEP 68
+ + P + W + + V +D G SQ E S + +L L +
Sbjct: 23 QQDEPPQTPWDRVKDLVTVYVEALKDSGKDYVSQFEGSAL-----GKQLNLKLLDNWDSV 77
Query: 69 TKLNKLLREQVKDTTGRIWFDMPAQT--INPELQKD--ETSLQLRAAID---PKRHYKKG 121
T LREQ+ T W ++ +T + E+ KD E +++ +D K +
Sbjct: 78 TSTVSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEME 137
Query: 122 NSKSKALPKYFQASSGAR-KVREIEEQNQPAGNE 154
+ K P + G R K+ E+ E+ P G E
Sbjct: 138 LYRQKVEPLRAELHEGTRQKLHELHEKLSPLGEE 171
>APA1_MACFA (P68292) Apolipoprotein A-I precursor (Apo-AI)
Length = 267
Score = 29.6 bits (65), Expect = 3.6
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 16/154 (10%)
Query: 12 RSENPTKLRWSQRRHFCAVLC---RDDGSHSTSQAESSTITLWKHNSELVHALFVPPNEP 68
+ + P + W + + V +D G SQ E S + +L L +
Sbjct: 23 QQDEPPQTPWDRVKDLVTVYVEALKDSGKDYVSQFEGSAL-----GKQLNLKLLDNWDSV 77
Query: 69 TKLNKLLREQVKDTTGRIWFDMPAQT--INPELQKD--ETSLQLRAAID---PKRHYKKG 121
T LREQ+ T W ++ +T + E+ KD E +++ +D K +
Sbjct: 78 TSTVSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEME 137
Query: 122 NSKSKALPKYFQASSGAR-KVREIEEQNQPAGNE 154
+ K P + G R K+ E+ E+ P G E
Sbjct: 138 LYRQKVEPLRAELHEGTRQKLHELHEKLSPLGEE 171
>INCE_CHICK (P53352) Inner centromere protein
Length = 877
Score = 29.3 bits (64), Expect = 4.7
Identities = 37/171 (21%), Positives = 67/171 (38%), Gaps = 13/171 (7%)
Query: 1 MRKQRTERIRLRSENPTKLRWSQRRHFCAVLCRDDGSHSTSQAESSTITLWKHNSELVHA 60
+RKQ+ E + R + KLR +R VL + + + K E A
Sbjct: 522 LRKQKVEEEKKRRQEEAKLRREERLR--KVLQARERAEQLEEER-------KRRIEQKLA 572
Query: 61 LFVPPNEPTKLNKLLREQVKD-TTGRIWFDMPAQTINPELQKDETSLQLRAAIDPKRHYK 119
LF E + +L E++K + + A+ E + + +LQ + +R +K
Sbjct: 573 LFDEKTEKAREERLAEEKIKKRAAAKKMEEAEARRRQDEEARKQKALQQE---EEERRHK 629
Query: 120 KGNSKSKALPKYFQASSGARKVREIEEQNQPAGNEKWKVKGGNSRKRAKER 170
+ K K + ++ E E + Q A + + K RK+ +ER
Sbjct: 630 ELMQKKKEEEQERARKIAEQRQAEQEREKQLAAEREQERKKEQERKKEEER 680
>HEMY_ECOLI (P09128) HemY protein
Length = 398
Score = 29.3 bits (64), Expect = 4.7
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 3/49 (6%)
Query: 66 NEPTKLNKLLREQVKDTTGR--IWFDMPAQTINPELQKDETSLQLRAAI 112
N P +L K+LR+Q+K+ R +W + Q++ + E SL RAA+
Sbjct: 308 NNPEQLEKVLRQQIKNVGDRPLLWSTL-GQSLMKHGEWQEASLAFRAAL 355
>T3C1_MOUSE (Q8K284) General transcription factor 3C polypeptide 1
(Transcription factor IIIC-alpha subunit) (TF3C-alpha)
(TFIIIC 220 kDa subunit) (TFIIIC220) (TFIIIC box
B-binding subunit)
Length = 2101
Score = 28.9 bits (63), Expect = 6.1
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 115 KRHYKKGNSKSKALPKYFQASSGARKVREIEEQ----NQPAGNEKWKVKGGNSRKRAKER 170
KR G+ S LP + + + A + EEQ +P KV+GG S+KR + +
Sbjct: 1156 KRPMPLGSGGSGRLPLWSEGRADAELCADKEEQFELDREPTPGRNRKVRGGKSQKRKRLK 1215
Query: 171 R 171
+
Sbjct: 1216 K 1216
>VL96_IRV1 (P22856) L96 protein
Length = 867
Score = 28.5 bits (62), Expect = 8.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 120 KGNSKSKALPKYFQASSGARKVREIEEQNQPAGNEKWKVK 159
+ S S PKY A +KV E++E + G +KWK K
Sbjct: 259 RSRSNSPVRPKYRAADLLGKKVVELKELAKMEGLKKWKDK 298
>SG1_HUMAN (P05060) Secretogranin I precursor (SgI) (Chromogranin B)
(CgB) [Contains: GAWK peptide; CCB peptide]
Length = 677
Score = 28.5 bits (62), Expect = 8.0
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 100 QKDETSLQLRAAIDPKRHYKKGNSKSKALPKYFQASSGARKVREIEEQNQPAGNEKWKVK 159
+ + T ++R DP + S S+ +GA +I+ + A EKW
Sbjct: 75 ENENTKFEVRLLRDPADASEAHESSSRG-------EAGAPGEEDIQGPTK-ADTEKWAEG 126
Query: 160 GGNSRKRAKE 169
GG+SR+RA E
Sbjct: 127 GGHSRERADE 136
>NIN_MOUSE (Q61043) Ninein
Length = 2035
Score = 28.5 bits (62), Expect = 8.0
Identities = 22/97 (22%), Positives = 41/97 (41%), Gaps = 14/97 (14%)
Query: 55 SELVHALFVPPNEPTKLNKLLREQVKDTTGRIWFDMPAQTINPELQKDETSLQLRAAIDP 114
++L H L + P LL++ + GR+ FD K+ L L +
Sbjct: 34 TDLCHVLCLEDVGPVLQQTLLQDNL---LGRVHFDQ---------FKEALILILSRTLSS 81
Query: 115 KRHYKKGNSKSKALPKYFQASS--GARKVREIEEQNQ 149
+ H+++ + +A PKY + G R + E +E +
Sbjct: 82 EEHFEESDCSPEAQPKYVRGGKRYGRRSLPEFQESGE 118
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.313 0.128 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,537,013
Number of Sequences: 164201
Number of extensions: 782953
Number of successful extensions: 1728
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1726
Number of HSP's gapped (non-prelim): 15
length of query: 173
length of database: 59,974,054
effective HSP length: 103
effective length of query: 70
effective length of database: 43,061,351
effective search space: 3014294570
effective search space used: 3014294570
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0042.2