BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0042.15
(352 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
HMGA_SOYBN (Q00423) HMG-Y related protein A (SB16A protein) 99 2e-20
H12_ARATH (P26569) Histone H1.2 88 3e-17
H1_MAIZE (P23444) Histone H1 84 5e-16
H1_LYCES (P37218) Histone H1 82 3e-15
H11_ARATH (P26568) Histone H1.1 79 2e-14
HMGB_SOYBN (Q10370) HMG-Y related protein B (SB16B protein) (Fra... 77 5e-14
H1_PEA (P08283) Histone H1 (PsH1b) (PsH1b-40) 77 5e-14
H1_WHEAT (P27806) Histone H1 76 1e-13
H12_VOLCA (Q08865) Histone H1-II 70 6e-12
H1C_CHITE (P40277) Histone H1C 69 1e-11
H13_GLYBA (P40265) Histone H1-III 68 3e-11
H1B_CHITE (P40276) Histone H1B 68 4e-11
H1A_CHITE (P40275) Histone H1A 66 2e-10
H1_LYCPN (P40267) Histone H1 64 4e-10
H1_CHITH (P21895) Histone H1 64 6e-10
H11_VOLCA (Q08864) Histone H1-I 62 3e-09
H1_DICDI (P54671) Histone H1 60 6e-09
H12_GLYBA (P40264) Histone H1-II 60 8e-09
H1E_CHIPA (P40262) Histone H1E 59 1e-08
H1E_CHITE (P40278) Histone H1E 56 1e-07
>HMGA_SOYBN (Q00423) HMG-Y related protein A (SB16A protein)
Length = 176
Score = 99.0 bits (245), Expect = 2e-20
Identities = 73/182 (40%), Positives = 96/182 (52%), Gaps = 28/182 (15%)
Query: 38 PANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGL 97
P + PPY EMI + +EAL E +GS+K+AI+KYIE Y +LP A T+L HL ++KD+G
Sbjct: 9 PQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPDA--TVLGSHLNKMKDSGE 66
Query: 98 LIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKS-LSNGLKRRPPK 156
L S+K QN PP+ G RGRPPKPK+ L G PP+
Sbjct: 67 L-----SFK----------QNNYMKADPNAPPKRG----RGRPPKPKTPLPPGTVVSPPR 107
Query: 157 HQLQATVIPFADPSLAQPPVPVGSPRPRGRPRK--NAAALPPPHAVGGVDSSLMVPGRPQ 214
+ + P A P + GS RPRGRP+K + A+ P AV SS GRP
Sbjct: 108 PRGRPPKDPNAPPKSPKAKATPGSGRPRGRPKKVPRSPAVAAPTAV----SSGRPRGRPP 163
Query: 215 KL 216
K+
Sbjct: 164 KV 165
>H12_ARATH (P26569) Histone H1.2
Length = 273
Score = 88.2 bits (217), Expect = 3e-17
Identities = 73/246 (29%), Positives = 112/246 (44%), Gaps = 26/246 (10%)
Query: 6 VPPPPPPPTAVPFTQEAINHAPDSNIPINSSAP------ANHPPYAEMIYRAIEALKEKD 59
V P P A + A + P+ ++AP ++HP Y EMI AI LKE+
Sbjct: 21 VKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERT 80
Query: 60 GSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNA 119
GSS+ AI K+IEE + LPP LL +LKRL + L+ +K S+K+PS+ S T
Sbjct: 81 GSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSA-RSAATPKP 139
Query: 120 AQPVRRGRPPRSGIPKRRGR------PPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQ 173
A PV++ + + K +G+ P K K+ + G K+ K +A V A+
Sbjct: 140 AAPVKK---KATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKV-------TAK 189
Query: 174 PPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRP 233
P V + +P+ K+ AA+ AV + P + + + R P P +
Sbjct: 190 PKAKVTAAKPKS---KSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKV 246
Query: 234 KGTTSA 239
T A
Sbjct: 247 AVTKKA 252
>H1_MAIZE (P23444) Histone H1
Length = 245
Score = 84.0 bits (206), Expect = 5e-16
Identities = 72/248 (29%), Positives = 98/248 (39%), Gaps = 23/248 (9%)
Query: 7 PPPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAI 66
P P A P A + P ++P H PYAEM+ AI +LKE+ GSS AI
Sbjct: 16 PEAPADAPAAPAADANAAKAKKATAPKKRASPT-HLPYAEMVSEAITSLKERTGSSSYAI 74
Query: 67 AKYIEEAY-TDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRR 125
AK++E+ + LPP LL LK+L G L +K SYKL S+ +
Sbjct: 75 AKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLSSATKPN----------- 123
Query: 126 GRPPRSGIPKRRGRPPKPKSLSNGLK-RRPPKHQLQATVIPFADPSLAQPPVPVGSPRPR 184
PK + P KPK+ + K PK + A P P A P V P+
Sbjct: 124 --------PKPKAAPKKPKTGAKKPKAAAKPKAKTPAKAKPATKPKPAAKPKAVVKPKTP 175
Query: 185 GRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRPKGTTSANIAQR 244
+P+ AA P G L K A + K+ G+ K S A
Sbjct: 176 AKPKAKPAAKAKPKTAGAKPKPLAKKAGRAK-AAKTSAKDTPGKKAPAKKAAPSKKAATP 234
Query: 245 IANENLRR 252
+ R+
Sbjct: 235 VRKAPSRK 242
>H1_LYCES (P37218) Histone H1
Length = 287
Score = 81.6 bits (200), Expect = 3e-15
Identities = 58/169 (34%), Positives = 76/169 (44%), Gaps = 10/169 (5%)
Query: 32 PINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKR 91
P SA HPPY EMI AI LKE+ GSS+ AI K+IEE LP LL LK+
Sbjct: 47 PRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKK 106
Query: 92 LKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRP-----PKPKSL 146
+ L+ +K SYKLPS ++ AA V + P + K +P PK K
Sbjct: 107 FVASEKLVKVKNSYKLPSG-----SKPAAAAVPAKKKPAAAKSKPAAKPKAAVKPKAKPA 161
Query: 147 SNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALP 195
+ K +A A P+ P P + +P+ AAA P
Sbjct: 162 AKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPVAKAKPKAAAAAKP 210
>H11_ARATH (P26568) Histone H1.1
Length = 274
Score = 78.6 bits (192), Expect = 2e-14
Identities = 60/196 (30%), Positives = 86/196 (43%), Gaps = 16/196 (8%)
Query: 39 ANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLL 98
++HP Y EMI AI LKE+ GSS+ AI K+IEE +LPP LL +LKRL +G L
Sbjct: 60 SSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKL 119
Query: 99 IMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQ 158
+ +K S+KLPS+ + P++ K KP +++ +R
Sbjct: 120 VKVKASFKLPSA------------SAKASSPKAAAEKSAPAKKKPATVAVTKAKRKVAAA 167
Query: 159 LQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAV 218
+A P A + + PR AAA VD+ RP K A
Sbjct: 168 SKAKKTIAVKPKTAAAKKVTAKAKAKPVPRATAAATKRK----AVDAKPKAKARPAKAAK 223
Query: 219 RGRPKNPAGRPVGRPK 234
+ +PA + V K
Sbjct: 224 TAKVTSPAKKAVAATK 239
>HMGB_SOYBN (Q10370) HMG-Y related protein B (SB16B protein)
(Fragment)
Length = 152
Score = 77.4 bits (189), Expect = 5e-14
Identities = 59/182 (32%), Positives = 81/182 (44%), Gaps = 46/182 (25%)
Query: 54 ALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPS 113
AL E DGS+K+AI+KYIE Y +LP T+L HL ++K++G L + +Y
Sbjct: 1 ALNEADGSNKSAISKYIETTYGELPD--ETVLGSHLNKMKESGELAFKQNNYM------- 51
Query: 114 DITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQ 173
A P PP+ G RGRPPKPK +P ++
Sbjct: 52 -----KADP---NAPPKRG----RGRPPKPK-------------------VPLPPGTVVS 80
Query: 174 PPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRP 233
PP RPRGRP K+ A P ++ GRP+K+A +P GRP
Sbjct: 81 PP------RPRGRPPKDPNAPPKSPKAKATPATGRPRGRPKKVARSPAVPSPTAVSTGRP 134
Query: 234 KG 235
+G
Sbjct: 135 RG 136
>H1_PEA (P08283) Histone H1 (PsH1b) (PsH1b-40)
Length = 265
Score = 77.4 bits (189), Expect = 5e-14
Identities = 64/197 (32%), Positives = 92/197 (46%), Gaps = 19/197 (9%)
Query: 6 VPPPPPPPTAVPFTQEAINHAPD-SNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKT 64
VP P V T++A P ++ P N PA+HP Y EMI AI +LKEK+GSS+
Sbjct: 29 VPEKEEPKAEVEKTKKAKGSKPKKASKPRN---PASHPTYEEMIKDAIVSLKEKNGSSQY 85
Query: 65 AIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSL-------PSDITQ 117
AIAK+IEE LP LL +LK+ +G LI +K S+KL ++ P T
Sbjct: 86 AIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAAAKKPAVAKPKAKTA 145
Query: 118 NAAQPVR---RGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQP 174
A+ V+ +P + K PK S + + +P K + + A
Sbjct: 146 AKAKSVKAKPAAKPKAKAVVK-----PKVASKAKAVAAKPKKAAAKPKTVAAKTKPTAAK 200
Query: 175 PVPVGSPRPRGRPRKNA 191
P V P+ + +P K A
Sbjct: 201 PKAVVKPKSKVKPAKVA 217
>H1_WHEAT (P27806) Histone H1
Length = 238
Score = 75.9 bits (185), Expect = 1e-13
Identities = 57/192 (29%), Positives = 81/192 (41%), Gaps = 9/192 (4%)
Query: 6 VPPPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTA 65
V P P P +A P P + A HP YAEM+ AI ALKE+ GSS A
Sbjct: 23 VDTPAAKPAKAPKAAKAKKSTPGPKKPRVTPA---HPSYAEMVSEAIAALKERSGSSTIA 79
Query: 66 IAKYIEEAY-TDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVR 124
I K+IE+ + LP +L +K+L G L +K SYKL + P+ + A +
Sbjct: 80 IGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKL-AKAPAAVKPKTATKKK 138
Query: 125 RGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPR 184
P++ P ++ P + PK + A A P A P P+ +
Sbjct: 139 PAAKPKAKAPAKKTAAKSPAKKA----AAKPKAKAPAKAKAVAKPKAAAKPKAAAKPKAK 194
Query: 185 GRPRKNAAALPP 196
+K AA P
Sbjct: 195 AAAKKAPAAATP 206
>H12_VOLCA (Q08865) Histone H1-II
Length = 240
Score = 70.5 bits (171), Expect = 6e-12
Identities = 64/229 (27%), Positives = 95/229 (40%), Gaps = 24/229 (10%)
Query: 26 APDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAY-TDL-PPAHST 83
AP + HPPY +M+ AI +LKE+DGSS A+ K+IE Y D+
Sbjct: 9 APKAKTQKKPKTAPTHPPYIQMVTDAILSLKERDGSSLPALKKFIEAKYGKDIHDKKFPK 68
Query: 84 LLTHHLKRLKDTGLLIMLKKSYKL---------PSSLPSDITQNAAQPVRRGRPPRSGIP 134
L+ LK G L+ +K SYKL ++ P + AA P + P ++ P
Sbjct: 69 TLSLALKTFVKNGKLVKVKNSYKLSDAQKSKAKAAAKPKAAPKKAAAPKKAAAPKKAKAP 128
Query: 135 KRRG--RPPKPKSLSNGLKRRPPK-----HQLQATVIPFA-DPSLAQPPVPVGSPRPRGR 186
K+ G + KPKS K + K + +A P A P+ +P +P+
Sbjct: 129 KKEGEKKAVKPKSEKKAAKPKTEKKPKAAKKPKAAKKPAAKKPAAKKPAAKKATPKKAAA 188
Query: 187 PRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPA-GRPVGRPK 234
P+K AA P P+K +PK A + +PK
Sbjct: 189 PKKAAA----PKKAKAATPKKAKAATPKKAKAAAKPKAAAKPKAAAKPK 233
>H1C_CHITE (P40277) Histone H1C
Length = 221
Score = 69.3 bits (168), Expect = 1e-11
Identities = 52/202 (25%), Positives = 91/202 (44%), Gaps = 16/202 (7%)
Query: 27 PDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLT 86
P S+ P AP HPP +EM++ A++ LKE+ GSS AI K++ Y T +
Sbjct: 25 PKSDKPKKPKAPRTHPPVSEMVFNAVKTLKERGGSSLQAIKKFLIAQYKVDVDKLDTFIK 84
Query: 87 HHLKRLKDTGLLIMLK-----KSYKLPSSLPSD--ITQNAAQPVR-RGRPPRSGIPK-RR 137
+LK + G L+ K S+KLP++ + + + +P + +P ++G K ++
Sbjct: 85 KYLKSAVEKGQLLQTKGKGALGSFKLPAAAKKEKVVKKTEKKPKKAAAKPSKAGEKKVKK 144
Query: 138 GRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPP 197
KPK+ + ++P + P+ A+P +P+P+ P+ AA P
Sbjct: 145 TIAKKPKAATATKIKKPVAKTTK-------KPAAAKPAAKKAAPKPKAAPKPKAAPKPKK 197
Query: 198 HAVGGVDSSLMVPGRPQKLAVR 219
A P +K A +
Sbjct: 198 AAAPKAKKPAAKPKAAKKPAAK 219
>H13_GLYBA (P40265) Histone H1-III
Length = 228
Score = 68.2 bits (165), Expect = 3e-11
Identities = 50/202 (24%), Positives = 88/202 (42%), Gaps = 21/202 (10%)
Query: 8 PPPPPPTAVPFTQEAI---NHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKT 64
P P +AVP A P ++ P + AP HPP +EM+ AI+ LKE+ GSS
Sbjct: 4 PAPEVASAVPVASPAKAKKEKKPKTDKPKKAKAPRTHPPVSEMVVNAIKTLKERGGSSLQ 63
Query: 65 AIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLK-----KSYKLPSSLPSD-ITQN 118
AI K++ Y + + +L+ G L+ K S+KLP++ + + +
Sbjct: 64 AIKKFLAAQYKVDVDKLAPFIKKYLRGAVTKGELLQTKGKGASGSFKLPAAAKKEKVAKT 123
Query: 119 AAQPVRRGRP-----PRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQ 173
+ +P P+ + K++ KPK+ + ++P + P+ +
Sbjct: 124 PKKAAGEKKPQAAAKPKKALEKKKSIAKKPKAATATKVKKPVAKSTK-------KPAAVK 176
Query: 174 PPVPVGSPRPRGRPRKNAAALP 195
P +P+P+ P+ AA P
Sbjct: 177 PAAKKAAPKPKAAPKPKAATKP 198
>H1B_CHITE (P40276) Histone H1B
Length = 232
Score = 67.8 bits (164), Expect = 4e-11
Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 8/190 (4%)
Query: 10 PPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKY 69
P P A P + P S+ P AP HPP +EM+ A++ LKE+ GSS AI K+
Sbjct: 10 PAVPVASPAKAKK-EKKPKSDKPKKPKAPRTHPPVSEMVVNAVKTLKERGGSSLQAIKKF 68
Query: 70 IEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLK-----KSYKLPSSLPSD-ITQNAAQPV 123
+ Y + + +LK + G L+ K S+KLP++ + + + +
Sbjct: 69 LVAQYKVDVDKLAPFIKKYLKSAVEKGQLLQTKGKGASGSFKLPAAAKKEKVVKKPTKAA 128
Query: 124 RRGRPPRSGI-PKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPR 182
+P ++ PK+ G K+++ K + P+ A+P +P+
Sbjct: 129 AEKKPKKAAAKPKKAGEKKVKKTIAKKPKAAAATKIKKPVAKTTKKPAAAKPAAKKAAPK 188
Query: 183 PRGRPRKNAA 192
P+ P+ AA
Sbjct: 189 PKAAPKPKAA 198
>H1A_CHITE (P40275) Histone H1A
Length = 232
Score = 65.9 bits (159), Expect = 2e-10
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 8/190 (4%)
Query: 10 PPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKY 69
P P A P + P S+ P AP H P ++M+ A++ LKE+ GSS AI K+
Sbjct: 10 PAVPVASPAKAKK-EKKPKSDKPKKPKAPRTHLPVSDMVVNAVKTLKERGGSSVQAIKKF 68
Query: 70 IEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLK-----KSYKLPSSLPSDITQNAAQPVR 124
+ Y S + +LK + G L+ K S+KLP++ + + V
Sbjct: 69 LVAQYKVDVDKLSPFIKKYLKSAVEKGQLLQTKGKGASGSFKLPAAAKKEKVVKKPKKVA 128
Query: 125 RGRPPRSGI--PKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPR 182
+P ++ PK+ G K+++ K + P+ A+P +P+
Sbjct: 129 EKKPKKAAAPKPKKAGEKKVKKTIAKKPKAATATKIKKPVAKTTKKPAAAKPAAKKAAPK 188
Query: 183 PRGRPRKNAA 192
P+ P+ AA
Sbjct: 189 PKAAPKPKAA 198
>H1_LYCPN (P40267) Histone H1
Length = 202
Score = 64.3 bits (155), Expect = 4e-10
Identities = 50/143 (34%), Positives = 68/143 (46%), Gaps = 19/143 (13%)
Query: 26 APDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTD-LPPAHSTL 84
AP P ++ A HPPY +MI A+ AL EK GSS A+AKY+E+ + D LP +
Sbjct: 35 APKEKKPKSAKA-VTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKI 93
Query: 85 LTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNA-------AQPVRRGRPPR------- 130
L LK G LI +K SYKL + + T A ++ R R
Sbjct: 94 LGLQLKNSAAKGKLIKIKASYKLSEAGKKETTTKTSTKKLPKADSKKKPRSTRATATAAK 153
Query: 131 -SGIPKRRGRPPKPKSLSNGLKR 152
+ +PK+ PKPK + G KR
Sbjct: 154 KTEVPKKAKATPKPKKV--GAKR 174
>H1_CHITH (P21895) Histone H1
Length = 231
Score = 63.9 bits (154), Expect = 6e-10
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 8/191 (4%)
Query: 11 PPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYI 70
P P A P + P S+ P AP HPP ++MI AI+ LKE+ GSS AI K++
Sbjct: 10 PVPVASPAKAKK-EKKPKSDKPKKPKAPRTHPPVSDMIVNAIKTLKERGGSSVQAIKKFL 68
Query: 71 EEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLK-----KSYKLPSSLPSD-ITQNAAQPVR 124
Y S + +LK + G L+ K S+KLP++ + + + + V
Sbjct: 69 VAQYKVDTDKLSPFIKKYLKSAVEKGQLLQTKGKGASGSFKLPAAAKKEKVVKKVTKKVT 128
Query: 125 RGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPR 184
+P ++ + G K+++ K + P+ A+P V + +P+
Sbjct: 129 EKKPKKAVSKPKTGEKKVKKTIAKKPKVASATKIKKPVAKTTKKPAAAKPTKKVAA-KPK 187
Query: 185 GRPRKNAAALP 195
P+ AA P
Sbjct: 188 AAPKPKAAPKP 198
>H11_VOLCA (Q08864) Histone H1-I
Length = 260
Score = 61.6 bits (148), Expect = 3e-09
Identities = 65/262 (24%), Positives = 97/262 (36%), Gaps = 48/262 (18%)
Query: 7 PPPPPPPTAVPFTQEAINHAPDSNIPINSSAPA-----------------NHPPYAEMIY 49
P P A P + AP + P AP HPPY EM+
Sbjct: 7 PVVAPAAEAAPAAEAPKAKAPKAKAPKQPKAPKAPKEPKAPKEKKPKAAPTHPPYIEMVK 66
Query: 50 RAIEALKEKDGSSKTAIAKYIEEAY-TDLPPAH-STLLTHHLKRLKDTGLLIMLKKSYKL 107
AI LKE++GSS A+ K+IE Y D+ + + L+ +K G L+ +K S+KL
Sbjct: 67 DAITTLKERNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFVKGGKLVKVKGSFKL 126
Query: 108 PSSLPSDI---TQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVI 164
+L + T A+ +P +S ++ K RP K + +
Sbjct: 127 SEALKAKAKKSTPKKAKADGEAKPKKSEAKPKKAEAVKKTKAPKEKVERPKKEKKEKVEK 186
Query: 165 PFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKN 224
A P A+ P +P+ G+ + A P P A PK+
Sbjct: 187 KKATPK-AEKPKKAATPKSAGKKK----ATPKPKAA---------------------PKS 220
Query: 225 PAGRPVGRPKGTTSANIAQRIA 246
PA + K T S A + A
Sbjct: 221 PAKKDAKPKKATPSKKAAPKKA 242
>H1_DICDI (P54671) Histone H1
Length = 179
Score = 60.5 bits (145), Expect = 6e-09
Identities = 45/135 (33%), Positives = 53/135 (38%), Gaps = 13/135 (9%)
Query: 35 SSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKD 94
S NHP Y MI AI K++ GSS+ AI KYIE Y P T L LKRL
Sbjct: 17 SKPKPNHPTYQVMISTAIAHYKDRTGSSQPAIIKYIEANYNVAPDTFKTQLKLALKRLVA 76
Query: 95 TGLLIMLKKSYKL-------------PSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPP 141
G L M+K SYKL P + A PP + K + P
Sbjct: 77 KGTLTMVKASYKLSEEGKKEHQATLGPVAKKPKAKTTATSTETTAAPPATPTKKAAPKKP 136
Query: 142 KPKSLSNGLKRRPPK 156
K+ S K K
Sbjct: 137 AAKAASTSTKTAAAK 151
>H12_GLYBA (P40264) Histone H1-II
Length = 232
Score = 60.1 bits (144), Expect = 8e-09
Identities = 56/201 (27%), Positives = 88/201 (42%), Gaps = 19/201 (9%)
Query: 10 PPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKY 69
P P A P + P S+ P AP HPP +EM+ AI+ LKE+ GSS AI K+
Sbjct: 10 PAAPVASPAKAKK-EKKPKSDKPKKPKAPRTHPPVSEMVVNAIKTLKERGGSSLQAIKKF 68
Query: 70 IEEAYTDLPPAHSTLLTHHLK-RLKDTGLLIMLK-----KSYKLPSSLPSD-ITQNAAQP 122
+ Y + + +LK G L+ K S+KLP++ + + + +
Sbjct: 69 LVAQYKVDVEKLAPFIKKYLKGGAVVKGELLQTKGKGASGSFKLPAAAKKEKVAKKPMKA 128
Query: 123 VRRGRPPRSGIPKRRGR-----PPKPKSLSNGLKRRP--PKHQLQATVIPFADPSLAQP- 174
+P + PK+ G KPK+ + ++P + QA V P A + +P
Sbjct: 129 TGEKKPKAAAKPKKAGEKKKSIAKKPKAATATKVKKPVAKSTKKQAAVKPAAKKAAPKPK 188
Query: 175 --PVP-VGSPRPRGRPRKNAA 192
P P P+ +P+K AA
Sbjct: 189 AVPKPKAAKPKKEAKPKKAAA 209
>H1E_CHIPA (P40262) Histone H1E
Length = 235
Score = 59.3 bits (142), Expect = 1e-08
Identities = 60/214 (28%), Positives = 86/214 (40%), Gaps = 28/214 (13%)
Query: 27 PDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLT 86
P S+ P A HPP +EM+ AI LKE+ GSS AI K++ Y +
Sbjct: 37 PKSDKPKKPKAAPTHPPVSEMVVNAITTLKERGGSSLIAIKKFVAAQYKVDVEKLVPFIK 96
Query: 87 HHLKRLKDTGLLIMLK-----KSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPP 141
LK G L+ K S+KLP AA+ V + PK+ P
Sbjct: 97 KFLKASVAKGTLLQAKGKGASGSFKLPP---------AAKKVDK--------PKKAPAAP 139
Query: 142 KPKSLSNGLKRRPPKHQLQATVIPFADPS--LAQPPVPVGSPRPRGRPRKNAAALPPPHA 199
KPKS + + + A P A + A+P + +P +K AA P P A
Sbjct: 140 KPKSTNKRVTGEKKVVKKPAAKKPEAKKATKAAKPAAKKVAAKPAA--KKAAAPKPKPAA 197
Query: 200 VGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRP 233
+ +P+K A +P PA +P +P
Sbjct: 198 KPKKEVKPKEEAKPKKAA--AKPAKPAAKPAKKP 229
>H1E_CHITE (P40278) Histone H1E
Length = 237
Score = 56.2 bits (134), Expect = 1e-07
Identities = 58/215 (26%), Positives = 80/215 (36%), Gaps = 36/215 (16%)
Query: 27 PDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLT 86
P S+ P A HPP +EM+ AI LKE+ GSS AI K++ Y +
Sbjct: 37 PKSDKPKKPKAAPTHPPVSEMVVNAITTLKERGGSSLIAIKKFVAAQYKVDVEKLVPFIK 96
Query: 87 HHLKRLKDTGLLIMLK-----KSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPP 141
LK G L+ K S+KLP AA+ V + PK+ P
Sbjct: 97 KFLKASVAKGTLLQAKGKGASGSFKLPP---------AAKKVDK--------PKKAPATP 139
Query: 142 KPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPR---GRPRKNAAALPPPH 198
KPKS K + + + P A A+ P + +P AA P P
Sbjct: 140 KPKS----TKPKRVTGEKKVVKKPAAKKPEAKKATKAAKPAAKKVAAKPAAKKAAAPKPK 195
Query: 199 AVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRP 233
A P + K +PK A +P +P
Sbjct: 196 AAA-------KPKKEVKPKKEAKPKKAAAKPAKKP 223
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.314 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,533,516
Number of Sequences: 164201
Number of extensions: 2450714
Number of successful extensions: 15093
Number of sequences better than 10.0: 534
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 433
Number of HSP's that attempted gapping in prelim test: 12234
Number of HSP's gapped (non-prelim): 2248
length of query: 352
length of database: 59,974,054
effective HSP length: 111
effective length of query: 241
effective length of database: 41,747,743
effective search space: 10061206063
effective search space used: 10061206063
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0042.15