BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0042.10
(217 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
R11B_TOBAC (Q40521) Ras-related protein Rab11B 243 2e-64
RIC2_ORYSA (P40393) Ras-related protein RIC2 241 9e-64
RB1B_ARATH (Q39222) Ras-related protein Rab11 241 9e-64
YPT3_NICPL (Q01111) Ras-related protein YPT3 232 6e-61
R11D_LOTJA (Q40194) Ras-related protein Rab11D 231 7e-61
RAB2_BETVU (Q39434) Ras-related protein Rab2BV 227 1e-59
YPT6_CHLRE (Q39572) Ras-related protein YPTC6 226 3e-59
RGP2_ORYSA (Q40723) Ras-related protein RGP2 (GTP-binding regula... 224 1e-58
RB1C_ARATH (O04486) Ras-related protein Rab11C 224 1e-58
ARA2_ARATH (P28185) Ras-related protein ARA-2 224 1e-58
R11E_LOTJA (Q40195) Ras-related protein Rab11E 223 3e-58
R11C_LOTJA (Q40193) Ras-related protein Rab11C 223 3e-58
RB1A_ARATH (Q96283) Ras-related protein Rab11A 220 2e-57
R11B_MOUSE (P46638) Ras-related protein Rab-11B 219 3e-57
R11B_RAT (O35509) Ras-related protein Rab-11B 219 4e-57
R11B_HUMAN (Q15907) Ras-related protein Rab-11B (GTP-binding pro... 219 4e-57
R11B_DISOM (P22129) Ras-related protein Rab-11B (ORA3) 219 4e-57
YPT3_SCHPO (P17610) Ras-related protein ypt3 (RAB) 218 7e-57
R11A_RAT (P62494) Ras-related protein Rab-11A (Rab-11) (24KG) 218 1e-56
R11A_RABIT (P62493) Ras-related protein Rab-11A (Rab-11) 218 1e-56
>R11B_TOBAC (Q40521) Ras-related protein Rab11B
Length = 217
Score = 243 bits (621), Expect = 2e-64
Identities = 122/212 (57%), Positives = 165/212 (77%), Gaps = 3/212 (1%)
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
+++ DYLFK VLIGDSGVGKSNLLSRF+++EF L+SK TIGVEFA +I+V DK++KAQI
Sbjct: 8 EDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQI 67
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA+VVYDITR ++ENV WL ELR+ +++V++LVGN
Sbjct: 68 WDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGN 127
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
K+DL R V E+ K FAE E FMETSAL++LNVE F E++T+I + C+++LE
Sbjct: 128 KADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALE-- 185
Query: 187 VDEKPINVFSGKEIHL-VDEVTATKQATCCST 217
V + P + G+ I++ D+V+A K+ CCS+
Sbjct: 186 VGDDPAALPKGQTINVGKDDVSAVKKVGCCSS 217
>RIC2_ORYSA (P40393) Ras-related protein RIC2
Length = 217
Score = 241 bits (615), Expect = 9e-64
Identities = 122/210 (58%), Positives = 162/210 (77%), Gaps = 1/210 (0%)
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
+++ DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA +++V K++KAQI
Sbjct: 8 EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQI 67
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYD+TR S++ENV WL ELR+ ++VV+LVGN
Sbjct: 68 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGN 127
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
KSDL V+ +EGK FAE E L FMETSAL++ NVE F E++T+I I +RS+EA
Sbjct: 128 KSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAG 187
Query: 187 VDEKPINVFSGKEIHLVDEVTATKQATCCS 216
D+ G++I++ D+V+A K+ CCS
Sbjct: 188 -DDAGSGPGKGEKINIKDDVSAVKKGGCCS 216
>RB1B_ARATH (Q39222) Ras-related protein Rab11
Length = 216
Score = 241 bits (615), Expect = 9e-64
Identities = 122/210 (58%), Positives = 161/210 (76%), Gaps = 1/210 (0%)
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
+++ DYLFK VLIGDSGVGKSNLLSRF K+EF L+SK TIGVEFA +KV K++KAQI
Sbjct: 7 EDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQI 66
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYD+TRR+++ENV WL EL+ ++VV+LVGN
Sbjct: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGN 126
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
KSDL V E+GK +AE E LCFMETSAL+ NVE+ F E++T+I IT ++ +EA
Sbjct: 127 KSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAG 186
Query: 187 VDEKPINVFSGKEIHLVDEVTATKQATCCS 216
D +V G++I + ++V+A K+ CCS
Sbjct: 187 EDGN-ASVPKGEKIEVKNDVSALKKLGCCS 215
>YPT3_NICPL (Q01111) Ras-related protein YPT3
Length = 218
Score = 232 bits (591), Expect = 6e-61
Identities = 122/213 (57%), Positives = 158/213 (73%), Gaps = 3/213 (1%)
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
D+E DYLFK VLIGDSGVGKSNLLSRF K+EF L+SK TIGVEFA ++ + +K+IKAQI
Sbjct: 7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQI 66
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYD+TR +YENV WL ELR+ ++VV+L+GN
Sbjct: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGN 126
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
KSDL V +E KG AE EGL FMETSAL+ NVE F E +T+I I ++++EA
Sbjct: 127 KSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAG 186
Query: 187 VDEKPINVF--SGKEIHLVDEVTATKQATCCST 217
DE + G+ I++ DE ++ K+ CCS+
Sbjct: 187 -DEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218
>R11D_LOTJA (Q40194) Ras-related protein Rab11D
Length = 218
Score = 231 bits (590), Expect = 7e-61
Identities = 120/212 (56%), Positives = 156/212 (72%), Gaps = 1/212 (0%)
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
D+E DYLFK VLIGDSGVGKSNLLSRF K+EF L+SK TIGVEFA + V K++KAQI
Sbjct: 7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQI 66
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYD+TRR+++EN WL ELR+ ++VV+L+GN
Sbjct: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGN 126
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
KSDL V E+GK FAE E L FMETSAL+ NVE F E++T+I I +R++EA
Sbjct: 127 KSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAG 186
Query: 187 VDEKPINVFS-GKEIHLVDEVTATKQATCCST 217
+ S G+ I++ ++ + K+ CCST
Sbjct: 187 DSGSSSGLPSKGQTINVKEDSSVLKRFGCCST 218
>RAB2_BETVU (Q39434) Ras-related protein Rab2BV
Length = 214
Score = 227 bits (579), Expect = 1e-59
Identities = 116/217 (53%), Positives = 162/217 (74%), Gaps = 4/217 (1%)
Query: 2 MADAFDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKL 61
MA+ D E DYLFK VLIGDSGVGKSN+LSRF ++EF L+SK TIGVEFA ++V K
Sbjct: 1 MANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60
Query: 62 IKAQIWDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVV 121
+KAQIWDTAGQER+RAITS+YYRGA+GA++VYDIT+R +++NV+ WL ELR+ ++V+
Sbjct: 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVI 120
Query: 122 ILVGNKSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQR 181
++ GNKSDL R V +E+G+ AE EGL F+ETSAL+ +N+E+ F ++T+I I ++
Sbjct: 121 MMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKK 180
Query: 182 SLEAKVDEKPINV-FSGKEIHLVDEVTATKQATCCST 217
+L A+ E N+ G I++ D +A ++ +CCST
Sbjct: 181 ALAAQ--EASSNLPGQGTTINVAD-ASANQRRSCCST 214
>YPT6_CHLRE (Q39572) Ras-related protein YPTC6
Length = 216
Score = 226 bits (576), Expect = 3e-59
Identities = 115/213 (53%), Positives = 159/213 (73%), Gaps = 5/213 (2%)
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
D++ DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA +I+V K IKAQI
Sbjct: 6 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQI 65
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYDIT+ ++ENV WL ELR+ ++V++LVGN
Sbjct: 66 WDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGN 125
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
KSDL R+V+ E + F E EGL F+ETSAL++ NVE+ F +++T+I I ++ L+++
Sbjct: 126 KSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSE 185
Query: 187 VDEKPINVFSGKEIHLVDEV---TATKQATCCS 216
D +P + G+++ ++D K+ CCS
Sbjct: 186 -DNRP-KIGEGRDVIVIDNAHDDGGKKKGGCCS 216
>RGP2_ORYSA (Q40723) Ras-related protein RGP2 (GTP-binding
regulatory protein RGP2)
Length = 217
Score = 224 bits (571), Expect = 1e-58
Identities = 118/218 (54%), Positives = 155/218 (70%), Gaps = 5/218 (2%)
Query: 2 MADAFDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKL 61
M D E YLFK VLIGD+GVGKSN+LSRF ++ F LDSK TIGVEFA ++++ K
Sbjct: 1 MGGRVDHEYSYLFKMVLIGDTGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKT 60
Query: 62 IKAQIWDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVV 121
IKAQIWDTAGQER+RAITS+YYRGA+GA++VYDIT+R S++NV WL ELR+ +V+
Sbjct: 61 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVI 120
Query: 122 ILVGNKSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQR 181
++VGNKSDL R V ++EGK AE EGL F+ETSA++ +NVEE F +IT++ I ++
Sbjct: 121 MMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRK 180
Query: 182 SL---EAKVDEKPINVFSGKEIHLVDEVTATKQATCCS 216
+L EA +P+ GK I + TK+A CCS
Sbjct: 181 ALAAKEAAAASRPL-PSQGKTISIDSAAGNTKRA-CCS 216
>RB1C_ARATH (O04486) Ras-related protein Rab11C
Length = 217
Score = 224 bits (571), Expect = 1e-58
Identities = 111/216 (51%), Positives = 155/216 (71%)
Query: 2 MADAFDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKL 61
MA DEE DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA ++V +
Sbjct: 1 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
Query: 62 IKAQIWDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVV 121
+KAQIWDTAGQER+RAITS+YYRGALGA++VYD+T+ +++ENV WL ELR+ ++V+
Sbjct: 61 VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 120
Query: 122 ILVGNKSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQR 181
+L+GNK+DL R V E+ + +AE EGL F+ETSAL+ LNVE+ F +++++ I ++
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKK 180
Query: 182 SLEAKVDEKPINVFSGKEIHLVDEVTATKQATCCST 217
S+ + N+ G+ I + + + CCS+
Sbjct: 181 SISSDQTTANANIKEGQTIDVAATSESNAKKPCCSS 216
>ARA2_ARATH (P28185) Ras-related protein ARA-2
Length = 216
Score = 224 bits (571), Expect = 1e-58
Identities = 116/210 (55%), Positives = 150/210 (71%), Gaps = 1/210 (0%)
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
DEE DYLFK VLIGDSGVGKSNLLSRF K+EF L+SK TIGVEFA KV K++KAQI
Sbjct: 7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQI 66
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA+++YD+TR +++EN WL ELR ++VV+L+GN
Sbjct: 67 WDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGN 126
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
K DL V+ EE K FAE E L FMETSAL NVE F E++T+I I +RS++
Sbjct: 127 KCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGG 186
Query: 187 VDEKPINVFSGKEIHLVDEVTATKQATCCS 216
+ + G+ I++ ++ + K+ CCS
Sbjct: 187 GESADL-PGKGETINVKEDGSVLKRMGCCS 215
>R11E_LOTJA (Q40195) Ras-related protein Rab11E
Length = 218
Score = 223 bits (567), Expect = 3e-58
Identities = 116/212 (54%), Positives = 154/212 (71%), Gaps = 3/212 (1%)
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
D+E DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA ++ + K+IKAQI
Sbjct: 7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQI 66
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYD+TR +++E WL ELR+ ++VV+L+GN
Sbjct: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGN 126
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
KSDL V E+GK FAE E L FMETSAL+ NVE F E++T+I I +R++EA
Sbjct: 127 KSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAG 186
Query: 187 VDEKPINVF--SGKEIHLVDEVTATKQATCCS 216
D +V G+ I++ ++ + + CCS
Sbjct: 187 -DRPSTSVVPSQGQTINVNEDSSVLNRYRCCS 217
>R11C_LOTJA (Q40193) Ras-related protein Rab11C
Length = 216
Score = 223 bits (567), Expect = 3e-58
Identities = 114/217 (52%), Positives = 156/217 (71%), Gaps = 2/217 (0%)
Query: 2 MADAFDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKL 61
MA D E DYLFK VLIGDSGVGKSN+LSRF ++EF L+SK TIGVEFA ++V K
Sbjct: 1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60
Query: 62 IKAQIWDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVV 121
+KAQIWDTAGQER+RAITS+YYRGA+GA++VYDIT+R +++NV+ WL ELR+ ++V+
Sbjct: 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVI 120
Query: 122 ILVGNKSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQR 181
++ GNKSDL R V +++G +E EGL F+ETSAL+ N+E+ F ++T+I I ++
Sbjct: 121 MMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKK 180
Query: 182 SLEAKVDEKPINV-FSGKEIHLVDEVTATKQATCCST 217
+L A+ +V G I++ D TK+ CCST
Sbjct: 181 ALAAQEATAGASVPGQGTTINVADTSGNTKKG-CCST 216
>RB1A_ARATH (Q96283) Ras-related protein Rab11A
Length = 217
Score = 220 bits (561), Expect = 2e-57
Identities = 112/217 (51%), Positives = 153/217 (69%), Gaps = 1/217 (0%)
Query: 2 MADAFDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKL 61
M D+E DYLFK VLIGDSGVGKSN+LSRF ++EF L+SK TIGVEFA +V K
Sbjct: 1 MTHRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKT 60
Query: 62 IKAQIWDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVV 121
IKAQIWDTAGQER+RAITS+YYRGA+GA++VYDIT+R +++NV WL ELR+ ++V+
Sbjct: 61 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 120
Query: 122 ILVGNKSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQR 181
++ GNKSDL R V +E+G+ AE EGL F+ETSAL+ NVE+ F ++ +I I ++
Sbjct: 121 MMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKK 180
Query: 182 SLEAKVDEKPINVFSGKEIHL-VDEVTATKQATCCST 217
+L A+ + G+ + VD+ + + CCS+
Sbjct: 181 ALAAQEAAAANSAIPGQGTTINVDDTSGGAKRACCSS 217
>R11B_MOUSE (P46638) Ras-related protein Rab-11B
Length = 218
Score = 219 bits (559), Expect = 3e-57
Identities = 115/213 (53%), Positives = 146/213 (67%), Gaps = 2/213 (0%)
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
D+E DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA +I+V K IKAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYDI + +YENV WL ELR+ ++V++LVGN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSL--E 184
KSDL R V +E + FAE L F+ETSAL + NVEE F ++T+I I Q+ +
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADR 184
Query: 185 AKVDEKPINVFSGKEIHLVDEVTATKQATCCST 217
A DE P N + + + CC +
Sbjct: 185 AAHDESPGNNVVDISVPPTTDGQRPNKLQCCQS 217
>R11B_RAT (O35509) Ras-related protein Rab-11B
Length = 218
Score = 219 bits (558), Expect = 4e-57
Identities = 113/189 (59%), Positives = 140/189 (73%), Gaps = 2/189 (1%)
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
D+E DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA +I+V K IKAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYDI + +YENV WL ELR+ ++V++LVGN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSL--E 184
KSDL R V +E + FAE L F+ETSAL + NVEE F ++T+I I Q+ +
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADR 184
Query: 185 AKVDEKPIN 193
A DE P N
Sbjct: 185 AAHDESPGN 193
>R11B_HUMAN (Q15907) Ras-related protein Rab-11B (GTP-binding
protein YPT3)
Length = 218
Score = 219 bits (558), Expect = 4e-57
Identities = 113/189 (59%), Positives = 140/189 (73%), Gaps = 2/189 (1%)
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
D+E DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA +I+V K IKAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYDI + +YENV WL ELR+ ++V++LVGN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSL--E 184
KSDL R V +E + FAE L F+ETSAL + NVEE F ++T+I I Q+ +
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADR 184
Query: 185 AKVDEKPIN 193
A DE P N
Sbjct: 185 AAHDESPGN 193
>R11B_DISOM (P22129) Ras-related protein Rab-11B (ORA3)
Length = 218
Score = 219 bits (558), Expect = 4e-57
Identities = 114/211 (54%), Positives = 146/211 (69%), Gaps = 2/211 (0%)
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
D+E DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA +I+V K IKAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYDI + +YENV WL ELR+ ++V++LVGN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGN 124
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
KSDL R V +E + FAE L F+ETSAL + NVEE F ++T+I I Q+ + +
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQISDR 184
Query: 187 V--DEKPINVFSGKEIHLVDEVTATKQATCC 215
DE P N + + + + CC
Sbjct: 185 SAHDESPGNNVVDISVPPTTDGQKSNKLQCC 215
>YPT3_SCHPO (P17610) Ras-related protein ypt3 (RAB)
Length = 214
Score = 218 bits (556), Expect = 7e-57
Identities = 111/182 (60%), Positives = 139/182 (75%)
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
++E DYLFKTVLIGDSGVGKSNLL RF ++EF ++SK TIGVEFA NI + +K IKAQI
Sbjct: 4 EDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQI 63
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYDIT++SS++NV WL ELRE ++V++LVGN
Sbjct: 64 WDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGN 123
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
K+DL R V EE + FA L F+ETSA+ NVEE F ++T+I I RSLEA
Sbjct: 124 KTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAG 183
Query: 187 VD 188
D
Sbjct: 184 DD 185
>R11A_RAT (P62494) Ras-related protein Rab-11A (Rab-11) (24KG)
Length = 216
Score = 218 bits (554), Expect = 1e-56
Identities = 112/209 (53%), Positives = 144/209 (68%)
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
D+E DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA +I+V K IKAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYDI + +YENV WL ELR+ ++V++LVGN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
KSDL R V +E + FAE GL F+ETSAL + NVE F ++T+I I Q+ + +
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDR 184
Query: 187 VDEKPINVFSGKEIHLVDEVTATKQATCC 215
+ + IH+ + CC
Sbjct: 185 RENDMSPSNNVVPIHVPPTTENKPKVQCC 213
>R11A_RABIT (P62493) Ras-related protein Rab-11A (Rab-11)
Length = 216
Score = 218 bits (554), Expect = 1e-56
Identities = 112/209 (53%), Positives = 144/209 (68%)
Query: 7 DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
D+E DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA +I+V K IKAQI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 67 WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
WDTAGQER+RAITS+YYRGA+GA++VYDI + +YENV WL ELR+ ++V++LVGN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
KSDL R V +E + FAE GL F+ETSAL + NVE F ++T+I I Q+ + +
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDR 184
Query: 187 VDEKPINVFSGKEIHLVDEVTATKQATCC 215
+ + IH+ + CC
Sbjct: 185 RENDMSPSNNVVPIHVPPTTENKPKVQCC 213
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.135 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,768,052
Number of Sequences: 164201
Number of extensions: 947919
Number of successful extensions: 4669
Number of sequences better than 10.0: 693
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 3483
Number of HSP's gapped (non-prelim): 708
length of query: 217
length of database: 59,974,054
effective HSP length: 106
effective length of query: 111
effective length of database: 42,568,748
effective search space: 4725131028
effective search space used: 4725131028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0042.10