BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0039.8
         (415 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

P200_MYCGE (Q49429) Protein P200                                       33  1.3
Y2F4_ENCCU (Q8SW86) Hypothetical protein ECU02_1540                    32  3.9
Y110_ENCCU (Q8ST94) Hypothetical protein ECU01_0100/ECU01_1510/E...    32  3.9
METE_BRAJA (Q9AMV8) 5-methyltetrahydropteroyltriglutamate--homoc...    31  5.1
ALC_STRCO (Q9RKU4) Putative allantoicase (EC 3.5.3.4) (Allantoat...    31  5.1
YN50_YEAST (P42844) Hypothetical 23.5 kDa protein in RFA2-STB1 i...    30  8.7

>P200_MYCGE (Q49429) Protein P200
          Length = 1616

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 23/69 (33%), Positives = 34/69 (48%), Gaps = 4/69 (5%)

Query: 10   DIYDVIIDDIMNDTTIEDMMQEEMEFYQQHANTVRPKRTRKVIKRDREAGNERLWKDYFS 69
            +I    ++ I + T +ED+  EE  F     N V+PK T   I  D     + L ++  S
Sbjct: 978  EIVTAEVEQIFDGTKLEDLKLEEANFDNVENNEVQPKETEAEITFDE---TKELQQETSS 1034

Query: 70   ENPVYTEEL 78
            E P+ TEEL
Sbjct: 1035 E-PLSTEEL 1042


>Y2F4_ENCCU (Q8SW86) Hypothetical protein ECU02_1540
          Length = 616

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 13/60 (21%), Positives = 32/60 (52%)

Query: 7   ADLDIYDVIIDDIMNDTTIEDMMQEEMEFYQQHANTVRPKRTRKVIKRDREAGNERLWKD 66
           A++ + +  +       +++   + +   Y+ H+  +R KR+ + IKR+ + G+E  WK+
Sbjct: 396 AEVPLVETAVGGARRKKSLKGKRKGDGHHYKIHSRVLRWKRSAEKIKRELDKGSEERWKN 455


>Y110_ENCCU (Q8ST94) Hypothetical protein
           ECU01_0100/ECU01_1510/ECU08_0030
          Length = 619

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 13/60 (21%), Positives = 32/60 (52%)

Query: 7   ADLDIYDVIIDDIMNDTTIEDMMQEEMEFYQQHANTVRPKRTRKVIKRDREAGNERLWKD 66
           A++ + +  +       +++   + +   Y+ H+  +R KR+ + IKR+ + G+E  WK+
Sbjct: 399 AEVPLVETAVGGARRKKSLKGKRKGDGHHYKIHSRVLRWKRSAEKIKRELDKGSEERWKN 458


>METE_BRAJA (Q9AMV8)
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 781

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 24/97 (24%), Positives = 41/97 (41%), Gaps = 3/97 (3%)

Query: 105 LMSVDEVGRQGLSPLQKCTAVIRMLVYGSPADSVDEYVRIGESTAIECLNFFVEGVCAVF 164
           + ++D+  RQ  +P  + + + R   +G PA          ++TA+   N          
Sbjct: 418 MRAIDQTMRQRATPFARRSEIQRER-FGLPAFPTTTIGSFPQTTAVR--NARAAHARGAM 474

Query: 165 GETYLRRPNQEDITRLLQWGESRGFPVAWKGQFTRGD 201
            E    R  +E+I R ++W E  G  V   G+F R D
Sbjct: 475 SEEQYDRFLKEEIARAVRWQEDIGLDVLVHGEFERND 511


>ALC_STRCO (Q9RKU4) Putative allantoicase (EC 3.5.3.4) (Allantoate
           amidinohydrolase)
          Length = 376

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 23/71 (32%), Positives = 35/71 (48%), Gaps = 12/71 (16%)

Query: 2   DPNNMADLDIYDVIIDDIMNDTTIEDMMQEEMEFYQQHANTVRPKRTRKV-----IKRDR 56
           DP  +A L  +DV+   + N   +ED       FY    NT++P R+RK+      +R R
Sbjct: 211 DPAWLAALGTFDVVA--LENGGQVEDASNL---FYSPATNTIQPGRSRKMDDGWETRRRR 265

Query: 57  EAGNERLWKDY 67
           + GN+  W  Y
Sbjct: 266 DKGND--WIQY 274


>YN50_YEAST (P42844) Hypothetical 23.5 kDa protein in RFA2-STB1
           intergenic region
          Length = 205

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 17/63 (26%), Positives = 31/63 (48%), Gaps = 8/63 (12%)

Query: 305 VERAFNVLQSRFAIVRGPSRFWHPNEMKSI--------MYACIILHNMIVEDERNTYRGS 356
           + R   +LQS+  I R  +R W P    ++        ++  II HN + +D++  + GS
Sbjct: 33  IPRTRTLLQSKIPITRYFARCWAPRVRYNVCRTLPAAALHTNIIAHNEVKKDDKKVHLGS 92

Query: 357 ARV 359
            +V
Sbjct: 93  FKV 95


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,532,225
Number of Sequences: 164201
Number of extensions: 2070053
Number of successful extensions: 4485
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4481
Number of HSP's gapped (non-prelim): 8
length of query: 415
length of database: 59,974,054
effective HSP length: 113
effective length of query: 302
effective length of database: 41,419,341
effective search space: 12508640982
effective search space used: 12508640982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)