BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0039.6
(578 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RUB2_ARATH (Q8RUC6) Ubiquitin-related protein 2 precursor (AtRUB2) 51 9e-06
RUB1_ARATH (Q9SHE7) Ubiquitin-related protein 1 precursor (AtRUB1) 51 9e-06
UBIQ_STRPU (P23398) Ubiquitin 48 6e-05
UBIQ_ENCCU (Q8SWD4) Ubiquitin 48 6e-05
UBIQ_TRYCR (P08565) Ubiquitin 47 1e-04
UBIQ_EUPEU (P23324) Ubiquitin 47 1e-04
UBIQ_CHLRE (P14624) Ubiquitin 47 1e-04
UBIQ_AGLNE (P42740) Ubiquitin 47 1e-04
UBIQ_XENLA (P62972) Ubiquitin 47 1e-04
UBIQ_SPOFR (P68195) Ubiquitin 47 1e-04
UBIQ_SOYBN (P03993) Ubiquitin 47 1e-04
UBIQ_RAT (P62989) Ubiquitin 47 1e-04
UBIQ_RABIT (P62975) Ubiquitin 47 1e-04
UBIQ_PONPY (Q867C4) Ubiquitin 47 1e-04
UBIQ_PLUXY (P68201) Ubiquitin 47 1e-04
UBIQ_PIG (P62974) Ubiquitin 47 1e-04
UBIQ_PHYIN (P22589) Ubiquitin 47 1e-04
UBIQ_PANTR (Q867C3) Ubiquitin 47 1e-04
UBIQ_OPHHA (P68204) Ubiquitin 47 1e-04
UBIQ_MOUSE (P62991) Ubiquitin 47 1e-04
>RUB2_ARATH (Q8RUC6) Ubiquitin-related protein 2 precursor (AtRUB2)
Length = 78
Score = 50.8 bits (120), Expect = 9e-06
Identities = 27/68 (39%), Positives = 43/68 (62%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + I TD+I +K R++ +G +Q+L++ GK+LA DK +DY + G+
Sbjct: 7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDK-TAKDYAIEGGS 65
Query: 94 VLHLVLRL 101
VLHLVL L
Sbjct: 66 VLHLVLAL 73
>RUB1_ARATH (Q9SHE7) Ubiquitin-related protein 1 precursor (AtRUB1)
Length = 80
Score = 50.8 bits (120), Expect = 9e-06
Identities = 27/68 (39%), Positives = 43/68 (62%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + I TD+I +K R++ +G +Q+L++ GK+LA DK +DY + G+
Sbjct: 7 TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDK-TAKDYNIEGGS 65
Query: 94 VLHLVLRL 101
VLHLVL L
Sbjct: 66 VLHLVLAL 73
>UBIQ_STRPU (P23398) Ubiquitin
Length = 76
Score = 48.1 bits (113), Expect = 6e-05
Identities = 25/68 (36%), Positives = 41/68 (59%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +DSI ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_ENCCU (Q8SWD4) Ubiquitin
Length = 77
Score = 48.1 bits (113), Expect = 6e-05
Identities = 25/68 (36%), Positives = 41/68 (59%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +DSI ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_TRYCR (P08565) Ubiquitin
Length = 76
Score = 47.4 bits (111), Expect = 1e-04
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_EUPEU (P23324) Ubiquitin
Length = 76
Score = 47.4 bits (111), Expect = 1e-04
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + ++D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_CHLRE (P14624) Ubiquitin
Length = 76
Score = 47.4 bits (111), Expect = 1e-04
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_AGLNE (P42740) Ubiquitin
Length = 76
Score = 47.4 bits (111), Expect = 1e-04
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_XENLA (P62972) Ubiquitin
Length = 76
Score = 47.0 bits (110), Expect = 1e-04
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_SPOFR (P68195) Ubiquitin
Length = 76
Score = 47.0 bits (110), Expect = 1e-04
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_SOYBN (P03993) Ubiquitin
Length = 76
Score = 47.0 bits (110), Expect = 1e-04
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_RAT (P62989) Ubiquitin
Length = 76
Score = 47.0 bits (110), Expect = 1e-04
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_RABIT (P62975) Ubiquitin
Length = 76
Score = 47.0 bits (110), Expect = 1e-04
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_PONPY (Q867C4) Ubiquitin
Length = 76
Score = 47.0 bits (110), Expect = 1e-04
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_PLUXY (P68201) Ubiquitin
Length = 76
Score = 47.0 bits (110), Expect = 1e-04
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_PIG (P62974) Ubiquitin
Length = 76
Score = 47.0 bits (110), Expect = 1e-04
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_PHYIN (P22589) Ubiquitin
Length = 76
Score = 47.0 bits (110), Expect = 1e-04
Identities = 25/68 (36%), Positives = 41/68 (59%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +DSI ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_PANTR (Q867C3) Ubiquitin
Length = 76
Score = 47.0 bits (110), Expect = 1e-04
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_OPHHA (P68204) Ubiquitin
Length = 76
Score = 47.0 bits (110), Expect = 1e-04
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
>UBIQ_MOUSE (P62991) Ubiquitin
Length = 76
Score = 47.0 bits (110), Expect = 1e-04
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 34 TVGGSVVPMHIMETDSIASMKLRIQTFKGFFVRKQKLVFEGKELARDKLCVRDYGVSDGN 93
T+ G + + + +D+I ++K +IQ +G +Q+L+F GK+L D + DY + +
Sbjct: 7 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKES 65
Query: 94 VLHLVLRL 101
LHLVLRL
Sbjct: 66 TLHLVLRL 73
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,829,158
Number of Sequences: 164201
Number of extensions: 3199227
Number of successful extensions: 7683
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 7558
Number of HSP's gapped (non-prelim): 83
length of query: 578
length of database: 59,974,054
effective HSP length: 116
effective length of query: 462
effective length of database: 40,926,738
effective search space: 18908152956
effective search space used: 18908152956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)
Lotus: description of TM0039.6