BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0033b.8
(1310 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 413 e-114
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 336 2e-91
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 195 8e-49
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 174 2e-42
YMU0_YEAST (Q04670) Transposon Ty1 protein B 120 2e-26
YME4_YEAST (Q04711) Transposon Ty1 protein B 117 3e-25
YMD9_YEAST (Q03434) Transposon Ty1 protein B 115 6e-25
YJZ7_YEAST (P47098) Transposon Ty1 protein B 114 2e-24
YMT5_YEAST (Q04214) Transposon Ty1 protein B 112 5e-24
YJZ9_YEAST (P47100) Transposon Ty1 protein B 112 7e-24
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 112 7e-24
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 111 1e-23
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 110 2e-23
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 102 7e-21
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 44 0.002
MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia p... 35 1.0
TF_BOVIN (P30931) Tissue factor precursor (TF) (Coagulation fact... 35 1.8
RS16_SYNPX (Q7TTU5) 30S ribosomal protein S16 33 6.7
UPL1_ARATH (Q8GY23) E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-... 32 8.7
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 413 bits (1061), Expect = e-114
Identities = 270/763 (35%), Positives = 399/763 (51%), Gaps = 33/763 (4%)
Query: 554 PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQIL 613
PQ N + ER ++ ++ R++L A LP +FW AV A YLINR P+ L + P ++
Sbjct: 579 PQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVW 638
Query: 614 YNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYDLKSRVISI 673
N ++LK+FG F R K D ++ CIF+G+ + G+ +D + +
Sbjct: 639 TNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIR 698
Query: 674 SRNVTFHEHNPFKPLD-SDLTPTQAFP--TTLPPIFDDDIPVPATVQAQEPPVNNQNQVI 730
SR+V F E D S+ P T+P ++ P + ++ V+ Q +
Sbjct: 699 SRDVVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNN----PTSAESTTDEVSEQGEQP 754
Query: 731 APRTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYDHLNPKYQSFVMN 790
Q + + H T P+ S +V S + + +Y +
Sbjct: 755 GEVIEQGEQLDEGVEEVEHPTQGEEQHQPLRRSER------PRVESRRYPSTEY----VL 804
Query: 791 ISSSLEPTRFSEAVKH---ECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVK 847
IS EP E + H KAM +E+E+L++N T+ LV+ P +P+ CKWV+K+K
Sbjct: 805 ISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLK 864
Query: 848 YKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVD 907
D + RYKARLVVKG+ Q +G+DF + FSPV KMT++R IL+L AS + QLDV
Sbjct: 865 KDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVK 924
Query: 908 NAFLHASLDEQIYMTIPQGL-VCNKANQVCLLQKSLYGLKQASRQWFNTLSASLKKLGYK 966
AFLH L+E+IYM P+G V K + VC L KSLYGLKQA RQW+ + +K Y
Sbjct: 925 TAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYL 984
Query: 967 QSNADHTLYIKA-SSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYF 1025
++ +D +Y K S +F LLLY DD+L+ G D I +K L F +KDLG A+
Sbjct: 985 KTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQI 1044
Query: 1026 LGLEIARSTSG--IVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNI-GTPLTDIG 1082
LG++I R + + L+Q KY +++ +KPVSTP+ KL + T + + G
Sbjct: 1045 LGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKG 1104
Query: 1083 S-----YRRLVGRLLY-LNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGS 1136
+ Y VG L+Y + TRPDI AV +S+FL P H +A +L+YL+G+ G
Sbjct: 1105 NMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGD 1164
Query: 1137 GLFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESE 1196
L + S L ++D+D AG ID RKS TGY ISW+SK Q + S+ E+E
Sbjct: 1165 CLCF-GGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAE 1223
Query: 1197 YRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHI 1256
Y A T E+ WL LQ+L Q ++ D+QSA+ ++ N YH RTKHI++ H
Sbjct: 1224 YIAATETGKEMIWLKRFLQELGLHQ-KEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHW 1282
Query: 1257 VREKLQQGLVHLLPISTTLQTADVFTKSLTPAPFKTCISKLGM 1299
+RE + + +L IST AD+ TK + F+ C +GM
Sbjct: 1283 IREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 336 bits (862), Expect = 2e-91
Identities = 199/537 (37%), Positives = 302/537 (56%), Gaps = 15/537 (2%)
Query: 775 LSYDHLNPKYQSFVMNISSSLE--PTRFSEAVKHE---CWRKAMDQEIEALERNQTWILV 829
+SY+ + V+N + P F E + W +A++ E+ A + N TW +
Sbjct: 867 ISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTIT 926
Query: 830 DKPPDSKPIGCKWVYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRV 889
+P + + +WV+ VKY + G+ RYKARLV +G+TQ +D+++TF+PVA++++ R
Sbjct: 927 KRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRF 986
Query: 890 ILALCASQ*WHLHQLDVDNAFLHASLDEQIYMTIPQGLVCNKANQVCLLQKSLYGLKQAS 949
IL+L +HQ+DV AFL+ +L E+IYM +PQG+ CN N VC L K++YGLKQA+
Sbjct: 987 ILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSDN-VCKLNKAIYGLKQAA 1045
Query: 950 RQWFNTLSASLKKLGYKQSNADHTLYI--KASSGSFTALLLYADDVLLAGNDMHEIQLVK 1007
R WF +LK+ + S+ D +YI K + +LLY DDV++A DM + K
Sbjct: 1046 RCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFK 1105
Query: 1008 SSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNS 1067
L ++FR+ DL E K+F+G+ I I L+Q Y +++S VSTP+ +
Sbjct: 1106 RYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPS- 1164
Query: 1068 QKLGTNIGTPLTDIGS-YRRLVGRLLYLN-TTRPDITFAVNQLSQFLSAPTDIHEQAAHR 1125
K+ + D + R L+G L+Y+ TRPD+T AVN LS++ S Q R
Sbjct: 1165 -KINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKR 1223
Query: 1126 VLKYLKGSPGSGLFYPASSS--TTLTAFSDSDWAGCIDTRKSITGYCLFLGD-SLISWRS 1182
VL+YLKG+ L + + + + + DSDWAG RKS TGY + D +LI W +
Sbjct: 1224 VLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNT 1283
Query: 1183 KKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPS 1242
K+Q++ + SS E+EY A+ V E WL +LL +N P ++ DNQ + IA+NPS
Sbjct: 1284 KRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPS 1343
Query: 1243 YHERTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTPAPFKTCISKLGM 1299
H+R KHI++ H RE++Q ++ L I T Q AD+FTK L A F KLG+
Sbjct: 1344 CHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400
Score = 79.0 bits (193), Expect = 8e-14
Identities = 44/132 (33%), Positives = 76/132 (57%), Gaps = 5/132 (3%)
Query: 554 PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVL--DNKCPFQ 611
PQ N + ER + + AR ++ A L +FW AV A YLINR+P+ L +K P++
Sbjct: 579 PQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYE 638
Query: 612 ILYNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYDLKSRVI 671
+ +N P + +L++FG +V + + + KFD ++ K IF+G++P+ GF +D +
Sbjct: 639 MWHNKKPYLKHLRVFGATVYVH-IKNKQGKFDDKSFKSIFVGYEPN--GFKLWDAVNEKF 695
Query: 672 SISRNVTFHEHN 683
++R+V E N
Sbjct: 696 IVARDVVVDETN 707
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 195 bits (495), Expect = 8e-49
Identities = 102/225 (45%), Positives = 143/225 (63%), Gaps = 3/225 (1%)
Query: 986 LLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYA 1045
LLLY DD+LL G+ + ++ L F +KDLG YFLG++I SG+ L+Q KYA
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 1046 LQLISDSGHLASKPVSTPMDNSQKLGTNIGTP-LTDIGSYRRLVGRLLYLNTTRPDITFA 1104
Q+++++G L KP+STP+ KL +++ T D +R +VG L YL TRPDI++A
Sbjct: 63 EQILNNAGMLDCKPMSTPLP--LKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120
Query: 1105 VNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSSTTLTAFSDSDWAGCIDTRK 1164
VN + Q + PT RVL+Y+KG+ GL+ +S + AF DSDWAGC TR+
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRR 180
Query: 1165 SITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQW 1209
S TG+C FLG ++ISW +K+Q T SRSS E+EYRA+A T E+ W
Sbjct: 181 STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 174 bits (440), Expect = 2e-42
Identities = 112/308 (36%), Positives = 167/308 (53%), Gaps = 4/308 (1%)
Query: 904 LDVDNAFLHASLDEQIYMTIPQGLVCNK-ANQVCLLQKSLYGLKQASRQWFNTLSASLKK 962
+DVD AFL++++DE IY+ P G V + + V L +YGLKQA W ++ +LKK
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 963 LGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEA 1022
+G+ + +H LY +++S + +Y DD+L+A VK L + +KDLG+
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1023 KYFLGLEIARSTSG-IVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDI 1081
FLGL I +ST+G I L+ + Y + S+S K TP+ NS+ L L DI
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180
Query: 1082 GSYRRLVGRLLY-LNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFY 1140
Y+ +VG+LL+ NT RPDI++ V+ LS+FL P IH ++A RVL+YL + L Y
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240
Query: 1141 PASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKK-QSTASRSSCESEYRA 1199
+ S LT + D+ D S GY L + ++W SKK + S E+EY
Sbjct: 241 RSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYIT 300
Query: 1200 MATTVCEI 1207
+ TV EI
Sbjct: 301 ASETVMEI 308
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 120 bits (301), Expect = 2e-26
Identities = 153/671 (22%), Positives = 282/671 (41%), Gaps = 71/671 (10%)
Query: 670 VISISRNVTFHEHNPFKPLDSDLTPTQAFPTTLPPIFDDDIPVPATVQAQEPPVNNQNQ- 728
++ I T E N + + +DL P P P F D + PP+N++
Sbjct: 682 IVPIKTPTTVSEQNTEESIIADL-PLPDLPPESPTEFPDPFK-------ELPPINSRQTN 733
Query: 729 -----VIAPRTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYDHLNPK 783
+ I L+D + S T + + P SK + K
Sbjct: 734 SSLGGIGDSNAYTTINSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVK 793
Query: 784 YQSFVMNISSSLEPTRFSEAVKH-------ECWRKAMDQEIEALERNQTWILVDKPPDSK 836
+ I ++L R+ EA+ + E + +A +E+ L + +TW D+ D K
Sbjct: 794 AVKSIKPIRTTL---RYDEAITYNKDIKEKEKYIQAYHKEVNQLLKMKTWD-TDRYYDRK 849
Query: 837 PIGCKWVYKVKY----KQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTT-----L 887
I K V + K+DG+ +KAR V +G + DT+ P + T L
Sbjct: 850 EIDPKRVINSMFIFNRKRDGT---HKARFVARG-----DIQHPDTYDPGMQSNTVHHYAL 901
Query: 888 RVILALCASQ*WHLHQLDVDNAFLHASLDEQIYMTIPQGLVCNKANQVCLLQKSLYGLKQ 947
L+L +++ QLD+ +A+L+A + E++Y+ P L N +++ L+KSLYGLKQ
Sbjct: 902 MTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN--DKLIRLKKSLYGLKQ 959
Query: 948 ASRQWFNTLSASL-KKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLV 1006
+ W+ T+ + L K+ G ++ ++ S + L+ DD++L D++ + +
Sbjct: 960 SGANWYETIKSYLIKQCGMEEVRGWSCVF----KNSQVTICLFVDDMILFSKDLNANKKI 1015
Query: 1007 KSSLHDQF--RIKDLGEAKY-----FLGLEIARSTSGIV-------LNQRKYALQL-ISD 1051
++L Q+ +I +LGE+ LGLEI + L ++ L + ++
Sbjct: 1016 ITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNP 1075
Query: 1052 SGHLASKPVSTPMD-NSQKLGTNIGTPLTDIGSYRRLVGRLLYLNTT-RPDITFAVNQLS 1109
G S P + + Q+L + ++L+G Y+ R D+ + +N L+
Sbjct: 1076 KGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLA 1135
Query: 1110 QFLSAPTDIHEQAAHRVLKYLKGSPGSGLFY----PASSSTTLTAFSDSDWAGCIDTRKS 1165
Q + P+ + +++++ + L + P + L SD+ + G KS
Sbjct: 1136 QHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKS 1194
Query: 1166 ITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPT 1225
G L +I +S K S S+ E+E A++ +V + L +L+Q+LN+ +
Sbjct: 1195 QIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKPITKG 1254
Query: 1226 SMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSL 1285
+ + I N R + +R+++ +H+ I T ADV TK L
Sbjct: 1255 LLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPL 1314
Query: 1286 TPAPFKTCISK 1296
FK +K
Sbjct: 1315 PIKTFKLLTNK 1325
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 117 bits (292), Expect = 3e-25
Identities = 153/666 (22%), Positives = 275/666 (40%), Gaps = 61/666 (9%)
Query: 670 VISISRNVTFHEHNPFKPLDSDLTPTQAFPTTLPPIFDDDIPVPATVQAQEPPVNNQNQ- 728
++ I T E N + + +DL P P P F D + PP+N+
Sbjct: 682 IVPIKTPTTVSEQNTEESIIADL-PLPDLPPESPTEFPDPFK-------ELPPINSHQTN 733
Query: 729 -----VIAPRTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYDHLNPK 783
+ I L+D + S T + + P SK + K
Sbjct: 734 SSLGGIGDSNAYTTINSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVK 793
Query: 784 YQSFVMNISSSLEPTRFSEAVKH-------ECWRKAMDQEIEALERNQTWILVDKPPDSK 836
+ I ++L R+ EA+ + E + +A +E+ L + TW DK D K
Sbjct: 794 AVKSIKPIRTTL---RYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMNTWD-TDKYYDRK 849
Query: 837 PIGCKWVYKVKY----KQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILA 892
I K V + K+DG+ +KAR V +G Q S L L+
Sbjct: 850 EIDPKRVINSMFIFNRKRDGT---HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLS 906
Query: 893 LCASQ*WHLHQLDVDNAFLHASLDEQIYMTIPQGLVCNKANQVCLLQKSLYGLKQASRQW 952
L +++ QLD+ +A+L+A + E++Y+ P L N +++ L+KSLYGLKQ+ W
Sbjct: 907 LALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN--DKLIRLKKSLYGLKQSGANW 964
Query: 953 FNTLSASL-KKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLH 1011
+ T+ + L K+ G ++ ++ S + L+ DD++L D++ + + ++L
Sbjct: 965 YETIKSYLIKQCGMEEVRGWSCVF----KNSQVTICLFVDDMILFSKDLNANKKIITTLK 1020
Query: 1012 DQF--RIKDLGEAKY-----FLGLEIARSTSGIV-------LNQRKYALQL-ISDSGHLA 1056
Q+ +I +LGE+ LGLEI + L ++ L + ++ G
Sbjct: 1021 KQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKL 1080
Query: 1057 SKPVSTPMDNSQ-KLGTNIGTPLTDIGSYRRLVGRLLYLNTT-RPDITFAVNQLSQFLSA 1114
S P + Q +L + + ++L+G Y+ R D+ + +N L+Q +
Sbjct: 1081 SAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILF 1140
Query: 1115 PTDIHEQAAHRVLKYLKGSPGSGLFY----PASSSTTLTAFSDSDWAGCIDTRKSITGYC 1170
P+ + +++++ + L + P L A SD+ + G KS G
Sbjct: 1141 PSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNI 1199
Query: 1171 LFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRD 1230
L +I +S K S S+ E+E A++ +V + L +L+Q+LN+ + +
Sbjct: 1200 YLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQELNKKPITKGLLTDS 1259
Query: 1231 NQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTPAPF 1290
+ I N R + +R+++ +H+ I T ADV TK L F
Sbjct: 1260 KSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1319
Query: 1291 KTCISK 1296
K +K
Sbjct: 1320 KLLTNK 1325
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 115 bits (289), Expect = 6e-25
Identities = 153/667 (22%), Positives = 282/667 (41%), Gaps = 63/667 (9%)
Query: 670 VISISRNVTFHEHNPFKPLDSDLTPTQAFPTTLPPIFDDDIPVPATVQAQEPPVNNQNQ- 728
++ I T E N + + +DL P P P F D + PP+N+
Sbjct: 682 IVPIKTPTTVSEQNTEESIIADL-PLPDLPPESPTEFPDPFK-------ELPPINSHQTN 733
Query: 729 -----VIAPRTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYDHLNPK 783
+ I L+D + S T + + P SK + K
Sbjct: 734 SSLGGIGDSNAYTTINSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVK 793
Query: 784 YQSFVMNISSSLEPTRFSEAVKH-------ECWRKAMDQEIEALERNQTWILVDKPPDSK 836
+ I ++L R+ EA+ + E + +A +E+ L + +TW D+ D K
Sbjct: 794 AVKSIKPIRTTL---RYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWD-TDEYYDRK 849
Query: 837 PIGCKWVYKVKY----KQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILA 892
I K V + K+DG+ +KAR V +G Q S L L+
Sbjct: 850 EIDPKRVINSMFIFNKKRDGT---HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLS 906
Query: 893 LCASQ*WHLHQLDVDNAFLHASLDEQIYMTIPQGLVCNKANQVCLLQKSLYGLKQASRQW 952
L +++ QLD+ +A+L+A + E++Y+ P L N +++ L+KSLYGLKQ+ W
Sbjct: 907 LALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN--DKLIRLKKSLYGLKQSGANW 964
Query: 953 FNTLSASL-KKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLH 1011
+ T+ + L K+ G ++ ++ S + L+ DD++L D++ + + ++L
Sbjct: 965 YETIKSYLIKQCGMEEVRGWSCVF----KNSQVTICLFVDDMILFSKDLNANKKIITTLK 1020
Query: 1012 DQF--RIKDLGEAKY-----FLGLEIARSTSGIV-------LNQRKYALQL-ISDSGHLA 1056
Q+ +I +LGE+ LGLEI + L ++ L + ++ G
Sbjct: 1021 KQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKL 1080
Query: 1057 SKPVSTPMDNSQ-KLGTNIGTPLTDIGSYRRLVGRLLYLNTT-RPDITFAVNQLSQFLSA 1114
S P + Q +L + + ++L+G Y+ R D+ + +N L+Q +
Sbjct: 1081 SAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILF 1140
Query: 1115 PTDIHEQAAHRVLKYLKGSPGSGLFY----PASSSTTLTAFSDSDWAGCIDTRKSITGYC 1170
P+ + +++++ + L + P L A SD+ + G KS G
Sbjct: 1141 PSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNI 1199
Query: 1171 LFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRD 1230
L +I +S K S S+ E+E A++ +V + L YL+Q+LN+ + + D
Sbjct: 1200 YLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELNKKPII-KGLLTD 1258
Query: 1231 NQSAMHIAHNPSYHE-RTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTPAP 1289
++S + I + + + R + +R+++ +++ I T ADV TK L
Sbjct: 1259 SRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKT 1318
Query: 1290 FKTCISK 1296
FK +K
Sbjct: 1319 FKLLTNK 1325
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 114 bits (284), Expect = 2e-24
Identities = 154/669 (23%), Positives = 285/669 (42%), Gaps = 67/669 (10%)
Query: 670 VISISRNVTFHEHNPFKPLDSDLTPTQAFPTTLPPIFDDDIPVPATVQAQEPPVNNQNQ- 728
++ I T E N + + +DL P P P F D + PP+N+
Sbjct: 1109 IVPIKTPTTVSEQNTEESIIADL-PLPDLPPESPTEFPDPFK-------ELPPINSHQTN 1160
Query: 729 -----VIAPRTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYDHLNPK 783
+ I L+D + S T + + P SK + K
Sbjct: 1161 SSLGGIGDSNAYTTINSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVK 1220
Query: 784 YQSFVMNISSSLEPTRFSEAVKH-------ECWRKAMDQEIEALERNQTWILVDKPPDSK 836
+ I ++L R+ EA+ + E + +A +E+ L + +TW D+ D K
Sbjct: 1221 AVKSIKPIRTTL---RYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWD-TDEYYDRK 1276
Query: 837 PIGCKWVYKVKY----KQDGSIERYKARLVVKGYTQVEGVDFQDTF--SPVAKMTTLRVI 890
I K V + K+DG+ +KAR V +G ++ D DT S L
Sbjct: 1277 EIDPKRVINSMFIFNKKRDGT---HKARFVARG--DIQHPDTYDTGMQSNTVHHYALMTS 1331
Query: 891 LALCASQ*WHLHQLDVDNAFLHASLDEQIYMTIPQGLVCNKANQVCLLQKSLYGLKQASR 950
L+L +++ QLD+ +A+L+A + E++Y+ P L N +++ L+KS YGLKQ+
Sbjct: 1332 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN--DKLIRLKKSHYGLKQSGA 1389
Query: 951 QWFNTLSASL-KKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSS 1009
W+ T+ + L K+ G ++ ++ S + L+ DD++L D++ + + ++
Sbjct: 1390 NWYETIKSYLIKQCGMEEVRGWSCVF----KNSQVTICLFVDDMILFSKDLNANKKIITT 1445
Query: 1010 LHDQF--RIKDLGEAKY-----FLGLEIARSTSGIV-------LNQRKYALQL-ISDSGH 1054
L Q+ +I +LGE+ LGLEI + L ++ L + ++ G
Sbjct: 1446 LKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGR 1505
Query: 1055 LASKPVSTPMDNSQ-KLGTNIGTPLTDIGSYRRLVGRLLYLNTT-RPDITFAVNQLSQFL 1112
S P + Q +L + + ++L+G Y+ R D+ + +N L+Q +
Sbjct: 1506 KLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHI 1565
Query: 1113 SAPTDIHEQAAHRVLKYLKGSPGSGLFY----PASSSTTLTAFSDSDWAGCIDTRKSITG 1168
P+ + +++++ + L + P L A SD+ + G KS G
Sbjct: 1566 LFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIG 1624
Query: 1169 YCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMF 1228
L +I +S K S S+ E+E A++ +V + L YL+Q+LN+ + +
Sbjct: 1625 NIFLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELNKKPII-KGLL 1683
Query: 1229 RDNQSAMHIAHNPSYHE-RTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTP 1287
D++S + I + + + R + +R+++ +++ I T ADV TK L
Sbjct: 1684 TDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPI 1743
Query: 1288 APFKTCISK 1296
FK +K
Sbjct: 1744 KTFKLLTNK 1752
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 112 bits (281), Expect = 5e-24
Identities = 126/531 (23%), Positives = 232/531 (42%), Gaps = 44/531 (8%)
Query: 799 RFSEAVKH-------ECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVKY--- 848
R+ EA+ + E + +A +E+ L + +TW DK D K I K V +
Sbjct: 806 RYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWD-TDKYYDRKEIDPKRVINSMFIFN 864
Query: 849 -KQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVD 907
K+DG+ +KAR V +G Q S L L+L +++ QLD+
Sbjct: 865 RKRDGT---HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDIS 921
Query: 908 NAFLHASLDEQIYMTIPQGLVCNKANQVCLLQKSLYGLKQASRQWFNTLSASL-KKLGYK 966
+A+L+A + E++Y+ P L N +++ L+KSLYGLKQ+ W+ T+ + L K+ G +
Sbjct: 922 SAYLYADIKEELYIRPPPHLGMN--DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGME 979
Query: 967 QSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQF--RIKDLGEAKY 1024
+ ++ S + L+ DD++L +++ + + L Q+ +I +LGE+
Sbjct: 980 EVRGWSCVF----ENSQVTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDE 1035
Query: 1025 -----FLGLEIARSTSGIV-------LNQRKYALQL-ISDSGHLASKPVSTPMD-NSQKL 1070
LGLEI + L ++ L + ++ G S P + + Q+L
Sbjct: 1036 EIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQEL 1095
Query: 1071 GTNIGTPLTDIGSYRRLVGRLLYLNTT-RPDITFAVNQLSQFLSAPTDIHEQAAHRVLKY 1129
+ ++L+G Y+ R D+ + +N L+Q + P+ + ++++
Sbjct: 1096 ELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQF 1155
Query: 1130 LKGSPGSGLFY----PASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQ 1185
+ + L + P + L SD+ + G KS G L +I +S K
Sbjct: 1156 IWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKA 1214
Query: 1186 STASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHE 1245
S S+ E+E A++ +V + L YL+Q+L++ + + + I N
Sbjct: 1215 SLTCTSTTEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISIIISNNEEKF 1274
Query: 1246 RTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTPAPFKTCISK 1296
R + +R+++ +H+ I T ADV TK L FK +K
Sbjct: 1275 RNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLLTNK 1325
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 112 bits (280), Expect = 7e-24
Identities = 149/666 (22%), Positives = 275/666 (40%), Gaps = 61/666 (9%)
Query: 670 VISISRNVTFHEHNPFKPLDSDLTPTQAFPTTLPPIFDDDIPVPATVQAQEPPVNNQNQ- 728
++ I T E N + + +DL P P P F D + PP+N++
Sbjct: 1109 IVPIKTPTTVSEQNTEESIIADL-PLPDLPPESPTEFPDPFK-------ELPPINSRQTN 1160
Query: 729 -----VIAPRTSQRIRKPPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYDHLNPK 783
+ I L+D + S T + + P SK + K
Sbjct: 1161 SSLGGIGDSNAYTTINSKKRSLEDNETEIKVSRDTWNTKNMRSLEPPRSKKRIHLIAAVK 1220
Query: 784 YQSFVMNISSSLEPTRFSEAVKH-------ECWRKAMDQEIEALERNQTWILVDKPPDSK 836
+ I ++L R+ EA+ + E + +A +E+ L + +TW D+ D K
Sbjct: 1221 AVKSIKPIRTTL---RYDEAITYNKDIKEKEKYIEAYHKEVNQLLKMKTWD-TDEYYDRK 1276
Query: 837 PIGCKWVYKVKY----KQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILA 892
I K V + K+DG+ +KAR V +G Q S L L+
Sbjct: 1277 EIDPKRVINSMFIFNKKRDGT---HKARFVARGDIQHPDTYDSGMQSNTVHHYALMTSLS 1333
Query: 893 LCASQ*WHLHQLDVDNAFLHASLDEQIYMTIPQGLVCNKANQVCLLQKSLYGLKQASRQW 952
L +++ QLD+ +A+L+A + E++Y+ P L N +++ L+KSLYGLKQ+ W
Sbjct: 1334 LALDNNYYITQLDISSAYLYADIKEELYIRPPPHLGMN--DKLIRLKKSLYGLKQSGANW 1391
Query: 953 FNTLSASL-KKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLH 1011
+ T+ + L ++ G ++ ++ S + L+ DD++L +++ + + L
Sbjct: 1392 YETIKSYLIQQCGMEEVRGWSCVF----KNSQVTICLFVDDMVLFSKNLNSNKRIIEKLK 1447
Query: 1012 DQF--RIKDLGEAKY-----FLGLEIARSTSGIV-------LNQRKYALQL-ISDSGHLA 1056
Q+ +I +LGE+ LGLEI + L ++ L + ++ G
Sbjct: 1448 MQYDTKIINLGESDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKL 1507
Query: 1057 SKPVSTPMD-NSQKLGTNIGTPLTDIGSYRRLVGRLLYLNTT-RPDITFAVNQLSQFLSA 1114
S P + + Q+L + ++L+G Y+ R D+ + +N L+Q +
Sbjct: 1508 SAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILF 1567
Query: 1115 PTDIHEQAAHRVLKYLKGSPGSGLFY----PASSSTTLTAFSDSDWAGCIDTRKSITGYC 1170
P+ + +++++ + L + P + L SD+ + G KS G
Sbjct: 1568 PSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNI 1626
Query: 1171 LFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRD 1230
L +I +S K S S+ E+E A++ +V + L YL+Q+L++ + +
Sbjct: 1627 YLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDS 1686
Query: 1231 NQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTPAPF 1290
+ I N R + +R+++ +H+ I T ADV TK L F
Sbjct: 1687 KSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTF 1746
Query: 1291 KTCISK 1296
K +K
Sbjct: 1747 KLLTNK 1752
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 112 bits (280), Expect = 7e-24
Identities = 111/471 (23%), Positives = 210/471 (44%), Gaps = 43/471 (9%)
Query: 857 YKARLVVKGYTQVEGVDFQDTFSPVAKMTT----LRVILALCASQ*WHLHQLDVDNAFLH 912
YKAR+V +G TQ DT+S + + +++ L + ++ + LD+++AFL+
Sbjct: 1337 YKARIVCRGDTQSP-----DTYSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLY 1391
Query: 913 ASLDEQIYMTIPQGLVCNKANQVCLLQKSLYGLKQASRQWFNTLSASLKKLGYKQSNADH 972
A L+E+IY+ P C V L K+LYGLKQ+ ++W + L L +G K ++
Sbjct: 1392 AKLEEEIYIPHPHDRRC-----VVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTP 1446
Query: 973 TLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEA------KYFL 1026
LY A +Y DD ++A ++ + + L F +K G L
Sbjct: 1447 GLYQTEDKNLMIA--VYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDIL 1504
Query: 1027 GLEIARS----------TSGIVLNQRKYALQL----ISDSGHLASKPVSTPMDNSQKLGT 1072
G+++ + S I +KY +L S H+++ + D Q
Sbjct: 1505 GMDLVYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEE 1564
Query: 1073 NIGTPLTDIGSYRRLVGRLLYL-NTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLK 1131
+ + ++L+G L Y+ + R DI FAV ++++ ++ P + +++++YL
Sbjct: 1565 EFRQGVLKL---QQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLV 1621
Query: 1132 GSPGSGLFY--PASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTAS 1189
G+ Y + + A +D+ D + I G L+ G ++ + S K +
Sbjct: 1622 RYKDIGIHYDRDCNKDKKVIAITDASVGSEYDAQSRI-GVILWYGMNIFNVYSNKSTNRC 1680
Query: 1190 RSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKH 1249
SS E+E A+ + + L L++L + M D++ A+ + + K
Sbjct: 1681 VSSTEAELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKF 1740
Query: 1250 IELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTPAPFKTCISKLGMK 1300
+ I++EK+++ + LL I+ AD+ TK ++ + FK I L K
Sbjct: 1741 TWIKTEIIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFKRFIQVLKNK 1791
Score = 36.6 bits (83), Expect = 0.46
Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 6/135 (4%)
Query: 548 HHLC*NPQQNAI---VERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVL 604
HH+ + Q +A ER + +I+ A LL Q++L V FW YAV A + N L
Sbjct: 716 HHILTSTQDHAANGRAERYIRTIITDATTLLRQSNLRVKFWEYAVTSATNIRNYLEHK-S 774
Query: 605 DNKCPFQILYNTVPDITNLKIFGTLCFVSTLTSH-RKKFDPRATKCIFLGFKPDTKGFVT 663
K P + + + P L F + +H KK P I L P++ G+
Sbjct: 775 TGKLPLKAI-SRQPVTVRLMSFLPFGEKGIIWNHNHKKLKPSGLPSIILCKDPNSYGYKF 833
Query: 664 YDLKSRVISISRNVT 678
+ I S N T
Sbjct: 834 FIPSKNKIVTSDNYT 848
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 111 bits (278), Expect = 1e-23
Identities = 124/539 (23%), Positives = 230/539 (42%), Gaps = 60/539 (11%)
Query: 799 RFSEAVKHECWRKAMDQEIEALERNQTWIL------VDKPPDSKPIGCKWVYKVKY---- 848
R+ EA+ + K D+ +EA + + +L +K D I K V +
Sbjct: 1248 RYDEAITYNKDNKEKDRYVEAYHKEISQLLKMNTWDTNKYYDRNDIDPKKVINSMFIFNK 1307
Query: 849 KQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVDN 908
K+DG+ +KAR V +G Q D S L L++ +++ QLD+ +
Sbjct: 1308 KRDGT---HKARFVARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISS 1364
Query: 909 AFLHASLDEQIYMTIPQGLVCNKANQVCLLQKSLYGLKQASRQWFNTLSASLKKLGYKQS 968
A+L+A + E++Y+ P L N +++ L+KSLYGLKQ+ W+ T+ + L Q
Sbjct: 1365 AYLYADIKEELYIRPPPHLGLN--DKLLRLRKSLYGLKQSGANWYETIKSYLINCCDMQE 1422
Query: 969 NADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQF--RIKDLGEAKY-- 1024
+ K S + L+ DD++L D++ + + ++L Q+ +I +LGE+
Sbjct: 1423 VRGWSCVFKNSQ---VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEI 1479
Query: 1025 ---FLGLEIARSTS------------------GIVLNQRKYALQLISDSGHLASKPVSTP 1063
LGLEI S + LN + L+ GH +
Sbjct: 1480 QYDILGLEIKYQRSKYMKLGMEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEI 1539
Query: 1064 MDNSQKLGTNIGTPLTDIGSYRRLVGRLLYLN-TTRPDITFAVNQLSQFLSAPTDIHEQA 1122
++ K + ++L+G Y+ R D+ + +N L+Q + P+
Sbjct: 1540 DEDEYK---------EKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDM 1590
Query: 1123 AHRVLKYLKGSPGSGLFY----PASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLI 1178
+ +++++ + L + P L A SD+ + G KS G L +I
Sbjct: 1591 TYELIQFMWDTRDKQLIWHKNKPTKPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVI 1649
Query: 1179 SWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIA 1238
+S K S S+ E+E A++ + + L +L+Q+LN+ + + D++S + I
Sbjct: 1650 GGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQELNKKPII-KGLLTDSRSTISII 1708
Query: 1239 HNPSYHE-RTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTPAPFKTCISK 1296
+ + + R + +R+++ +++ I T ADV TK L FK +K
Sbjct: 1709 KSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLLTNK 1767
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 110 bits (276), Expect = 2e-23
Identities = 58/132 (43%), Positives = 79/132 (58%), Gaps = 11/132 (8%)
Query: 760 ITSSSTGINYPLSKVLSYDHLNPKYQSFVMNISSSLEPTRFSEAVKHECWRKAMDQEIEA 819
+T S GIN LNPKY S + + EP A+K W +AM +E++A
Sbjct: 2 LTRSKAGIN----------KLNPKY-SLTITTTIKKEPKSVIFALKDPGWCQAMQEELDA 50
Query: 820 LERNQTWILVDKPPDSKPIGCKWVYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFS 879
L RN+TWILV P + +GCKWV+K K DG+++R KARLV KG+ Q EG+ F +T+S
Sbjct: 51 LSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYS 110
Query: 880 PVAKMTTLRVIL 891
PV + T+R IL
Sbjct: 111 PVVRTATIRTIL 122
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 102 bits (254), Expect = 7e-21
Identities = 47/79 (59%), Positives = 59/79 (74%)
Query: 1092 LYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSSTTLTAF 1151
+YL TRPD+TFAVN+LSQF SA QA ++VL Y+KG+ G GLFY A+S L AF
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1152 SDSDWAGCIDTRKSITGYC 1170
+DSDWA C DTR+S+TG+C
Sbjct: 61 ADSDWASCPDTRRSVTGFC 79
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 44.3 bits (103), Expect = 0.002
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 567 VISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQILYNTVPDITNLKIF 626
+I R++L + LP TF + A AV++IN+ P+ ++ P ++ + +VP + L+ F
Sbjct: 5 IIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRF 64
Query: 627 GTLCFVSTLTSHRKKFDPRATK 648
G + ++ K PRA K
Sbjct: 65 GCVAYIH---CDEGKLKPRAKK 83
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia
protein 4 (Trithorax homolog 2)
Length = 2715
Score = 35.4 bits (80), Expect = 1.0
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 668 SRVISISRNVTFHEHNPFKPLDSDLTPTQAFP-TTLPPIFDDDIPVPATVQAQEPPVNNQ 726
SRVI R F + +P KP +++P P TT PP+ + PVP+ +A PP
Sbjct: 537 SRVIKTPRR--FMDEDPPKPPKVEVSPVLRPPITTSPPVPQEPAPVPSPPRAPTPP---S 591
Query: 727 NQVIAPRTSQRIRKPPSY 744
V P + I + P++
Sbjct: 592 TPVPLPEKRRSILREPTF 609
>TF_BOVIN (P30931) Tissue factor precursor (TF) (Coagulation factor
III)
Length = 292
Score = 34.7 bits (78), Expect = 1.8
Identities = 47/174 (27%), Positives = 71/174 (40%), Gaps = 23/174 (13%)
Query: 1034 TSGIVLNQRK-YALQLISDSGHLASKPVSTPMDNSQK----LGTNIGTPLTDIGSYRRLV 1088
T IV N R+ Y +++S +S V P NS + L TN+G P I S+ ++
Sbjct: 92 TDEIVKNVRETYLARVLSYPADTSSSTVEPPFTNSPEFTPYLETNLGQPT--IQSFEQVG 149
Query: 1089 GRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSSTTL 1148
+L N T D V S FLS D+ + + L Y K S ++T
Sbjct: 150 TKL---NVTVQDARTLVRANSAFLSL-RDVFGKDLNYTLYYWKASSTG----KKKATTNT 201
Query: 1149 TAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMAT 1202
F ID K YC + ++S R ++S S C S + ++T
Sbjct: 202 NGF-------LIDVDKG-ENYCFHVQAVILSRRVNQKSPESPIKCTSHEKVLST 247
>RS16_SYNPX (Q7TTU5) 30S ribosomal protein S16
Length = 140
Score = 32.7 bits (73), Expect = 6.7
Identities = 16/46 (34%), Positives = 24/46 (51%)
Query: 1243 YHERTKHIELDCHIVREKLQQGLVHLLPISTTLQTADVFTKSLTPA 1288
Y+ RTK LD +RE+L QG + T L+ + K++ PA
Sbjct: 39 YNPRTKETRLDTEAIRERLGQGAQPTDVVRTLLERGGLIEKTIRPA 84
>UPL1_ARATH (Q8GY23) E3 ubiquitin protein ligase UPL1 (EC 6.3.2.-)
(Ubiquitin-protein ligase 1)
Length = 3684
Score = 32.3 bits (72), Expect = 8.7
Identities = 21/77 (27%), Positives = 34/77 (43%), Gaps = 6/77 (7%)
Query: 646 ATKCIFLGFKPDTKGFVTYDLKSRVISISRNVTFHEHNPFKPLDSDLTPTQAFPTTLPPI 705
+ KC +LG D F+++D + RV + +F+ H FK L + T T+P
Sbjct: 1070 SVKCRYLGKVVDDITFLSFDTRRRVCFTAMVNSFYVHGTFKELLTTFEATSQLLWTVP-- 1127
Query: 706 FDDDIPVPATVQAQEPP 722
+PA+ E P
Sbjct: 1128 ----FSIPASSTENEKP 1140
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.339 0.148 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,692,973
Number of Sequences: 164201
Number of extensions: 5373658
Number of successful extensions: 17660
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17602
Number of HSP's gapped (non-prelim): 26
length of query: 1310
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1188
effective length of database: 39,941,532
effective search space: 47450540016
effective search space used: 47450540016
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0033b.8