BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0033b.5
(88 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RAB5_TOBAC (P29687) Ras-related protein Rab5 72 2e-13
RHN1_NICPL (P31583) Ras-related protein RHN1 68 5e-12
RHA1_ARATH (P31582) Ras-related protein RHA1 64 9e-11
RB2A_RAT (P05712) Ras-related protein Rab-2A 61 4e-10
RB2A_RABIT (Q01971) Ras-related protein Rab-2A 61 4e-10
RB2A_MOUSE (P53994) Ras-related protein Rab-2A 61 4e-10
RB2A_HUMAN (P61019) Ras-related protein Rab-2A 61 4e-10
RB2A_CANFA (P61105) Ras-related protein Rab-2A 61 4e-10
RB14_RAT (P61107) Ras-related protein Rab-14 61 4e-10
RB14_MOUSE (Q91V41) Ras-related protein Rab-14 61 4e-10
RB14_HUMAN (P61106) Ras-related protein Rab-14 61 4e-10
RAB2_LYMST (Q05975) Ras-related protein Rab-2 61 6e-10
RB5B_MOUSE (P61021) Ras-related protein Rab-5B 60 7e-10
RB5B_HUMAN (P61020) Ras-related protein Rab-5B 60 7e-10
RAB2_DICDI (P36409) Ras-related protein Rab2 (Fragment) 60 7e-10
RB5C_CANFA (P51147) Ras-related protein Rab-5C 59 2e-09
RB2B_HUMAN (Q8WUD1) Ras-related protein Rab-2B 59 2e-09
RB5C_MOUSE (P35278) Ras-related protein Rab-5C 58 5e-09
RB5C_HUMAN (P51148) Ras-related protein Rab-5C (RAB5L) (L1880) 58 5e-09
RB2B_MOUSE (P59279) Ras-related protein Rab-2B 58 5e-09
>RAB5_TOBAC (P29687) Ras-related protein Rab5
Length = 200
Score = 72.4 bits (176), Expect = 2e-13
Identities = 32/54 (59%), Positives = 43/54 (79%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+VMAL NK+DLE KR+V EE +A+ENG+F+METSAKT N+ND+F+EI +
Sbjct: 116 MVMALAGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAK 169
>RHN1_NICPL (P31583) Ras-related protein RHN1
Length = 200
Score = 67.8 bits (164), Expect = 5e-12
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+VMAL NK+DLE +R+V EE +A+ENG+F+METSAKT N+N +F+EI +
Sbjct: 116 MVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAK 169
>RHA1_ARATH (P31582) Ras-related protein RHA1
Length = 200
Score = 63.5 bits (153), Expect = 9e-11
Identities = 29/54 (53%), Positives = 39/54 (71%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+VMAL NK+DL R+V EE +AQEN +F+METSAKT N+ D+F+EI +
Sbjct: 116 MVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAK 169
>RB2A_RAT (P05712) Ras-related protein Rab-2A
Length = 212
Score = 61.2 bits (147), Expect = 4e-10
Identities = 27/54 (50%), Positives = 39/54 (72%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+V+ L+ NKSDLE +REV+ EEG FA+E+G+ +METSAKT N+ + F +
Sbjct: 112 MVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 165
>RB2A_RABIT (Q01971) Ras-related protein Rab-2A
Length = 212
Score = 61.2 bits (147), Expect = 4e-10
Identities = 27/54 (50%), Positives = 39/54 (72%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+V+ L+ NKSDLE +REV+ EEG FA+E+G+ +METSAKT N+ + F +
Sbjct: 112 MVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 165
>RB2A_MOUSE (P53994) Ras-related protein Rab-2A
Length = 212
Score = 61.2 bits (147), Expect = 4e-10
Identities = 27/54 (50%), Positives = 39/54 (72%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+V+ L+ NKSDLE +REV+ EEG FA+E+G+ +METSAKT N+ + F +
Sbjct: 112 MVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 165
>RB2A_HUMAN (P61019) Ras-related protein Rab-2A
Length = 212
Score = 61.2 bits (147), Expect = 4e-10
Identities = 27/54 (50%), Positives = 39/54 (72%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+V+ L+ NKSDLE +REV+ EEG FA+E+G+ +METSAKT N+ + F +
Sbjct: 112 MVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 165
>RB2A_CANFA (P61105) Ras-related protein Rab-2A
Length = 212
Score = 61.2 bits (147), Expect = 4e-10
Identities = 27/54 (50%), Positives = 39/54 (72%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+V+ L+ NKSDLE +REV+ EEG FA+E+G+ +METSAKT N+ + F +
Sbjct: 112 MVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAK 165
>RB14_RAT (P61107) Ras-related protein Rab-14
Length = 215
Score = 61.2 bits (147), Expect = 4e-10
Identities = 27/53 (50%), Positives = 38/53 (70%)
Query: 5 VMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
V+ L+ NK+DLE +R+V EE QFA+ENG+ ++E SAKT EN+ D F E +
Sbjct: 118 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 170
>RB14_MOUSE (Q91V41) Ras-related protein Rab-14
Length = 215
Score = 61.2 bits (147), Expect = 4e-10
Identities = 27/53 (50%), Positives = 38/53 (70%)
Query: 5 VMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
V+ L+ NK+DLE +R+V EE QFA+ENG+ ++E SAKT EN+ D F E +
Sbjct: 118 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 170
>RB14_HUMAN (P61106) Ras-related protein Rab-14
Length = 215
Score = 61.2 bits (147), Expect = 4e-10
Identities = 27/53 (50%), Positives = 38/53 (70%)
Query: 5 VMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
V+ L+ NK+DLE +R+V EE QFA+ENG+ ++E SAKT EN+ D F E +
Sbjct: 118 VIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 170
>RAB2_LYMST (Q05975) Ras-related protein Rab-2
Length = 212
Score = 60.8 bits (146), Expect = 6e-10
Identities = 27/54 (50%), Positives = 39/54 (72%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+V+ L+ NKSDLE +REV+ EEG FA+E+G+ +METSAKT N+ + F +
Sbjct: 112 MVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAK 165
>RB5B_MOUSE (P61021) Ras-related protein Rab-5B
Length = 215
Score = 60.5 bits (145), Expect = 7e-10
Identities = 29/57 (50%), Positives = 38/57 (65%)
Query: 1 SQILVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
S +V+AL NK+DL KR VE EE +A +N + +METSAKT N+NDLF I +
Sbjct: 123 SPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAK 179
>RB5B_HUMAN (P61020) Ras-related protein Rab-5B
Length = 215
Score = 60.5 bits (145), Expect = 7e-10
Identities = 29/57 (50%), Positives = 38/57 (65%)
Query: 1 SQILVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
S +V+AL NK+DL KR VE EE +A +N + +METSAKT N+NDLF I +
Sbjct: 123 SPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAK 179
>RAB2_DICDI (P36409) Ras-related protein Rab2 (Fragment)
Length = 199
Score = 60.5 bits (145), Expect = 7e-10
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLF 52
+ + L+ NKSD+E KR V EEG QFA ENG+ ++ETSAKT N+ + F
Sbjct: 103 MTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAF 151
>RB5C_CANFA (P51147) Ras-related protein Rab-5C
Length = 216
Score = 58.9 bits (141), Expect = 2e-09
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGRGF--ES 61
+V+AL NK+DL KR VE +E +A +N + +METSAKT N+N++F I +
Sbjct: 127 IVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
Query: 62 PGRSSYAPTK 71
P ++ AP++
Sbjct: 187 PQNAAGAPSR 196
>RB2B_HUMAN (Q8WUD1) Ras-related protein Rab-2B
Length = 216
Score = 58.9 bits (141), Expect = 2e-09
Identities = 27/57 (47%), Positives = 40/57 (69%)
Query: 1 SQILVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
S +V+ L+ NKSDLE +R+V+ EEG FA+E+G+ +METSAKT N+ + F +
Sbjct: 109 SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 165
>RB5C_MOUSE (P35278) Ras-related protein Rab-5C
Length = 216
Score = 57.8 bits (138), Expect = 5e-09
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+V+AL NK+DL KR VE +E +A +N + +METSAKT N+N++F I +
Sbjct: 127 IVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 180
>RB5C_HUMAN (P51148) Ras-related protein Rab-5C (RAB5L) (L1880)
Length = 216
Score = 57.8 bits (138), Expect = 5e-09
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 4 LVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
+V+AL NK+DL KR VE +E +A +N + +METSAKT N+N++F I +
Sbjct: 127 IVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 180
>RB2B_MOUSE (P59279) Ras-related protein Rab-2B
Length = 216
Score = 57.8 bits (138), Expect = 5e-09
Identities = 26/57 (45%), Positives = 40/57 (69%)
Query: 1 SQILVMALVANKSDLEPKREVEIEEGGQFAQENGMFYMETSAKTVENINDLFFEIGR 57
S +V+ L+ NKSDLE +R+V+ EEG FA+E+G+ +METSAKT N+ + + +
Sbjct: 109 SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAK 165
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.311 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,563,957
Number of Sequences: 164201
Number of extensions: 371256
Number of successful extensions: 1085
Number of sequences better than 10.0: 359
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 359
length of query: 88
length of database: 59,974,054
effective HSP length: 64
effective length of query: 24
effective length of database: 49,465,190
effective search space: 1187164560
effective search space used: 1187164560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0033b.5