BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0032.7
         (496 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SLP1_CLOTM (Q06852) Cell surface glycoprotein 1 precursor (Outer...    45  6e-04
YSR2_CAEEL (Q09950) Hypothetical protein F59B10.2 in chromosome II     41  0.008
CORO_SCHPO (O13923) Coronin-like protein crn1                          40  0.018
NFM_RABIT (P54938) Neurofilament triplet M protein (160 kDa neur...    39  0.024
NFH_HUMAN (P12036) Neurofilament triplet H protein (200 kDa neur...    39  0.024
MAPB_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [...    39  0.024
NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurof...    39  0.040
NUCL_CHICK (P15771) Nucleolin (Protein C23)                            38  0.053
MR11_NEUCR (Q9C291) Double-strand break repair protein mus-23 (R...    38  0.069
HRX_HUMAN (Q03164) Zinc finger protein HRX (ALL-1) (Trithorax-li...    38  0.069
RFC1_MOUSE (P35601) Activator 1 140 kDa subunit (Replication fac...    37  0.090
NUCL_XENLA (P20397) Nucleolin (Protein C23)                            37  0.090
ABP1_SACEX (P38479) Actin binding protein                              37  0.090
Y044_UREPA (Q9PRA1) Hypothetical protein UU044                         37  0.12
UN89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Uncoo...    37  0.12
DNLI_CAEEL (Q27474) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleo...    37  0.12
DNL1_RAT (Q9JHY8) DNA ligase I (EC 6.5.1.1) (Polydeoxyribonucleo...    37  0.12
ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (X-li...    37  0.12
YIS3_YEAST (P40563) Hypothetical 74.8 kDa protein in BET1-PAN1 i...    37  0.15
RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type r...    36  0.20

>SLP1_CLOTM (Q06852) Cell surface glycoprotein 1 precursor (Outer
            layer protein B) (S-layer protein 1)
          Length = 1664

 Score = 44.7 bits (104), Expect = 6e-04
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 15/130 (11%)

Query: 24   TDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKSCPVTY 83
            +DE   +DE +P ++P + +P    S     SD+  P    TP   PTP           
Sbjct: 981  SDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTP----------- 1029

Query: 84   KSRQATVKGKGKQKVVKTPSEKKKRKVPVDV---EDSESDAEADVQDIRPSEKKKYSGKR 140
             S + T   +       TPSE  +  +P D    E + SD      +  PS++   S + 
Sbjct: 1030 -SDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 1088

Query: 141  IPQNVPVVPI 150
             P   P  PI
Sbjct: 1089 TPSETPEEPI 1098



 Score = 41.6 bits (96), Expect = 0.005
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 24   TDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKSCPVTY 83
            +DE   +DE +P ++P + +P    S     SD+  P    TP   PTP           
Sbjct: 1251 SDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTP----------- 1299

Query: 84   KSRQATVKGKGKQKVVKTPSEKKKRKVPVDV---EDSESDAEADVQDIRPSEKKKYSGKR 140
             S + T   +       TPSE  +  +P D    E + SD      +  PS++   S + 
Sbjct: 1300 -SDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 1358

Query: 141  IPQNVP 146
             P + P
Sbjct: 1359 TPSDEP 1364



 Score = 41.6 bits (96), Expect = 0.005
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 24   TDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKSCPVTY 83
            +DE   +DE +P ++P + +P    S     SD+  P    TP   PTP           
Sbjct: 926  SDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTP----------- 974

Query: 84   KSRQATVKGKGKQKVVKTPSEKKKRKVPVDV---EDSESDAEADVQDIRPSEKKKYSGKR 140
             S + T   +       TPSE  +  +P D    E + SD      +  PS++   S + 
Sbjct: 975  -SDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 1033

Query: 141  IPQNVP 146
             P + P
Sbjct: 1034 TPSDEP 1039



 Score = 41.2 bits (95), Expect = 0.006
 Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 22/149 (14%)

Query: 24   TDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTP-----PKRSKS 78
            +DE   +DE +P ++P + +P    S     SD+  P    TP   PTP     P  +  
Sbjct: 1079 SDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPE 1138

Query: 79   CPV--------------TYKSRQATVKGKGKQKVVKTPSEKKKRKVPVDV---EDSESDA 121
             P+                 S + T   +       TPSE  +  +P D    E + SD 
Sbjct: 1139 EPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDE 1198

Query: 122  EADVQDIRPSEKKKYSGKRIPQNVPVVPI 150
                 +  PS++   S +  P   P  PI
Sbjct: 1199 PTPSDEPTPSDEPTPSDEPTPSETPEEPI 1227



 Score = 41.2 bits (95), Expect = 0.006
 Identities = 36/149 (24%), Positives = 55/149 (36%), Gaps = 22/149 (14%)

Query: 24  TDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTP-----PKRSKS 78
           +DE   +DE +P ++P + +P    S     SD+  P    TP   PTP     P  +  
Sbjct: 797 SDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPE 856

Query: 79  CPV--------------TYKSRQATVKGKGKQKVVKTPSEKKKRKVPVDV---EDSESDA 121
            P+                 S + T   +       TPSE  +  +P D    E + SD 
Sbjct: 857 EPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDE 916

Query: 122 EADVQDIRPSEKKKYSGKRIPQNVPVVPI 150
                +  PS++   S +  P   P  PI
Sbjct: 917 PTPSDEPTPSDEPTPSDEPTPSETPEEPI 945



 Score = 37.4 bits (85), Expect = 0.090
 Identities = 30/126 (23%), Positives = 46/126 (35%), Gaps = 27/126 (21%)

Query: 24   TDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKSCPVTY 83
            +DE   +DE +P ++P + +P    S     SD+  P    TP   PTP           
Sbjct: 1208 SDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDE-------- 1259

Query: 84   KSRQATVKGKGKQKVVKTPSEKKKRKVPVDV---EDSESDAEADVQDIRPSEKKKYSGKR 140
                             TPSE  +  +P D    E + SD      +  PS++   S + 
Sbjct: 1260 ----------------PTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEP 1303

Query: 141  IPQNVP 146
             P + P
Sbjct: 1304 TPSDEP 1309



 Score = 36.6 bits (83), Expect = 0.15
 Identities = 37/147 (25%), Positives = 52/147 (35%), Gaps = 28/147 (19%)

Query: 14   PTNVPHCEDV-------TDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTP 66
            PT+ P  E         +DE   +DE +P   P       E   +   SD+  P    TP
Sbjct: 1056 PTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTP 1115

Query: 67   EVTPTPPKRSKSCPVTYKSRQATVKGKGKQKVVKTPSEKKKRKVPVDV---EDSESDAEA 123
               PTP            S + T   +       TPSE  +  +P D    E + SD   
Sbjct: 1116 SDEPTP------------SDEPTPSDE------PTPSETPEEPIPTDTPSDEPTPSDEPT 1157

Query: 124  DVQDIRPSEKKKYSGKRIPQNVPVVPI 150
               +  PS++   S +  P   P  PI
Sbjct: 1158 PSDEPTPSDEPTPSDEPTPSETPEEPI 1184



 Score = 36.6 bits (83), Expect = 0.15
 Identities = 37/147 (25%), Positives = 52/147 (35%), Gaps = 28/147 (19%)

Query: 14  PTNVPHCEDV-------TDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTP 66
           PT+ P  E         +DE   +DE +P   P       E   +   SD+  P    TP
Sbjct: 774 PTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTP 833

Query: 67  EVTPTPPKRSKSCPVTYKSRQATVKGKGKQKVVKTPSEKKKRKVPVDV---EDSESDAEA 123
              PTP            S + T   +       TPSE  +  +P D    E + SD   
Sbjct: 834 SDEPTP------------SDEPTPSDE------PTPSETPEEPIPTDTPSDEPTPSDEPT 875

Query: 124 DVQDIRPSEKKKYSGKRIPQNVPVVPI 150
              +  PS++   S +  P   P  PI
Sbjct: 876 PSDEPTPSDEPTPSDEPTPSETPEEPI 902


>YSR2_CAEEL (Q09950) Hypothetical protein F59B10.2 in chromosome II
          Length = 482

 Score = 40.8 bits (94), Expect = 0.008
 Identities = 40/140 (28%), Positives = 62/140 (43%), Gaps = 19/140 (13%)

Query: 3   KTYMSKVQNKEPTNVPHCEDVTDEEEINDE----DSPVKSP--PDVVPGVETSVSQEISD 56
           K   SK   +E     H E + +EE+I+++      P KSP    +  G E+S S  I  
Sbjct: 103 KMLRSKAAGEESKRHAHFESIQEEEKISEDLPTAQLPSKSPFKKAIQSGSESSDSDSIIF 162

Query: 57  QENPGKVSTPEVTPTPPKRSKSCPVTYKSRQATVKGKGKQKVVK-TPSEKKKRKVPVDVE 115
            E        EV P+PP++    P   ++    V+ K ++  VK   + KKK K P   E
Sbjct: 163 DE-----VFEEVLPSPPRK----PAPARTAPIVVEKKIEKPAVKEQKARKKKEKTPTPTE 213

Query: 116 ---DSESDAEADVQDIRPSE 132
              +S SD+ +  +    SE
Sbjct: 214 SSFESSSDSSSTSESSTSSE 233


>CORO_SCHPO (O13923) Coronin-like protein crn1
          Length = 601

 Score = 39.7 bits (91), Expect = 0.018
 Identities = 38/180 (21%), Positives = 76/180 (42%), Gaps = 5/180 (2%)

Query: 10  QNKEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVT 69
           + K  T  P  + V+  +E  +E  P K P +V P   ++   E   ++        E T
Sbjct: 422 EEKVETPKPEAQPVSKPKESAEEQKPSKEP-EVKPTTPSASKVEEPSKKRDEDNHQKEET 480

Query: 70  PTPPKRSKSCPVTYKSRQATVKGKGKQKVVKTPSEKKKRKVPVDVEDSESDAEADVQDIR 129
            T PKR K+       + A+      + V K PSE+KK    ++V D    A    +  +
Sbjct: 481 VTQPKREKTPVEKSFPKPASSPVTFSEDVKKEPSEEKK----LEVSDEAPKAAPLAESKK 536

Query: 130 PSEKKKYSGKRIPQNVPVVPIDRVSFHLEESVQKWKFVCKIRMAKVREVGPDVLECKDVI 189
             EK+ +   +  +++  V +  ++   E   ++++    IR  K+ ++   + +  + I
Sbjct: 537 VEEKEPFYVSKDKKDISAVNLADLNKRFEGFEKRYEEELAIRDWKIAQLEDKLAKLTEAI 596


>NFM_RABIT (P54938) Neurofilament triplet M protein (160 kDa
           neurofilament protein) (Neurofilament medium
           polypeptide) (NF-M) (Fragment)
          Length = 644

 Score = 39.3 bits (90), Expect = 0.024
 Identities = 37/134 (27%), Positives = 51/134 (37%), Gaps = 7/134 (5%)

Query: 21  EDVTDEEEINDEDSPVKSPPDVVPGVETSVS------QEISDQENPGKVSTPEVTPTPPK 74
           E+   EEE  +ED  VKS      G E   S      QE  + E  G+V   E       
Sbjct: 315 EEEGQEEEEEEEDEGVKSDQAEEGGSEKEGSSKNEGEQEEGETEAEGEVEEAEAKEEKKT 374

Query: 75  RSKSCPVTYKSRQATVKGKGKQKVVKTPSEKKK-RKVPVDVEDSESDAEADVQDIRPSEK 133
             KS  V  K    T    GK +  K+P  K    +V    E +    E   ++ +  E+
Sbjct: 375 EEKSEEVAAKEEPVTEAKVGKPEKAKSPVPKSPVEEVKPKAEATAGKGEQKEEEEKVEEE 434

Query: 134 KKYSGKRIPQNVPV 147
           KK + K  P+   V
Sbjct: 435 KKKAAKESPKEEKV 448



 Score = 34.7 bits (78), Expect = 0.58
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 16/103 (15%)

Query: 51  SQEISDQENP---GKVSTPEVTPTPPKRSKSCPVTYKSRQATVKGKGKQKVVKTPSEKKK 107
           S+E++ +E P    KV  PE   +P  +S    V  K+     KG+ K++  K   EKKK
Sbjct: 378 SEEVAAKEEPVTEAKVGKPEKAKSPVPKSPVEEVKPKAEATAGKGEQKEEEEKVEEEKKK 437

Query: 108 RKVPVDVEDSESDAEADVQDIRPSEKKKYSGKRIPQNVPVVPI 150
                     ES  E  V      EKK+   K +P+     P+
Sbjct: 438 AA-------KESPKEEKV------EKKEEKPKDVPKKKAESPV 467


>NFH_HUMAN (P12036) Neurofilament triplet H protein (200 kDa
           neurofilament protein) (Neurofilament heavy polypeptide)
           (NF-H)
          Length = 1026

 Score = 39.3 bits (90), Expect = 0.024
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 11/132 (8%)

Query: 7   SKVQNKEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTP 66
           +K   KE    P  E  + E+  +      KSPP+       + S E  + ++P +V +P
Sbjct: 530 AKSPEKEEAKSP-AEVKSPEKAKSPAKEEAKSPPE-------AKSPEKEEAKSPAEVKSP 581

Query: 67  EVTPTPPKRSKSCPVTYKS---RQATVKGKGKQKVVKTPSEKKKRKVPVDVEDSESDAEA 123
           E   +P K     P   KS    ++ VK + K         K++ K P +V+  E     
Sbjct: 582 EKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSP 641

Query: 124 DVQDIRPSEKKK 135
             ++ +  EK K
Sbjct: 642 TKEEAKSPEKAK 653



 Score = 37.7 bits (86), Expect = 0.069
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 14/136 (10%)

Query: 7   SKVQNKEPTNVPHCEDVTD--EEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVS 64
           +K   KE   +P  E+V    +EE   ++  VK PP      +   + +  ++++  K  
Sbjct: 813 AKAPEKE---IPKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEE 869

Query: 65  TPEV-TPTPPKRSKSCPVTYKSRQATVKGKGKQKVVKTPSEKKKRKVPVDVEDSESDAEA 123
            P+   P P    K  P   K +++ V+ K ++        + K+KVP   +++ +  E 
Sbjct: 870 APKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEA-------EDKKKVPTPEKEAPAKVEV 922

Query: 124 DVQDIRPSEKKKYSGK 139
             +D +P EK + + K
Sbjct: 923 K-EDAKPKEKTEVAKK 937



 Score = 36.2 bits (82), Expect = 0.20
 Identities = 34/139 (24%), Positives = 56/139 (39%), Gaps = 9/139 (6%)

Query: 13  EPTNVPHCEDVTDEEEINDE-DSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPT 71
           E    P  E+V   E+         K+P   +P  E  V   + ++E P +V   E    
Sbjct: 789 EKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKE-EVKSPVKEEEKPQEVKVKE---- 843

Query: 72  PPKRS--KSCPVTYKSRQATVKGKGKQKVVKTPSEK-KKRKVPVDVEDSESDAEADVQDI 128
           PPK++  +  P T K+ +     K +    + P  K +++K P   +  ES  EA  ++ 
Sbjct: 844 PPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEA 903

Query: 129 RPSEKKKYSGKRIPQNVPV 147
              +K     K  P  V V
Sbjct: 904 EDKKKVPTPEKEAPAKVEV 922



 Score = 34.7 bits (78), Expect = 0.58
 Identities = 37/134 (27%), Positives = 54/134 (39%), Gaps = 32/134 (23%)

Query: 21  EDVTDEEEINDEDSPVKSPP----------------DVVPGVETSVSQEISDQENPGKVS 64
           E+  +EEE    +   KSPP                +       + S E  + ++P +V 
Sbjct: 486 EEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVK 545

Query: 65  TPEVTPTPPKRSKSCPVTYKSRQ-------ATVKGKGKQK-----VVKTPSEKK---KRK 109
           +PE   +P K     P   KS +       A VK   K K       K+P+E K   K K
Sbjct: 546 SPEKAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAK 605

Query: 110 VPVDVEDSESDAEA 123
            PV  E+++S AEA
Sbjct: 606 SPVK-EEAKSPAEA 618



 Score = 33.1 bits (74), Expect = 1.7
 Identities = 32/111 (28%), Positives = 45/111 (39%), Gaps = 7/111 (6%)

Query: 34  SPVKSP---PDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKSCPVTYKS---RQ 87
           SPVK     P  V   E + S    + ++P K  +PE   +P K     P   KS    +
Sbjct: 620 SPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKSPEKAKSPEKEEAKSPEKAKSPVKAE 679

Query: 88  ATVKGKGKQKVVKTPSEKKKRKVPVDVE-DSESDAEADVQDIRPSEKKKYS 137
           A    K K  V       +K K PV  E  S   A++ V++   S +K  S
Sbjct: 680 AKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKS 730


>MAPB_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B)
           [Contains: MAP1 light chain LC1]
          Length = 2468

 Score = 39.3 bits (90), Expect = 0.024
 Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 15/150 (10%)

Query: 7   SKVQNKEPTNVPHCEDV----TDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPG- 61
           SK +  E T V H E      + E+ +  +D PVK+  +  P V     +E+  +E P  
Sbjct: 561 SKEETPEVTKVNHVEKPPKVESKEKVMVKKDKPVKT--ETKPSV---TEKEVPSKEEPSP 615

Query: 62  ---KVSTPEVTPTPPKRSKSCPVTYKSRQATVKGKGKQKVVKTPSEKKKRKVPVDVED-- 116
              +V+  + T   PK +K   V  +++      K +++  K    KK+ K P+  E+  
Sbjct: 616 VKAEVAEKQATDVKPKAAKEKTVKKETKVKPEDKKEEKEKPKKEVAKKEDKTPIKKEEKP 675

Query: 117 SESDAEADVQDIRPSEKKKYSGKRIPQNVP 146
            + + + +V+     E+KK   K + +  P
Sbjct: 676 KKEEVKKEVKKEIKKEEKKEPKKEVKKETP 705


>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa
           neurofilament protein) (Neurofilament heavy polypeptide)
           (NF-H) (Fragment)
          Length = 831

 Score = 38.5 bits (88), Expect = 0.040
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 15/136 (11%)

Query: 7   SKVQNKEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTP 66
           ++V++ E    P  ++    E+    D  VKSP    P  E        + + P  + +P
Sbjct: 557 AEVKSPEKAKSPMRKEAKSPEKAKTLD--VKSPEAKPPAKE--------EAKRPADIRSP 606

Query: 67  EVTPTPPKRSKSCPVTYKSRQATVKGKGKQKVVKTPSEKKKRKVP---VDVEDSESDAEA 123
           E   +P K     P   ++R  T K   K++ VK+P E+ K K P   V+ E + +  + 
Sbjct: 607 EQVKSPAKEEAKSPEKEETR--TEKVAPKKEEVKSPVEEVKAKEPPKKVEEEKTPATPKT 664

Query: 124 DVQDIRPSEKKKYSGK 139
           +V++ +  E  K + K
Sbjct: 665 EVKESKKDEAPKEAQK 680



 Score = 37.0 bits (84), Expect = 0.12
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 10/143 (6%)

Query: 7   SKVQNKEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTP 66
           +K   KE T         +E +   E+   K PP  V   +T  + +   +E+    +  
Sbjct: 617 AKSPEKEETRTEKVAPKKEEVKSPVEEVKAKEPPKKVEEEKTPATPKTEVKESKKDEAPK 676

Query: 67  EVTPTPPKRSKSCPVTYKSRQATVKGK---GKQKVVKTPSEKKKRKVPVDVE----DSES 119
           E     PK  +  P+T K + +  + K    K+K    P E+   K+ V  E    +   
Sbjct: 677 EAQK--PKAEEKEPLTEKPKDSPGEAKKEEAKEKKAAAPEEETPAKLGVKEEAKPKEKAE 734

Query: 120 DAEADVQDIRPSEKKKYSGKRIP 142
           DA+A  +  +PSEK+K   + +P
Sbjct: 735 DAKAK-EPSKPSEKEKPKKEEVP 756


>NUCL_CHICK (P15771) Nucleolin (Protein C23)
          Length = 694

 Score = 38.1 bits (87), Expect = 0.053
 Identities = 42/170 (24%), Positives = 70/170 (40%), Gaps = 20/170 (11%)

Query: 8   KVQNKEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPE 67
           K Q K+    P  + V + EE    D    S  +V+   +      ++  +     +   
Sbjct: 9   KNQMKQKKMAPPPKKVEESEEEESSDLEESSGEEVMVPPKKQQKAAVTPAKKAATPAKKA 68

Query: 68  VTP-----TPPKRSKSCP----VTYKSRQATVKGKGK---QKVVKTPSEKKKRKVPVDVE 115
            TP     TP K++ + P    V    ++A V GKG    +   K  SE++      D E
Sbjct: 69  ATPAKKAVTPAKKAVATPAKKAVAPSPKKAAVVGKGAKNGKNAKKEESEEEDEDDEDDEE 128

Query: 116 DSESDAEADVQD-----IRPSEKKKYSGKRIPQNVP-VVPIDRVSFHLEE 159
           D + + E+D ++     ++P+ KK  S   +P   P VVP  + S   EE
Sbjct: 129 DEDEEEESDEEEEPAVPVKPAAKK--SAAAVPAKKPAVVPAKQESEEEEE 176



 Score = 33.1 bits (74), Expect = 1.7
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 25/142 (17%)

Query: 3   KTYMSKVQNKEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGK 62
           K   + V  K+P  VP  ++  +EEE +DE                    E  ++++  +
Sbjct: 151 KKSAAAVPAKKPAVVPAKQESEEEEEEDDE--------------------EEDEEDDESE 190

Query: 63  VSTPEVTPTPPKRSKSCPVTYKSRQATVKGKGKQKVVKTPSEKKKRKVPVDVED-SESDA 121
               + TP P K+    P   K+  A  K + + +  +   ++ +     + ED  ES+ 
Sbjct: 191 DEAMDTTPAPVKK----PTPAKATPAKAKAESEDEEDEEDEDEDEEDEDDEEEDEEESED 246

Query: 122 EADVQDIRPSEKKKYSGKRIPQ 143
           E  V++     KK+ + K  P+
Sbjct: 247 EKPVKEAPGKRKKEMANKSAPE 268


>MR11_NEUCR (Q9C291) Double-strand break repair protein mus-23
           (Recombinational repair protein mus-23)
          Length = 760

 Score = 37.7 bits (86), Expect = 0.069
 Identities = 30/123 (24%), Positives = 58/123 (46%), Gaps = 14/123 (11%)

Query: 11  NKEPTNVPHCEDVT--DEEEINDEDS---PVKSPPDVVPGVETSVSQEISDQENPGKVST 65
           N  PT       VT  DE+E  D D+   P+++ P      +T+ + +   +  PGK + 
Sbjct: 585 NDRPTKRVPTSGVTFSDEDEDMDMDNQPVPIRAAPKRGAAAKTTAAAK---KAAPGKKAA 641

Query: 66  PEVTPTPPKRSKSCPVTYKSRQATVKGKGKQKVVKTPSEKKKRKVPVDVEDSESDAEADV 125
           P     P K  K+ P    +++A  +G+ K+       E+++   P D ++ E +A+ + 
Sbjct: 642 PAKKAAPAK--KAAP----AKKAPARGRKKKTPFVDSDEEEEEDYPEDDDEEEEEADEEE 695

Query: 126 QDI 128
           +D+
Sbjct: 696 EDV 698



 Score = 31.6 bits (70), Expect = 4.9
 Identities = 30/124 (24%), Positives = 42/124 (33%), Gaps = 18/124 (14%)

Query: 21  EDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKSCP 80
           ED+  E E    D P K  P    GV  S   E  D +N      P      PKR  +  
Sbjct: 574 EDIPAEVEPKGNDRPTKRVP--TSGVTFSDEDEDMDMDNQ-----PVPIRAAPKRGAAAK 626

Query: 81  VTYKSRQAT-----------VKGKGKQKVVKTPSEKKKRKVPVDVEDSESDAEADVQDIR 129
            T  +++A               K      K P+  +K+K P    D E + +    D  
Sbjct: 627 TTAAAKKAAPGKKAAPAKKAAPAKKAAPAKKAPARGRKKKTPFVDSDEEEEEDYPEDDDE 686

Query: 130 PSEK 133
             E+
Sbjct: 687 EEEE 690


>HRX_HUMAN (Q03164) Zinc finger protein HRX (ALL-1) (Trithorax-like
            protein)
          Length = 3969

 Score = 37.7 bits (86), Expect = 0.069
 Identities = 40/145 (27%), Positives = 57/145 (38%), Gaps = 6/145 (4%)

Query: 8    KVQNKEPTNVPHCEDVTDEE--EINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVST 65
            K  +KE + V +  D + +      ++ +P KS  +  P        E  +   PG  S 
Sbjct: 1225 KKDSKESSVVKNVVDSSQKPTPSAREDPAPKKSSSEPPPRKPVEEKSEEGNVSAPGPESK 1284

Query: 66   PEVTPTPPKRSK--SCPVTYKSRQATVKGKGKQKVVKT-PSEKKKRKVPVDVEDSESDAE 122
               TP   K SK  S P      Q    G  +++V KT PSE KK++ P      E   +
Sbjct: 1285 QATTPASRKSSKQVSQPALVIPPQPPTTGPPRKEVPKTTPSEPKKKQPPPPESGPEQSKQ 1344

Query: 123  ADVQDIRPSEKKKYSGKRIPQNVPV 147
              V   RPS   K   K   +  PV
Sbjct: 1345 KKVAP-RPSIPVKQKPKEKEKPPPV 1368



 Score = 30.8 bits (68), Expect = 8.4
 Identities = 40/178 (22%), Positives = 65/178 (36%), Gaps = 26/178 (14%)

Query: 2   RKTYMSKVQNKEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPG 61
           RK  +      EP +  H          + E SP+  P  V   +  SVS   +   NP 
Sbjct: 736 RKRKVFSPIRSEPRSPSHSMRTRSGRLSSSELSPLTPPSSVSSSLSISVSPLATSALNP- 794

Query: 62  KVSTPEVTPTP----------PKRSKSCPVT-------------YKSRQATVKGKGKQKV 98
             + P  + T           P++  S P               +     T +G+ K K 
Sbjct: 795 TFTFPSHSLTQSGESAEKNQRPRKQTSAPAEPFSSSSPTPLFPWFTPGSQTERGRNKDKA 854

Query: 99  VKTPSEKKKRKVPVDVEDS-ESDAEADVQDIRPSEK-KKYSGKRIPQNVPVVPIDRVS 154
            +  S+ +     V+ + S E D E + ++ R S K K+  G  I  +  + P+ RVS
Sbjct: 855 PEELSKDRDADKSVEKDKSRERDREREKENKRESRKEKRKKGSEIQSSSALYPVGRVS 912


>RFC1_MOUSE (P35601) Activator 1 140 kDa subunit (Replication factor
           C large subunit) (A1 140 kDa subunit) (RF-C 140 kDa
           subunit) (Activator 1 large subunit) (A1-P145)
           (Differentiation specific element binding protein)
           (ISRE-binding protein)
          Length = 1131

 Score = 37.4 bits (85), Expect = 0.090
 Identities = 26/97 (26%), Positives = 45/97 (45%), Gaps = 11/97 (11%)

Query: 86  RQATVKGKGKQKVVKTPSEKKKRKVPVDVEDSESDAEADVQDIRPSEKK---KYSGKRIP 142
           ++A V   GK+   K     KK+++  D  DSES+    V++ +   +K    Y   ++ 
Sbjct: 40  KEAKVNNSGKEDASKPKQHSKKKRIIYD-SDSESEETVQVKNAKKKSEKLSLSYKPGKVS 98

Query: 143 QNVPVVPIDRVSFHLEESVQKWKFVCKIRMAKVREVG 179
           Q  PV        ++ E+ +   FVCK   +K +E G
Sbjct: 99  QKDPVT-------YVSETDEDDDFVCKKAASKSKENG 128


>NUCL_XENLA (P20397) Nucleolin (Protein C23)
          Length = 650

 Score = 37.4 bits (85), Expect = 0.090
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 21  EDVTDEEEINDEDS----PVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRS 76
           ++  +EE+ +DE++    P+K+ P     V      E  D +         V   P    
Sbjct: 86  QESEEEEDDSDEEAEDQKPIKNKPVAKKAVAKKEESEEDDDDEDESEEEKAVAKKPTPAK 145

Query: 77  KSCPVTYKSRQATVKGKGKQKVVKTPSEKKKRKVPVDVEDSESDAEADVQDIRPSEKKKY 136
           K      +S +   +    + +   P+ K K+      ED E + + D +D    E+++ 
Sbjct: 146 KPAGKKQESEEEDDEESEDEPMEVAPALKGKKTAQAAEEDDEEEDDDDEEDDDDEEEQQG 205

Query: 137 SGKR---IPQNVP 146
           S KR   +P+ +P
Sbjct: 206 SAKRKKEMPKTIP 218



 Score = 36.6 bits (83), Expect = 0.15
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 15/145 (10%)

Query: 7   SKVQNKEPTNVPHCEDVTDEEEINDEDS---PVKSPPDVVPGVETSVSQEISDQENPGKV 63
           +K +   P      ED  +EE++ ++DS    V+ P    P  +T+   + +    PGK 
Sbjct: 11  AKPKKAAPPPPKDMEDSEEEEDMEEDDSSDEEVEVPVKKTPAKKTATPAKAT----PGKA 66

Query: 64  STP-EVTPTPPKRSKSCPVTY-------KSRQATVKGKGKQKVVKTPSEKKKRKVPVDVE 115
           +TP +   TP K  K                +A  +   K K V   +  KK +   D +
Sbjct: 67  ATPGKKGATPAKNGKQAKKQESEEEEDDSDEEAEDQKPIKNKPVAKKAVAKKEESEEDDD 126

Query: 116 DSESDAEADVQDIRPSEKKKYSGKR 140
           D +   E      +P+  KK +GK+
Sbjct: 127 DEDESEEEKAVAKKPTPAKKPAGKK 151



 Score = 35.0 bits (79), Expect = 0.45
 Identities = 26/109 (23%), Positives = 51/109 (45%), Gaps = 8/109 (7%)

Query: 35  PVKSPPDVVPGVETSVSQEISDQENPG--KVSTPEVTPTPPKRSKSCPVTYKSRQATVKG 92
           P K+ P     +E S  +E  ++++    +V  P V  TP K++ +       + AT   
Sbjct: 13  PKKAAPPPPKDMEDSEEEEDMEEDDSSDEEVEVP-VKKTPAKKTATPAKATPGKAATPGK 71

Query: 93  KGKQKVVKTPSEKKKRKVPVDVEDSESDAEADVQDIRPSEKKKYSGKRI 141
           KG      TP++  K+    + E+ E D++ + +D +P + K  + K +
Sbjct: 72  KG-----ATPAKNGKQAKKQESEEEEDDSDEEAEDQKPIKNKPVAKKAV 115


>ABP1_SACEX (P38479) Actin binding protein
          Length = 617

 Score = 37.4 bits (85), Expect = 0.090
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 10  QNKEPTNVPHCEDVTDEEEINDEDSPVKSPP--DVVPGVETSVSQEISDQEN---PGKVS 64
           +N EP  V   E+  +EEE  +E++P  S P  +  P  E    QE  ++E    P   S
Sbjct: 478 RNTEPEPVEEGEEEEEEEEEEEEEAPAPSLPSRNAAPEPEPEQPQEEEEEEEAPAPSLPS 537

Query: 65  TPEVTPTPPKRS 76
              V P PP+R+
Sbjct: 538 RGSVPPPPPQRA 549


>Y044_UREPA (Q9PRA1) Hypothetical protein UU044
          Length = 782

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 22  DVTDEEEINDEDSPVKSP---PDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKS 78
           D+  EE    E  P   P   P   P +ET   +E+     P     P+  P P  + + 
Sbjct: 107 DIKPEEPKKPEIKPEPKPEPIPQPAPPIETKPKEELLPPNPPPPKEEPKPEPNPQPQPQQ 166

Query: 79  CPVTYKSRQATVKGKGKQKVVKTP-----SEKKKRKVPVDVEDSESDAEADVQDIR-PSE 132
            P    SR   + G   +  V+ P     +E  K+   V+     +D+   +++++   E
Sbjct: 167 VPNNSNSRIIEINGVRVEAEVEVPPPRDIAEYDKQNNLVNPNPYINDSVGKIKNVKVTDE 226

Query: 133 KKKYSGKRIPQNV 145
            +K +GK +  N+
Sbjct: 227 LRKATGKLVQGNL 239


>UN89_CAEEL (O01761) Muscle M-line assembly protein unc-89
            (Uncoordinated protein 89)
          Length = 6632

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 33/139 (23%), Positives = 60/139 (42%), Gaps = 8/139 (5%)

Query: 12   KEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQE----ISDQENPGKVSTPE 67
            K P       D T+  E++ E +  K+   +   + T  S+E    +  ++ P KV    
Sbjct: 1481 KSPVKKEKSPDATNIVEVSSETTIEKTETTMTTEM-THESEESRTSVKKEKTPEKVDEKP 1539

Query: 68   VTPTPPKRSKSCPVTYKSRQATVKGKGKQKVVKTP-SEKKKRKVPVDVEDSESDAEADVQ 126
             +PT   +S    +T + +    K K  +KV + P S  KK K P         +E +V+
Sbjct: 1540 KSPTKKDKSPEKSITEEIKSPVKKEKSPEKVEEKPASPTKKEKSPEKPASPTKKSENEVK 1599

Query: 127  DIRPSEKKKYSGKRIPQNV 145
               P++K+K   K + + +
Sbjct: 1600 S--PTKKEKSPEKSVVEEL 1616



 Score = 35.0 bits (79), Expect = 0.45
 Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 13/155 (8%)

Query: 3    KTYMSKVQNKEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISD----QE 58
            K+   K ++ E + V   +   ++     +D P KSP       E S ++++      ++
Sbjct: 1599 KSPTKKEKSPEKSVVEELKSPKEKSPEKADDKP-KSPTKKEKSPEKSATEDVKSPTKKEK 1657

Query: 59   NPGKVSTPEVTPTPPKRSKSCPVTYKSRQATVKGKGKQKVVKTP-SEKKKRKVP------ 111
            +P KV     +PT  + S +     + +  T K K  Q V + P S  KK K P      
Sbjct: 1658 SPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPEKSVVE 1717

Query: 112  -VDVEDSESDAEADVQDIRPSEKKKYSGKRIPQNV 145
             V     +S  +A+ +   P++K+K   K   + V
Sbjct: 1718 EVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEV 1752



 Score = 35.0 bits (79), Expect = 0.45
 Identities = 40/157 (25%), Positives = 68/157 (42%), Gaps = 22/157 (14%)

Query: 3    KTYMSKVQNKEPTNVPHCED-----VTDEEEINDEDSPVKSPPDVVPGVETSVSQEISD- 56
            +T + K +    T + H  +     V  E+     D   KSP       E S+++EI   
Sbjct: 1501 ETTIEKTETTMTTEMTHESEESRTSVKKEKTPEKVDEKPKSPTKKDKSPEKSITEEIKSP 1560

Query: 57   ---QENPGKVSTPEVTPTPPKRSKSCPVTYKSRQATVKGKGKQKVVKTPSEKKKRKVPVD 113
               +++P KV   E  P  P + +  P   K    T K + +   VK+P++K+K      
Sbjct: 1561 VKKEKSPEKV---EEKPASPTKKEKSP--EKPASPTKKSENE---VKSPTKKEKSPEKSV 1612

Query: 114  VEDSESDAE-----ADVQDIRPSEKKKYSGKRIPQNV 145
            VE+ +S  E     AD +   P++K+K   K   ++V
Sbjct: 1613 VEELKSPKEKSPEKADDKPKSPTKKEKSPEKSATEDV 1649



 Score = 35.0 bits (79), Expect = 0.45
 Identities = 33/152 (21%), Positives = 63/152 (40%), Gaps = 10/152 (6%)

Query: 8    KVQNKEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISD----QENPGKV 63
            K ++ E + V   +   ++     E+ P KSP       E S ++E+      +++P K 
Sbjct: 1707 KEKSPEKSVVEEVKSPKEKSPEKAEEKP-KSPTKKEKSPEKSAAEEVKSPTKKEKSPEK- 1764

Query: 64   STPEVTPTPPKRSKSCPVTYKS---RQATVKGKGKQKVVKTPSEKKKRKVPVDVEDSESD 120
             + E  P  P + +S PV       +  T K K  +KV + P+   K++   +   +E  
Sbjct: 1765 -SAEEKPKSPTKKESSPVKMADDEVKSPTKKEKSPEKVEEKPASPTKKEKTPEKSAAEEL 1823

Query: 121  AEADVQDIRPSEKKKYSGKRIPQNVPVVPIDR 152
                 ++  PS   K +G    +  P  P ++
Sbjct: 1824 KSPTKKEKSPSSPTKKTGDESKEKSPEKPEEK 1855



 Score = 33.9 bits (76), Expect = 0.99
 Identities = 30/138 (21%), Positives = 46/138 (32%), Gaps = 5/138 (3%)

Query: 12   KEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPT 71
            K PT      + + EE+     SP K     V   +  V      +++P KV     +PT
Sbjct: 1753 KSPTKKEKSPEKSAEEK---PKSPTKKESSPVKMADDEVKSPTKKEKSPEKVEEKPASPT 1809

Query: 72   PPKRSKSCPVTYKSRQATVKGKGKQKVVKTPSEKKKRKVPVDVEDSESDAEADVQDIRPS 131
              +++       + +  T K K      K   ++ K K P   E  E       +   P 
Sbjct: 1810 KKEKTPEKSAAEELKSPTKKEKSPSSPTKKTGDESKEKSPEKPE--EKPKSPTPKKSPPG 1867

Query: 132  EKKKYSGKRIPQNVPVVP 149
              KK   K      P  P
Sbjct: 1868 SPKKKKSKSPEAEKPPAP 1885



 Score = 33.5 bits (75), Expect = 1.3
 Identities = 31/125 (24%), Positives = 49/125 (38%), Gaps = 12/125 (9%)

Query: 33   DSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKS--CPVTYKSRQATV 90
            ++ VKSP       E SV +E+   +        +   +P K+ KS     T   +  T 
Sbjct: 1595 ENEVKSPTKKEKSPEKSVVEELKSPKEKSPEKADDKPKSPTKKEKSPEKSATEDVKSPTK 1654

Query: 91   KGKGKQKVVKTP-SEKKKRKVPVDVEDSE---------SDAEADVQDIRPSEKKKYSGKR 140
            K K  +KV + P S  KK   P    D E         S    + +   P++K+K   K 
Sbjct: 1655 KEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKKEKSPQTVEEKPASPTKKEKSPEKS 1714

Query: 141  IPQNV 145
            + + V
Sbjct: 1715 VVEEV 1719



 Score = 31.2 bits (69), Expect = 6.4
 Identities = 29/139 (20%), Positives = 56/139 (39%), Gaps = 3/139 (2%)

Query: 1    TRKTYMSKVQNKEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENP 60
            T+K    +    E    P  ++ + E+      SP K         +  V      +++P
Sbjct: 1635 TKKEKSPEKSATEDVKSPTKKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTKKEKSP 1694

Query: 61   GKVSTPEVTPTPPKRS--KSCPVTYKSRQATVKGKGKQKVVKTPSEKKKRKVPVDVEDSE 118
              V     +PT  ++S  KS     KS +     K ++K  K+P++K+K       E+ +
Sbjct: 1695 QTVEEKPASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEK-PKSPTKKEKSPEKSAAEEVK 1753

Query: 119  SDAEADVQDIRPSEKKKYS 137
            S  + +    + +E+K  S
Sbjct: 1754 SPTKKEKSPEKSAEEKPKS 1772


>DNLI_CAEEL (Q27474) DNA ligase (EC 6.5.1.1)
           (Polydeoxyribonucleotide synthase [ATP])
          Length = 847

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 23/133 (17%)

Query: 22  DVTDEEEINDEDSPVKSPPDVVPGV--ETSVSQEISDQENPGKVSTPEVTPTPPKRS--- 76
           D  DE E  +++    +  +V  G   E  V +EI  +E P  VS  +    PP +S   
Sbjct: 708 DEDDEFEEKEDEEEELNMTNVSEGSSKENPVKEEIK-KETPKSVSPKKFEKKPPVKSSPV 766

Query: 77  -----KSCPVTYKSRQ----------ATVKGKGKQKVVKTPSEKKKRKVPVDVEDSESDA 121
                KS P+  ++ +          ++ K   K   V++PS  +K+K+P D    ESD 
Sbjct: 767 NKSPVKSSPIKKEAEKKKGPVASIFSSSTKKNEKDVKVESPSPIRKKKLPSD--SDESDE 824

Query: 122 EADVQDIRPSEKK 134
           E      +P++K+
Sbjct: 825 ETSTNKKQPAKKR 837



 Score = 36.2 bits (82), Expect = 0.20
 Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 9/117 (7%)

Query: 31  DEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTP---TPPKRSKSCPVTYKSRQ 87
           DED   +   D    +  +   E S +ENP K    + TP   +P K  K  PV  KS  
Sbjct: 708 DEDDEFEEKEDEEEELNMTNVSEGSSKENPVKEEIKKETPKSVSPKKFEKKPPV--KSSP 765

Query: 88  ATVKGKGKQKVVKTPSEKKKRKVPVDVEDSESDAEADVQDIRPSEKKKYSGKRIPQN 144
              K   K   +K  +EKKK  V      S    E DV+   PS  +K   K++P +
Sbjct: 766 VN-KSPVKSSPIKKEAEKKKGPVASIFSSSTKKNEKDVKVESPSPIRK---KKLPSD 818


>DNL1_RAT (Q9JHY8) DNA ligase I (EC 6.5.1.1)
           (Polydeoxyribonucleotide synthase [ATP])
          Length = 918

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 40/169 (23%), Positives = 70/169 (40%), Gaps = 18/169 (10%)

Query: 8   KVQNKEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPG-VETSVSQEISDQEN------- 59
           K + KE    P  E +T+ EE+N ++  V+  P V P   E+  S  ++  EN       
Sbjct: 150 KKRKKEDPQTPP-ESLTEAEEVNQKEEQVEDQPTVPPEPTESPESVTLTKTENIPMCKAG 208

Query: 60  -PGKVSTPEVTPTPPKRSKSCPVTYKSRQATVKGKGKQKVVKTPSEKKKRKVPVDVEDSE 118
              K    E +  P + +K     +  R+  VK + KQ+   TP +++ +  P     + 
Sbjct: 209 VKQKPQEEEQSKPPARGAKPLSSFFTPRKPAVKTEVKQEESDTPRKEETKGAPDPTNYNP 268

Query: 119 SDAEADVQDIRPSEKKKYSGKRIPQNVPVVPIDRVSFHLEESVQKWKFV 167
           S +     +  P E   +   +  Q VP + + R    +EE   + K V
Sbjct: 269 SKS-----NYHPIEDACW---KHGQKVPFLAVARTFEKIEEVSARLKMV 309


>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog
           (X-linked nuclear protein-1)
          Length = 1359

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 1   TRKTYMSKVQNKEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENP 60
           T K   SK  ++E +      + +DEEE   E SP   P    P    +V +  SD+E+ 
Sbjct: 245 TEKRKRSKTSSEESSE----SEKSDEEEEEKESSP--KPKKKKP---LAVKKLSSDEES- 294

Query: 61  GKVSTPEVTPTPPKRSKSCPVTYKSRQATVKGKGKQKVVKTPSEKKKRKVPVDVEDSESD 120
            + S  EV P   KR     ++    +   K + +   V+    KKK K     E     
Sbjct: 295 -EESDVEVLPQKKKRGAVTLISDSEDEKDQKSESEASDVEEKVSKKKAKKQESSESGSDS 353

Query: 121 AEADVQDIRPSEKKKYSGKR 140
           +E  +   R S+KK+   K+
Sbjct: 354 SEGSITVNRKSKKKEKPEKK 373



 Score = 34.3 bits (77), Expect = 0.76
 Identities = 31/113 (27%), Positives = 51/113 (44%), Gaps = 8/113 (7%)

Query: 26  EEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKSCPVTYKS 85
           E+   +   P K  P       +S   +  ++E+P K S         KR+KS   + +S
Sbjct: 41  EKREREGKPPPKKRPAKKRKASSSEEDDDDEEESPRKSSKKS-----RKRAKSESESDES 95

Query: 86  --RQATVKGKGKQKVVKTPSEK-KKRKVPVDVEDSESDAEADVQDIRPSEKKK 135
              +   K K K+KV +   EK KK++     ED +SD E + +  + S+K K
Sbjct: 96  DEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEEREQKSKKKSKKTK 148



 Score = 34.3 bits (77), Expect = 0.76
 Identities = 40/154 (25%), Positives = 60/154 (37%), Gaps = 24/154 (15%)

Query: 2   RKTYMSKVQNKEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQ---- 57
           RK   SK +NKE +     E  T EE   DE    KS   +    ++    E  D+    
Sbjct: 163 RKVKKSK-KNKEKSVKKRAE--TSEESDEDEKPSKKSKKGLKKKAKSESESESEDEKEVK 219

Query: 58  ------------ENPGKVSTPEVTPTPP-KRSKSCPVTYKSRQATVKGKGKQKVVKTPSE 104
                       E+  +   PE   T   KRSK    T     +  +   +++  K  S 
Sbjct: 220 KSKKKSKKVVKKESESEDEAPEKKKTEKRKRSK----TSSEESSESEKSDEEEEEKESSP 275

Query: 105 KKKRKVPVDVEDSESDAEADVQDIRPSEKKKYSG 138
           K K+K P+ V+   SD E++  D+    +KK  G
Sbjct: 276 KPKKKKPLAVKKLSSDEESEESDVEVLPQKKKRG 309



 Score = 33.1 bits (74), Expect = 1.7
 Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 24  TDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGKVSTPEVTPTPPKRSKSCPVTY 83
           ++E++ ++E+SP KS        ++    + SD+E   K S  +      K+ KS     
Sbjct: 64  SEEDDDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKS---KK 120

Query: 84  KSRQATVKGKGKQKVVKTPSEKKKRKVPVDVEDSESDAEADVQDIRPSEKKK 135
           K   ++ + +   +  +  S+KK +K         S+   + + ++ S+K K
Sbjct: 121 KRTTSSSEDEDSDEEREQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNK 172


>YIS3_YEAST (P40563) Hypothetical 74.8 kDa protein in BET1-PAN1
           intergenic region
          Length = 679

 Score = 36.6 bits (83), Expect = 0.15
 Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 16/172 (9%)

Query: 3   KTYMSKVQNKEPTNVPHCEDVTDEEEINDEDSPVKSPPDVVPGVETSVSQEISDQENPGK 62
           K + +    +  T++   ++  D  E+N +         V+    ++V  +I+ +E    
Sbjct: 271 KIFQNPTDEESTTSLNEKQEGKDNMEVNSQPQGPSDTETVIAATSSNVPSQIASEEEN-- 328

Query: 63  VSTPEVTPTPPKRS-------KSCPVTYKSR------QATVKGKGKQKVVKTPSEKKKRK 109
              P +  + PK+        +  P T + R         +  + + K+ K PSE+ KR+
Sbjct: 329 -DVPVIPRSRPKKDFEAHVQKEELPNTQEKRVSEECDSTLISTEEESKIPKIPSERPKRR 387

Query: 110 VPVDVEDSESDAEADVQDIRPSEKKKYSGKRIPQNVPVVPIDRVSFHLEESV 161
            P  V    S   A  Q++   ++++        +      D    H + S+
Sbjct: 388 APPPVPKKPSSRIAAFQEMLQKQQQQDLHNNGNSSATTASADIAKKHTDSSI 439


>RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type
            ryanodine receptor) (RyR1) (RYR-1) (Skeletal muscle
            calcium release channel)
          Length = 5038

 Score = 36.2 bits (82), Expect = 0.20
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 12/66 (18%)

Query: 22   DVTDEEEINDEDSPV------------KSPPDVVPGVETSVSQEISDQENPGKVSTPEVT 69
            D T  E    E SP+            + PP+  P  E  +  E +D EN  K   PE T
Sbjct: 4459 DTTPAEPPTPEGSPILKRKLGVDGVEEELPPEPEPEPEPELEPEKADAENGEKEEVPEPT 4518

Query: 70   PTPPKR 75
            P PPK+
Sbjct: 4519 PEPPKK 4524


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.333    0.142    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,508,868
Number of Sequences: 164201
Number of extensions: 2278145
Number of successful extensions: 13977
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 154
Number of HSP's that attempted gapping in prelim test: 13513
Number of HSP's gapped (non-prelim): 438
length of query: 496
length of database: 59,974,054
effective HSP length: 114
effective length of query: 382
effective length of database: 41,255,140
effective search space: 15759463480
effective search space used: 15759463480
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 68 (30.8 bits)