BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0030.2
(82 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RS21_ORYSA (P35687) 40S ribosomal protein S21 146 8e-36
R21B_ARATH (Q9M337) 40S ribosomal protein S21-2 144 3e-35
RS21_MAIZE (Q41852) 40S ribosomal protein S21 140 4e-34
RS21_CYAPA (Q9SMI2) 40S ribosomal protein S21 107 5e-24
RS21_YEAST (P05760) 40S ribosomal protein S21 (S26) (YS25) 94 5e-20
RS21_CANAL (Q9P844) 40S ribosomal protein S21 94 6e-20
RS21_RAT (P05765) 40S ribosomal protein S21 93 1e-19
RS21_PIG (P63221) 40S ribosomal protein S21 93 1e-19
RS21_HUMAN (P63220) 40S ribosomal protein S21 93 1e-19
RS21_MOUSE (Q9CQR2) 40S ribosomal protein S21 92 2e-19
RS21_SCHPO (P05764) 40S ribosomal protein S21 (S28) 87 6e-18
RS21_NEUCR (O93798) 40S ribosomal protein S21 (CRP7) 82 2e-16
RS21_CAEEL (P49197) 40S ribosomal protein S21 80 9e-16
YO07_BPL2 (P42542) Hypothetical 14.0 kDa protein (ORF7) 28 5.5
VPP_BPMU (P08558) 43 kDa tail protein (gpP) 27 7.2
LCCI_LEUGE (P34035) Probable leucocin A immunity protein 27 7.2
>RS21_ORYSA (P35687) 40S ribosomal protein S21
Length = 82
Score = 146 bits (369), Expect = 8e-36
Identities = 65/82 (79%), Positives = 80/82 (97%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
MQNEEGQ+ +LY+PRKCSATNR+ITAKDHASVQINIGH+DE+G+Y+G+F+T+AL G+IRA
Sbjct: 1 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60
Query: 61 QGDADSAIDRLWQKKKAEIKQQ 82
QGDADSA+DRLWQK+KAE+KQQ
Sbjct: 61 QGDADSALDRLWQKRKAEVKQQ 82
>R21B_ARATH (Q9M337) 40S ribosomal protein S21-2
Length = 82
Score = 144 bits (364), Expect = 3e-35
Identities = 63/82 (76%), Positives = 76/82 (91%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
M+N+ GQ+TELYIPRKCSATNR+IT+KDHASVQ+NIGHLD +G+Y GQF+T+ALCG++RA
Sbjct: 1 MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60
Query: 61 QGDADSAIDRLWQKKKAEIKQQ 82
QGDADS +DRLWQKKK E KQQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82
>RS21_MAIZE (Q41852) 40S ribosomal protein S21
Length = 81
Score = 140 bits (354), Expect = 4e-34
Identities = 63/81 (77%), Positives = 76/81 (93%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRA 60
MQNEEG+ +LY+PRKCSATNR+ITAKDHASVQINIGHLD +G+Y+G F+T+AL G++RA
Sbjct: 1 MQNEEGKTVDLYVPRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRA 60
Query: 61 QGDADSAIDRLWQKKKAEIKQ 81
QGDADS++DRLWQKKKAEIKQ
Sbjct: 61 QGDADSSLDRLWQKKKAEIKQ 81
>RS21_CYAPA (Q9SMI2) 40S ribosomal protein S21
Length = 82
Score = 107 bits (267), Expect = 5e-24
Identities = 47/75 (62%), Positives = 66/75 (87%), Gaps = 1/75 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLD-ESGVYNGQFSTYALCGYIR 59
MQN+EG+I +LYIPRKCSATNRLI+A DHA+VQIN+GH+D SG+Y G ++T+ALCG++R
Sbjct: 1 MQNDEGKIVDLYIPRKCSATNRLISATDHAAVQINVGHVDPNSGLYTGDYTTFALCGFVR 60
Query: 60 AQGDADSAIDRLWQK 74
+ G++D+A++RL K
Sbjct: 61 SMGESDAALNRLCVK 75
>RS21_YEAST (P05760) 40S ribosomal protein S21 (S26) (YS25)
Length = 87
Score = 94.4 bits (233), Expect = 5e-20
Identities = 42/74 (56%), Positives = 60/74 (80%), Gaps = 1/74 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESG-VYNGQFSTYALCGYIR 59
M+N++GQ+ ELY+PRKCSATNR+I A DHASVQIN+ +DE G G++ TYAL GY+R
Sbjct: 1 MENDKGQLVELYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVR 60
Query: 60 AQGDADSAIDRLWQ 73
++G++D +++RL Q
Sbjct: 61 SRGESDDSLNRLAQ 74
>RS21_CANAL (Q9P844) 40S ribosomal protein S21
Length = 87
Score = 94.0 bits (232), Expect = 6e-20
Identities = 44/75 (58%), Positives = 60/75 (79%), Gaps = 1/75 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESG-VYNGQFSTYALCGYIR 59
M+N++GQ+ ELY+PRKCSATNR+I AKDHASVQI+I +DE G G+ TYAL GY+R
Sbjct: 1 MENDKGQLVELYVPRKCSATNRIIKAKDHASVQISIAKVDEDGRAIAGENITYALSGYVR 60
Query: 60 AQGDADSAIDRLWQK 74
+G+AD +++RL Q+
Sbjct: 61 GRGEADDSLNRLAQQ 75
>RS21_RAT (P05765) 40S ribosomal protein S21
Length = 83
Score = 93.2 bits (230), Expect = 1e-19
Identities = 41/72 (56%), Positives = 56/72 (76%), Gaps = 1/72 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDES-GVYNGQFSTYALCGYIR 59
MQN+ G+ +LY+PRKCSA+NR+I AKDHAS+Q+N+ +D S G +NGQF TY +CG IR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIAAKDHASIQMNVAEVDRSTGRFNGQFKTYGICGAIR 60
Query: 60 AQGDADSAIDRL 71
G++D +I RL
Sbjct: 61 RMGESDDSILRL 72
>RS21_PIG (P63221) 40S ribosomal protein S21
Length = 83
Score = 93.2 bits (230), Expect = 1e-19
Identities = 41/72 (56%), Positives = 58/72 (79%), Gaps = 1/72 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDE-SGVYNGQFSTYALCGYIR 59
MQN+ G+ +LY+PRKCSA+NR+I AKDHAS+Q+N+ +D+ +G +NGQF TYA+CG IR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 60 AQGDADSAIDRL 71
G++D +I RL
Sbjct: 61 RMGESDDSILRL 72
>RS21_HUMAN (P63220) 40S ribosomal protein S21
Length = 83
Score = 93.2 bits (230), Expect = 1e-19
Identities = 41/72 (56%), Positives = 58/72 (79%), Gaps = 1/72 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDE-SGVYNGQFSTYALCGYIR 59
MQN+ G+ +LY+PRKCSA+NR+I AKDHAS+Q+N+ +D+ +G +NGQF TYA+CG IR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQMNVAEVDKVTGRFNGQFKTYAICGAIR 60
Query: 60 AQGDADSAIDRL 71
G++D +I RL
Sbjct: 61 RMGESDDSILRL 72
>RS21_MOUSE (Q9CQR2) 40S ribosomal protein S21
Length = 83
Score = 92.0 bits (227), Expect = 2e-19
Identities = 40/72 (55%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDE-SGVYNGQFSTYALCGYIR 59
MQN+ G+ +LY+PRKCSA+NR+I AKDHAS+Q+N+ +D +G +NGQF TY +CG IR
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIAAKDHASIQMNVAEVDRTTGRFNGQFKTYGICGAIR 60
Query: 60 AQGDADSAIDRL 71
G++D +I RL
Sbjct: 61 RMGESDDSILRL 72
>RS21_SCHPO (P05764) 40S ribosomal protein S21 (S28)
Length = 87
Score = 87.4 bits (215), Expect = 6e-18
Identities = 40/72 (55%), Positives = 57/72 (78%), Gaps = 1/72 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESG-VYNGQFSTYALCGYIR 59
M+NE GQ+ +LY+PRKCSATNR+I AKDHASVQIN+ +D G G+ +TYA+ G++R
Sbjct: 1 MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVDAEGRQIPGEKTTYAISGFVR 60
Query: 60 AQGDADSAIDRL 71
++G++D I+RL
Sbjct: 61 SKGESDDCINRL 72
>RS21_NEUCR (O93798) 40S ribosomal protein S21 (CRP7)
Length = 87
Score = 82.4 bits (202), Expect = 2e-16
Identities = 37/75 (49%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESG-VYNGQFSTYALCGYIR 59
M+N+ G+I +LY+PRKCSAT R+I +KDH S QI I +DE+G G+ YAL G++R
Sbjct: 1 MENDRGEIVDLYVPRKCSATGRIIKSKDHGSCQITIAKVDENGRAIQGENIIYALSGFVR 60
Query: 60 AQGDADSAIDRLWQK 74
A G++D +++RL Q+
Sbjct: 61 AMGESDDSLNRLAQR 75
>RS21_CAEEL (P49197) 40S ribosomal protein S21
Length = 88
Score = 80.1 bits (196), Expect = 9e-16
Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 2/76 (2%)
Query: 1 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLD-ESG-VYNGQFSTYALCGYI 58
MQN+ GQ ELY+PRKCS++NR+I KDHASVQI+ +D E+G + G+ + YA+CG I
Sbjct: 1 MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60
Query: 59 RAQGDADSAIDRLWQK 74
R G++D AI RL QK
Sbjct: 61 RRMGESDDAILRLAQK 76
>YO07_BPL2 (P42542) Hypothetical 14.0 kDa protein (ORF7)
Length = 125
Score = 27.7 bits (60), Expect = 5.5
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 2 QNEEGQITELYIPRKCSATNRLITAKDHASVQI-NIGHLDESGVYNGQFSTYALCG 56
QN+E +I+EL+ A N A++QI + +LD++ + FST + G
Sbjct: 26 QNQENEISELFETGSVDAQNIFNEGNADATIQIVELPNLDKATIKLALFSTLSCIG 81
>VPP_BPMU (P08558) 43 kDa tail protein (gpP)
Length = 379
Score = 27.3 bits (59), Expect = 7.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 25 TAKDHASVQINIGHLDESGVYNGQFSTYALCGYIRAQGDADSAID 69
TA D + N+ LD + +FS Y + GY RA G ID
Sbjct: 180 TATDELVLGENLLTLDFEEDFRDRFSEYTVKGYARANGAEGDDID 224
>LCCI_LEUGE (P34035) Probable leucocin A immunity protein
Length = 113
Score = 27.3 bits (59), Expect = 7.2
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 2 QNEEGQITEL--YIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGQF 49
+N E I L YI R ++TNR+ +KD +V I +G + + NGQ+
Sbjct: 49 KNVEALINRLVNYI-RITASTNRIKFSKDEEAVIIELGVIGQKAGLNGQY 97
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.315 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,358,332
Number of Sequences: 164201
Number of extensions: 309795
Number of successful extensions: 536
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 16
length of query: 82
length of database: 59,974,054
effective HSP length: 58
effective length of query: 24
effective length of database: 50,450,396
effective search space: 1210809504
effective search space used: 1210809504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0030.2