BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0028b.4
(1177 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
HELY_MYCTU (Q10701) Probable helicase helY (EC 3.6.1.-) 322 3e-87
HELY_MYCLE (Q9ZBD8) Probable helicase helY (EC 3.6.1.-) 319 2e-86
SKI2_YEAST (P35207) Antiviral protein SKI2 311 5e-84
SKIW_HUMAN (Q15477) Helicase SKI2W (Helicase-like protein) (HLP) 274 1e-72
MTR4_YEAST (P47047) ATP-dependent RNA helicase DOB1 (mRNA transp... 269 3e-71
YH2O_CAEEL (Q23223) Putative helicase W08D2.7 (EC 3.6.1.-) 261 6e-69
YE02_SCHPO (O13799) Putative helicase C17H9.02 (EC 3.6.1.-) 253 2e-66
YDVG_SCHPO (O14232) Putative helicase C6F12.16c (EC 3.6.1.-) 253 2e-66
K052_HUMAN (P42285) Protein KIAA0052 (Fragment) 249 3e-65
HELS_SULSO (Q97VY9) Putative ski2-type helicase (EC 3.6.1.-) 149 6e-35
HELS_PYRHO (O59025) Putative ski2-type helicase (EC 3.6.1.-) 101 1e-20
HELS_PYRFU (O73946) Putative ski2-type helicase (EC 3.6.1.-) 95 1e-18
HELS_THEAC (Q9HJX7) Putative ski2-type helicase (EC 3.6.1.-) 95 1e-18
HELS_AERPE (Q9YFQ8) Putative ski2-type helicase (EC 3.6.1.-) 95 1e-18
HELS_SULTO (Q974S1) Putative ski2-type helicase (EC 3.6.1.-) 94 2e-18
HELS_THEVO (Q97AI2) Putative ski2-type helicase (EC 3.6.1.-) 94 2e-18
HELS_PYRAB (Q9V0A9) Putative ski2-type helicase (EC 3.6.1.-) 92 1e-17
HELS_METTH (O26901) Putative ski2-type helicase (EC 3.6.1.-) 90 4e-17
HELS_METAC (Q8TL39) Putative ski2-type helicase (EC 3.6.1.-) 90 4e-17
HELS_METMA (Q8PZR7) Putative ski2-type helicase (EC 3.6.1.-) 89 9e-17
>HELY_MYCTU (Q10701) Probable helicase helY (EC 3.6.1.-)
Length = 906
Score = 322 bits (826), Expect = 3e-87
Identities = 214/618 (34%), Positives = 310/618 (49%), Gaps = 88/618 (14%)
Query: 144 EIIDVDELASVYDFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRR 203
E+ ++D + F +D FQ+ A A RG V+V APT +GKT++ E A +A G +
Sbjct: 3 ELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSK 62
Query: 204 IFYTTPLKALSNQKFREFRETFGDSYVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGN 263
FYTTPLKALSNQK + +G +GLLTGD +VN +A V++MTTE+LRNMLY
Sbjct: 63 CFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLY----- 117
Query: 264 VSSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGW 323
+ L + +V+DEVH+L+D RG VWEE+++ P +V+++ LSATV+N +E GW
Sbjct: 118 --ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELVTSSKRPVPLTWHFSMKNSLLPLLDEKGTRMNRKLSLNYLQLQAAGYKPY 383
I + G T +V RPVPL H + + L D + + +N L+ ++
Sbjct: 176 IQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRRE 235
Query: 384 KD---DWS-RKRNARKRGYRMSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEP 439
D DW R+R + + G+ R P++I L +
Sbjct: 236 ADRMADWQPRRRGSGRPGF-----------------------YRPPGRPEVIAKL---DA 269
Query: 440 RDMLPAIWFIFSRKGCDAAVQYIEDCKLLDECEKSEVELALKRFRIQYPDAV-------- 491
+LPAI F+FSR GCDAAV +C +S + L + R + + +
Sbjct: 270 EGLLPAITFVFSRAGCDAAVT---------QCLRSPLRLTSEEERARIAEVIDHRCGDLA 320
Query: 492 -RETAV-------KGLLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMP 543
+ AV +GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMP
Sbjct: 321 DSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMP 380
Query: 544 ARTAVISSLSKRIDSGRRPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVL 603
ART V+ L K PL+ E Q+ GRAGRRGID GH V+I P E +
Sbjct: 381 ARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLA 440
Query: 604 FAGLEPLVSQFTASYGMVLNLLSGVKAIHRSNESDDMRQSTGGRTLEDARKLVEQSFGNY 663
PL S F SY M +NL +HR + A +L+EQSF Y
Sbjct: 441 STRTFPLRSSFAPSYNMTINL------VHRMGP-------------QQAHRLLEQSFAQY 481
Query: 664 VSSNVMLAAKEELKKNEKEIELLMSEITDEAIDRKSRKALSQKQYKEIAELQEDLRAEKR 723
+ ++ +++ + ++ EI E + + ++EL+ RA+ R
Sbjct: 482 QADRSVVGLVRGIERGNR----ILGEIAAELGGSDAPILEYARLRARVSELE---RAQAR 534
Query: 724 VRTALRRQMEAKRISALK 741
RRQ ++AL+
Sbjct: 535 ASRLQRRQAATDALAALR 552
Score = 39.7 bits (91), Expect = 0.049
Identities = 50/217 (23%), Positives = 90/217 (41%), Gaps = 11/217 (5%)
Query: 960 EKIKRLKTRSKRLTNRIEQIEPSGWKEFMQVSNVIHETRALD--INTHVIFPLGETAAAI 1017
E+ R++ + +L ++ S + F + ++ E +D V+ G A I
Sbjct: 681 ERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARI 740
Query: 1018 RGENELWLAMVLRSKILVGLKPPQLAAVCAGLVSEGIKVRPWKNNSFIYE-PSATVVNCI 1076
E++L +A LR+ GLKP +LA V + +V E + + F + P+ + +
Sbjct: 741 YSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYE-TRGGDGQGAPFGADVPTPRLRQAL 799
Query: 1077 GLLGEQRSALLAIQEKHGVTISCCLDTQFCGMVEAW------ASGLTWREIM-MDCAMDD 1129
+ L A ++ H +T S D F ++ W A+ L ++ +
Sbjct: 800 TQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLA 859
Query: 1130 GDLARLLRRTIDLLAQIPKLADIDPLLQRNARAASDV 1166
GD R R+ +DLL Q+ A L RA D+
Sbjct: 860 GDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDI 896
>HELY_MYCLE (Q9ZBD8) Probable helicase helY (EC 3.6.1.-)
Length = 920
Score = 319 bits (818), Expect = 2e-86
Identities = 223/615 (36%), Positives = 315/615 (50%), Gaps = 89/615 (14%)
Query: 147 DVDELA---SVYDFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRR 203
D+ ELA + F +D FQ+ A A RG V+V APT +GKT++ E A +A G +
Sbjct: 3 DLAELARFTAELPFSLDDFQQRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGGK 62
Query: 204 IFYTTPLKALSNQKFREFRETFGDSYVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGN 263
FYTTPLKALSNQK+ + +G + +GLLTGD +VN D+ V++MTTE+LRNMLY
Sbjct: 63 CFYTTPLKALSNQKYTDLTARYGRNRIGLLTGDQSVNGDSPVVVMTTEVLRNMLYAD--- 119
Query: 264 VSSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGW 323
S + GL +V V+DEVH+++D RG VWEE++++ P +V+++ LSATV+N +E GW
Sbjct: 120 -SFALQGLSHV---VMDEVHFIADRMRGPVWEEVILHLPDDVRMVSLSATVSNAEEFGGW 175
Query: 324 IGQIHGKTELVTSSKRPVPLTWHFSMKNSLLPLLDEKGTRMNRKLSLNYLQ-LQAAGYKP 382
+ + G T +V RPVPL H + L L D ++ N L+ +
Sbjct: 176 VQTVRGDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYDSNVDQSPVNPNLLRHIAHCREAD 235
Query: 383 YKDDW--SRKRNARKRGYRMSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPR 440
DW R+R R G R + RSL++ + AI ++
Sbjct: 236 RMSDWRNPRRRAGRGSGVRPRF--------YRSLARPEVIAI--------------LDAE 273
Query: 441 DMLPAIWFIFSRKGCDAAVQYIEDCKLLDECEKSEVELALKRFRIQYPDAV--------- 491
+LPAI F+FSR GCDAAVQ +C +S + L + R Q + +
Sbjct: 274 GLLPAITFVFSRFGCDAAVQ---------QCLRSPLRLTSEEERAQIAEVIDHRCGDLAD 324
Query: 492 RETAV-------KGLLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPA 544
+ AV +GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPA
Sbjct: 325 ADLAVLGYYEWREGLLRGLAAHHAGMLPAFRHAVEELFTAGLVKAVFATETLALGINMPA 384
Query: 545 RTAVISSLSKRIDSGRRPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNE---GAEECCK 601
RT V+ L K PL+ E Q+ GRAGRRGID GH V+I P+E G
Sbjct: 385 RTVVLERLVKFNGKQHVPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPSEDTSGPSAVAG 444
Query: 602 VLFAGLEPLVSQFTASYGMVLNLLSGVKAIHRSNESDDMRQSTGGRTLEDARKLVEQSFG 661
+ A PL S F SY M +NL+ + E A L+EQSF
Sbjct: 445 LASARTFPLRSSFVPSYNMTINLVHWMSP-------------------ERAHALLEQSFA 485
Query: 662 NYVSSNVMLAAKEELKKNEKEIELLMSEITD------EAIDRKSRKALSQKQYKEIAELQ 715
Y + ++ +++ + + + SE+ E ++R A ++ + LQ
Sbjct: 486 QYQADRSVVGLVRGIERCTQVLGDISSELGGPDAPILEYARLRARIAEMERAQSFVFRLQ 545
Query: 716 EDLRAEKRVRTALRR 730
+A V ALRR
Sbjct: 546 RK-QAANDVLAALRR 559
Score = 44.3 bits (103), Expect = 0.002
Identities = 40/163 (24%), Positives = 67/163 (40%), Gaps = 7/163 (4%)
Query: 1011 GETAAAIRGENELWLAMVLRSKILVGLKPPQLAAVCAGLVSEGIKVRPWKNNSFIYEPSA 1070
G A I E++L +A LR+ GL+P +LAAV + ++ E P+
Sbjct: 748 GRLLARIYSESDLLVAECLRTGAWAGLRPAELAAVVSAVLYETRGDDGPGGPVDAEAPTP 807
Query: 1071 TVVNCIGLLGEQRSALLAIQEKHGVTISCCLDTQFCGMVEAWASGLTWREIMM------- 1123
+ + + L A +++H + +S D F G++ WA ++
Sbjct: 808 RLRQALQHTSRLSATLRADEQRHRIALSREPDDGFVGVIYCWARTGDLAAVLAAADASGN 867
Query: 1124 DCAMDDGDLARLLRRTIDLLAQIPKLADIDPLLQRNARAASDV 1166
+ GD R R+ +DLL Q+ A L RA +DV
Sbjct: 868 GAPLSAGDFVRWCRQVLDLLDQLRNAAPEPDLRATAKRAINDV 910
>SKI2_YEAST (P35207) Antiviral protein SKI2
Length = 1287
Score = 311 bits (798), Expect = 5e-84
Identities = 216/666 (32%), Positives = 342/666 (50%), Gaps = 70/666 (10%)
Query: 81 DDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDE--GEAFDASARREEFKWQRVEKLCNEV 138
++E+ + EE ++ ++ AD DD DE D + K V+K V
Sbjct: 246 EEEKSAKSISEEIMEEATEETTADNADDAEIDELLPIGIDFGRTKPVSKSVPVKKEWAHV 305
Query: 139 REFGAEIIDVDEL----ASVYDFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIAEAAA 194
+ +I + DEL A + F +D FQ+ AV +G SV V+A TS+GKT++AE A
Sbjct: 306 VDLNHKIENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAI 365
Query: 195 VATVARGRRIFYTTPLKALSNQKFREFRETFGDSYVGLLTGDSAVNKDAQVLIMTTEILR 254
+ YT+P+KALSNQKFR+F+ETF D +GL+TGD +N DA LIMTTEILR
Sbjct: 366 AMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTTEILR 425
Query: 255 NMLYQSVGNVSSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATV 314
+MLY+ + +V+ ++ DEVHY++D RG VWEE++I P+ V+ I LSATV
Sbjct: 426 SMLYRGADLIR-------DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATV 478
Query: 315 ANPDELAGWIGQIHGKTELVTSS-KRPVPLTWHFSMKNSLLPLLDEKG--TRMNRKLSLN 371
N E A WIG+ K V S+ KRPVPL + K L+P++++ N +
Sbjct: 479 PNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKE 538
Query: 372 YLQLQAAGYKPYKDDWSRKRNARKRGYRMSYDSDESMFEQRSLSKNNIN----------- 420
L ++A P K D + + + RG R ++ + + + ++ N
Sbjct: 539 ILNGESAKGAPSKTD-NGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIG 597
Query: 421 ----------AIRRSQVPQIIDTLWHIEPRDMLPAIWFIFSRKGCDAAVQYIEDCKLLDE 470
+ P+I++ ++ R++LP + F+FS+K C+ ++E +
Sbjct: 598 SNKRKFFTQDGPSKKTWPEIVN---YLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNN 654
Query: 471 CEKSE----VELALKRFRIQYPDAVRETAVKGLLQ-GVAAHHAGCLPLWKAFIEELFQKG 525
EKS+ +E ++ R + + D + + LL+ G+A HH G LP+ K IE LF KG
Sbjct: 655 KEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKG 714
Query: 526 LVKVVFATETLAAGINMPARTAVISSLSKRIDSGRRPLSSNELLQMAGRAGRRGIDESGH 585
+KV+FATET A G+N+P RT + SS+ K +G R L+ E QMAGRAGRRG+D +G
Sbjct: 715 FIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGT 774
Query: 586 VVLIQTPNEGAEECCKVLFAGLEP-LVSQFTASYGMVLNLLSGVKAIHRSNESDDMRQST 644
V+++ + + K + G+ L SQF +Y M+LNLL ++A+
Sbjct: 775 VIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLR-IEALR------------ 821
Query: 645 GGRTLEDARKLVEQSFGNYVSSNVMLAAKEELKKNEKE---IELLMSEITDEAIDRKSRK 701
++++ SF + ++++K ++E IE EI D I++
Sbjct: 822 -------VEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEICDNDIEKFLEL 874
Query: 702 ALSQKQ 707
L+ K+
Sbjct: 875 MLAYKE 880
Score = 32.3 bits (72), Expect = 7.8
Identities = 38/156 (24%), Positives = 66/156 (41%), Gaps = 23/156 (14%)
Query: 993 VIHETRALDINTHVIFPLGETAAAIRGENELWLAMVLRSKILVGLKPPQLAAVCAGLVSE 1052
V+ +T +D N +V+ G A I EL L ++ L +P ++ A+ + V E
Sbjct: 1098 VLKDTEFIDQNHNVLLK-GRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYE 1156
Query: 1053 GIKVRPWKNNSFIYEPSATVVNCIGLLGEQR-----SALLAIQEKHGVTISC----CLDT 1103
G K R E +V G+QR +L + H + ++ LD
Sbjct: 1157 G-KTR---------EEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDR 1206
Query: 1104 QFCGMVEA---WASGLTWREIMMDCAMDDGDLARLL 1136
+ M+ WA GL+++EIM +G + R++
Sbjct: 1207 KRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVI 1242
>SKIW_HUMAN (Q15477) Helicase SKI2W (Helicase-like protein) (HLP)
Length = 1246
Score = 274 bits (700), Expect = 1e-72
Identities = 186/495 (37%), Positives = 259/495 (51%), Gaps = 56/495 (11%)
Query: 148 VDELASVYDFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYT 207
+ + A + F D FQ+ A+ R SV V+A TS+GKT++AE A R YT
Sbjct: 300 IPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYT 359
Query: 208 TPLKALSNQKFREFRETFGDSYVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSS 267
+P+KALSNQKFR+FR TFGD VGLLTGD ++ +A LIMTTEILR+MLY S
Sbjct: 360 SPIKALSNQKFRDFRNTFGD--VGLLTGDVQLHPEASCLIMTTEILRSMLY-------SG 410
Query: 268 RSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQI 327
+ +++ ++ DEVHY++D+ RG VWEE++I P V +I LSATV N E A WIG++
Sbjct: 411 SDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRL 470
Query: 328 HGKTELVTSS-KRPVPLTWHFSMKNS------LLPLLDEKGTRMNRKLSLNYLQLQAAGY 380
+ V S+ RPVPL + NS L LLD +G GY
Sbjct: 471 KRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGA------------FHTKGY 518
Query: 381 KPYKDDWSRKRNARKRGYRMSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPR 440
Y ++K K + ++ + + + + + L + R
Sbjct: 519 --YAAVEAKKERMSK--HAQTFGAKQPTHQGGPAQDRGV----------YLSLLASLRTR 564
Query: 441 DMLPAIWFIFSRKGCDAAVQYIEDCKLLDECEKSEVELALKRFRI-------QYPDAVRE 493
LP + F FSR CD + L EKSE+ L L+R Q P +
Sbjct: 565 AQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHM 624
Query: 494 TAVKGLLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLS 553
+ + L +G+ HH+G LP+ K +E LF +GLVKV+FATET A G+NMPART V S+
Sbjct: 625 SEL--LNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMR 682
Query: 554 KRIDSGRRPLSSNELLQMAGRAGRRGIDESGHVVLI---QTPNEGAEECCKVLFAGLEPL 610
K S R L E +QMAGRAGRRG+D +G V+L+ + P + +++ L
Sbjct: 683 KHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPE--MADLHRMMMGKPSQL 740
Query: 611 VSQFTASYGMVLNLL 625
SQF +Y M+LNLL
Sbjct: 741 QSQFRLTYTMILNLL 755
>MTR4_YEAST (P47047) ATP-dependent RNA helicase DOB1 (mRNA transport
regulator MTR4)
Length = 1073
Score = 269 bits (688), Expect = 3e-71
Identities = 192/607 (31%), Positives = 299/607 (48%), Gaps = 70/607 (11%)
Query: 59 PTSSSLPTFSDAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDD------------------ 100
PT S+ +D D D D + E E+EE+E+++ ++
Sbjct: 18 PTDSNGEKNADTNVGDTPDHTQDKKHGLEEEKEEHEENNSENKKIKSNKSKTEDKNKKVV 77
Query: 101 --VAADEYDDEVPDEGEAFDASARREEFKWQRVEK--LCNEVREFGAEIIDVDEL----- 151
V AD ++ E E +A E + ++ K L ++VR A + D
Sbjct: 78 VPVLADSFEQEASREVDASKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEH 137
Query: 152 -----ASVYDFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFY 206
A Y F +D FQ A+ RG SV+VSA TS+GKT++AE A ++ +R+ Y
Sbjct: 138 KRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIY 197
Query: 207 TTPLKALSNQKFREFRETFGDSYVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSS 266
T+P+KALSNQK+RE FGD VGL+TGD +N DA L+MTTEILR+MLY+
Sbjct: 198 TSPIKALSNQKYRELLAEFGD--VGLMTGDITINPDAGCLVMTTEILRSMLYRG------ 249
Query: 267 SRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQ 326
+ V ++ DEVHY+ D RG VWEE +I P +V+ + LSAT+ N E A WI +
Sbjct: 250 -SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICK 308
Query: 327 IHGKT-ELVTSSKRPVPLTWHF--SMKNSLLPLLDEKGTRMNRKLSLNYLQLQAAGYKPY 383
IH + +V ++ RP PL + + + + ++DEK T N+ + A+
Sbjct: 309 IHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREE----NFQKAMASISNQI 364
Query: 384 KDDWSRKRNARKRGYRMSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRDML 443
DD + + K+G ++ + + + +I+ +W +
Sbjct: 365 GDDPNSTDSRGKKG--------------QTYKGGSAKGDAKGDIYKIVKMIWK---KKYN 407
Query: 444 PAIWFIFSRKGCDAAVQYIEDCKLLDECEKSEVELALKRFRIQYPDAVRETA-VKGLL-- 500
P I F FS++ C+ + + EK + P+ RE +K +L
Sbjct: 408 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPL 467
Query: 501 --QGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSKRIDS 558
+G+ HH+G LP+ K IE LFQ+G +KV+FATET + G+NMPA+T V +S+ K
Sbjct: 468 LRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 527
Query: 559 GRRPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTASY 618
R +S E +QM+GRAGRRG+D+ G V+++ + ++ + L S F Y
Sbjct: 528 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGY 587
Query: 619 GMVLNLL 625
M+LNL+
Sbjct: 588 NMILNLM 594
>YH2O_CAEEL (Q23223) Putative helicase W08D2.7 (EC 3.6.1.-)
Length = 1026
Score = 261 bits (668), Expect = 6e-69
Identities = 177/484 (36%), Positives = 254/484 (51%), Gaps = 47/484 (9%)
Query: 150 ELASVYDFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTP 209
E A Y F++D FQ+ A+ SV+VSA TS+GKT++A A + +R+ YT+P
Sbjct: 117 EPAKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSP 176
Query: 210 LKALSNQKFREFRETFGDSYVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSSRS 269
+KALSNQK+RE E F D VGL+TGD +N DA L+MTTEILR+MLY+
Sbjct: 177 IKALSNQKYRELEEEFKD--VGLMTGDVTLNPDASCLVMTTEILRSMLYRG-------SE 227
Query: 270 GLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHG 329
+ V +V DE+HY+ D RG VWEE +I K ++ LSAT+ N + A W+ I
Sbjct: 228 IMKEVGWVVYDEIHYMRDKERGVVWEETIILMSKNIKQAFLSATIPNARQFAQWVASIKQ 287
Query: 330 K-TELVTSSKRPVPLT-WHFSMKNS-LLPLLDEKGTRMNRKLSLNYLQLQAAGYKPYKDD 386
+ +V + RP PL W + + + +++ KG K L AG D
Sbjct: 288 QPVNVVYTDYRPTPLQHWIYPVGGEGMYEVVNVKGEFREDKFRDAMSGLATAG------D 341
Query: 387 WSRKRNARKRGYRMSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRDMLPAI 446
+ N R+ G DS N+ I RS + D L I
Sbjct: 342 SAGSFNKRRTGGGTQGDS-------------NVLKIIRS-----------VASNDGLNCI 377
Query: 447 WFIFSRKGCDAAVQYIEDCKLLDECEKSEVELALKRFRIQY-PDAVRETAVKGLL----Q 501
F FSRK C++ ++D + EK V+ + Q P+ + + +L +
Sbjct: 378 VFSFSRKECESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNILPLLRR 437
Query: 502 GVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSKRIDSGRR 561
G+ HH+G +P+ K IE LF +GLVKV+FATET + G+NMPART V +S K S R
Sbjct: 438 GIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDGSDNR 497
Query: 562 PLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTASYGMV 621
++S E +QMAGRAGRRG D+ G V+L+ A++ +++ +PL SQF +Y MV
Sbjct: 498 YITSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIKGATDPLNSQFRLTYNMV 557
Query: 622 LNLL 625
LNL+
Sbjct: 558 LNLM 561
Score = 32.7 bits (73), Expect = 6.0
Identities = 45/231 (19%), Positives = 91/231 (38%), Gaps = 24/231 (10%)
Query: 921 AIEQYKDQRNKVSRLKKRISRTEGYKEYNKIIDGVKFIEEKIKRLKTRSKRLTNRIEQIE 980
A E+ + R + + KR + + K++ + D VK ++ LK K + + + E
Sbjct: 780 AREKSLEGRLETHSMTKRDNMKDLKKQFEQKQDAVK----ELNALKAERKSVQSTLHLEE 835
Query: 981 PSGWKEFMQVSNVIHETRALDINTHVIFPLGETAAAIRGENELWLAMVLRSKILVGLKPP 1040
+ K ++ + AL + G A + +EL L +L I L
Sbjct: 836 LNNRKRVLRRLGYLGNDDALVLK-------GSVACELSASDELILTEMLLKGIFNTLDVA 888
Query: 1041 QLAAVCAGLVSEGIKVRPWKNNSFIYEPSATVVNCIGLLGEQRSALLAIQEKHGVTIS-- 1098
Q AA+ + V + P + + + C+ L EQ + + + + +
Sbjct: 889 QTAALLSCFVFQDKCAAP--------KLATELQTCLSELHEQARNVAKVSNECKMEVMED 940
Query: 1099 ---CCLDTQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLAQI 1146
+ +V W +G T+ EI+ + +G + R LRR ++L ++
Sbjct: 941 KYVSSFNPGLMDVVYQWVNGATFSEIVKTTDVFEGSIIRTLRRLEEVLREM 991
>YE02_SCHPO (O13799) Putative helicase C17H9.02 (EC 3.6.1.-)
Length = 1030
Score = 253 bits (647), Expect = 2e-66
Identities = 179/491 (36%), Positives = 255/491 (51%), Gaps = 56/491 (11%)
Query: 146 IDVDELASVYDFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIF 205
I D A Y F +D FQ A++ R SV+VSA TS+GKT+IAE A + +R+
Sbjct: 113 IPSDPPAKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVI 172
Query: 206 YTTPLKALSNQKFREFRETFGDSYVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVS 265
YT+P+K+LSNQK+RE FGD VGL+TGD ++N A LIMTTEILR MLY+
Sbjct: 173 YTSPIKSLSNQKYRELLSEFGD--VGLMTGDVSINPSASCLIMTTEILRAMLYK------ 224
Query: 266 SSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIG 325
+ + + ++ DEVHY+ D RG VWEE +I P ++ I LSAT+ N + A WI
Sbjct: 225 -NSEIMHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNALQFARWIS 283
Query: 326 QIHGK-TELVTSSKRPVPLTWHF---SMKNSLLPLLDEKGTRMNRKLSLNYLQLQAAGYK 381
+IH + +V + RP PL HF + + L+DEK N+ + N+ ++
Sbjct: 284 EIHKQPCHVVYTDYRPTPLQ-HFIYPQGADGIYMLVDEK----NKFKTENFKKVLEV--- 335
Query: 382 PYKDDWSRKRNARKRGYRMSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRD 441
D +R+ N Y ++ S + IN + ++
Sbjct: 336 --LDHSTRQEN---------YSKSSKKVKKSSSLERIINMVLSNRYD------------- 371
Query: 442 MLPAIWFIFSRKGCDAAVQYIEDCKLLDECEKSEVELALKRFRIQYPDAVR-----ETAV 496
P I F FS+K C+ L D K V Q + R E
Sbjct: 372 --PIIVFCFSKKECEINAHQFGKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQFEEMR 429
Query: 497 KGLLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSKRI 556
LL+G+ HH+G LP+ K +E LFQ+GLV+++FATET + G+NMPART + + K
Sbjct: 430 SLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFS 489
Query: 557 DSGRRPLSSNELLQMAGRAGRRGIDESG--HVVLIQTPNEGAEECCKVLFAGLEPLVSQF 614
+ R L+S E +QM+GRAGRRGID G V+L Q+ +E A C ++ + L S F
Sbjct: 490 GNNFRWLTSGEYMQMSGRAGRRGIDTKGLSIVILDQSIDEQAARC--LMNGQADVLNSAF 547
Query: 615 TASYGMVLNLL 625
SYGM+LNL+
Sbjct: 548 HLSYGMILNLM 558
>YDVG_SCHPO (O14232) Putative helicase C6F12.16c (EC 3.6.1.-)
Length = 1117
Score = 253 bits (647), Expect = 2e-66
Identities = 171/485 (35%), Positives = 254/485 (52%), Gaps = 45/485 (9%)
Query: 152 ASVYDFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLK 211
A Y F +D FQ +++ R SV+VSA TS+GKT++AE A ++ +R+ YT+P+K
Sbjct: 192 ARTYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIK 251
Query: 212 ALSNQKFREFRETFGDSYVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSSRSGL 271
ALSNQK+RE FGD VGL+TGD +N DA L+MTTEILR+MLY+ +
Sbjct: 252 ALSNQKYRELLAEFGD--VGLMTGDVTINPDATCLVMTTEILRSMLYR-------GSEVM 302
Query: 272 VNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGK- 330
V ++ DE+HY+ D RG VWEE +I P + + LSAT+ N + A WI +IH +
Sbjct: 303 REVAWVIFDEIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPNAMQFAEWITKIHRQP 362
Query: 331 TELVTSSKRPVPLTWHF--SMKNSLLPLLDEKGTRMNRKLSLNYLQLQAAGYKPYKDD-- 386
+V + RP PL + S + + ++DEK N+ + +A + DD
Sbjct: 363 CHVVYTDFRPTPLQHYLFPSGSDGIHLVVDEKSNFREE----NFQRAMSALMEKQGDDPA 418
Query: 387 -WSRKRNARKRGYRMSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRDMLPA 445
+ K NA+K K + S + +I+ I ++ P
Sbjct: 419 AMATKGNAKK----------------GKTGKGGVKG--PSDIYKIVKM---IMVKNYNPV 457
Query: 446 IWFIFSRKGCDAAVQYIEDCKLLDECEKSEVELALKRFRIQYPDAVRET-----AVKGLL 500
I F FS++ C+A + + D+ E+ V Q + RE + L
Sbjct: 458 IVFSFSKRECEALALQMSKLDMNDQTERDLVTTIFNNAVNQLSEKDRELPQIEHILPLLR 517
Query: 501 QGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSKRIDSGR 560
+G+ HH+G LP+ K IE LFQ+GL+KV+FATET + G+NMPA+T V +++ K
Sbjct: 518 RGIGIHHSGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTF 577
Query: 561 RPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTASYGM 620
R +S E +QM+GRAGRRG+D+ G V+L+ +L + L S F SY M
Sbjct: 578 RWISGGEYIQMSGRAGRRGLDDRGIVILMIDEKMDPPVAKSMLKGEADRLDSAFHLSYNM 637
Query: 621 VLNLL 625
+LNLL
Sbjct: 638 ILNLL 642
>K052_HUMAN (P42285) Protein KIAA0052 (Fragment)
Length = 1046
Score = 249 bits (636), Expect = 3e-65
Identities = 172/486 (35%), Positives = 242/486 (49%), Gaps = 48/486 (9%)
Query: 148 VDELASVYDFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYT 207
V + A Y F +D FQR A+Q SV+VSA TS+GKT+ AE A + +R+ +T
Sbjct: 133 VGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT 192
Query: 208 TPLKALSNQKFREFRETFGDSYVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSS 267
+P+KALSNQK+RE E F D VGL+TGD +N A L+MTTEILR+MLY+
Sbjct: 193 SPIKALSNQKYREMYEEFQD--VGLMTGDVTINPTASCLVMTTEILRSMLYR-------G 243
Query: 268 RSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQI 327
+ V ++ DE+HY+ D RG VWEE +I P V + LSAT+ N + A WI +
Sbjct: 244 SEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHL 303
Query: 328 HGK-TELVTSSKRPVPLTWHF--SMKNSLLPLLDEKGTRMNRKLSLNYLQLQAAGYKPYK 384
H + ++ + RP PL + + + L ++DE G + L+ AG
Sbjct: 304 HKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKG 363
Query: 385 DDWSRKRNARKRGYRMSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRDMLP 444
D RK + +N+ I + I R+ P
Sbjct: 364 DQKGRKGGTK--------------------GPSNVFKIVKM-----------IMERNFQP 392
Query: 445 AIWFIFSRKGCDAAVQYIEDCKLLDECEKSEVELALKRFRIQYPDAVR-----ETAVKGL 499
I F FS+K C+A + + EK VE D + E + L
Sbjct: 393 VIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLL 452
Query: 500 LQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSKRIDSG 559
+G+ HH G LP+ K IE LF +GL+K +FATET A GINMPART + ++ K
Sbjct: 453 KRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKD 512
Query: 560 RRPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTASYG 619
R +SS E +QM+GRAGRRG+D+ G V+L+ ++L +PL S F +Y
Sbjct: 513 FRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYN 572
Query: 620 MVLNLL 625
MVLNLL
Sbjct: 573 MVLNLL 578
>HELS_SULSO (Q97VY9) Putative ski2-type helicase (EC 3.6.1.-)
Length = 708
Score = 149 bits (375), Expect = 6e-35
Identities = 160/619 (25%), Positives = 274/619 (43%), Gaps = 115/619 (18%)
Query: 168 QAFLRGSSVVVSAPTSSGKTLIAEAAAVATVAR-GRRIFYTTPLKALSNQKFREFRETFG 226
+ L G+ +++++PT SGKTLIAE ++ + + G + Y TPL+AL+N+K+ F++
Sbjct: 34 KGLLDGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWES 93
Query: 227 DSYVGLLTGDSAVNKDAQV----LIMTTEILRNMLYQSVGNVSSSRSGLVN-VDVIVLDE 281
+ +T DA + +I+TT Y+ + ++ R +N + VLDE
Sbjct: 94 IGFKVAMTSGDYDTDDAWLKNYDIIITT-------YEKLDSLWRHRPDWLNEANYFVLDE 146
Query: 282 VHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPV 341
+HYL+D RG V E + I K L+ LSAT++N ++A W+G E V ++ RPV
Sbjct: 147 LHYLNDPERGPVVESVTIRA-KRRNLLALSATISNYKQIAKWLG-----AEPVATNWRPV 200
Query: 342 PLTWHFSMKNSLLPLLDEKGTRMNRKLSLNYLQLQAAGYKPYKDDWSRKRNARKRGYRMS 401
PL M+ + P +K Y L ++D+ +RK +
Sbjct: 201 PL-----MEGVMYPERKKK----------EYTIL-------FRDNTARKVHG-------- 230
Query: 402 YDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRDMLPAIWFIFSRKGCDA-AVQ 460
D + SLSKN + R+ SRK ++ A++
Sbjct: 231 -DDAIIAYTLDSLSKNGQVLVFRN-------------------------SRKMAESTALK 264
Query: 461 YIEDCKLLDECEKSEVELALKRFRIQYPDAVRETAVKGLL-QGVAAHHAGCLPLWKAFIE 519
+ EK+ E+ + I+ + + +K L+ +GVA HHAG + IE
Sbjct: 265 IANYMNFVSLDEKAISEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDIIE 324
Query: 520 ELFQKGLVKVVFATETLAAGINMPARTAVISSL---SKRIDSGRRPLSSNELLQMAGRAG 576
E F+K +KV+ AT TLAAG+N+PART +I + +++I + E QM+GRAG
Sbjct: 325 ESFRKRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNRKIVGYYDEIPVMEYKQMSGRAG 384
Query: 577 RRGIDESGHVVLIQTPNEGAEECC-KVLFAGLEPLVSQF---TASYGMVLNLLSGV---- 628
R G D+ G +++ E + K + + +EP+ S+ A Y +L +LS
Sbjct: 385 RPGFDQIGESIIVVRDKEDVDRVFKKYILSDVEPIESKLGSERAFYTFLLGILSAEGSLS 444
Query: 629 -----------------------KAIHRSNESDDMRQSTGGRTLEDARKLVEQSFGNYVS 665
+AI +E +R+ TL + K V + N +
Sbjct: 445 EKQLEAFAYESLLAKSVVDVYFDRAIRWLSEHSFIREENNTFTLTNFGKRVADLYINPFT 504
Query: 666 SNVMLAAKEELKKNEKEIELLMSEITDEAIDRKSRKALSQKQYKEIAELQEDLRAEKRVR 725
++++ E K + + L + T + ++ + + +E+ EL EDL E V
Sbjct: 505 ADIIRKGLEGYKASCEIAYLHLLAFTPDG----PLVSVGRNEEEELIELLEDLECELLVE 560
Query: 726 TALRRQMEAKRISALKPLL 744
+ ++ALK L
Sbjct: 561 EPYEEDEYSLYLNALKVAL 579
>HELS_PYRHO (O59025) Putative ski2-type helicase (EC 3.6.1.-)
Length = 715
Score = 101 bits (251), Expect = 1e-20
Identities = 112/449 (24%), Positives = 181/449 (39%), Gaps = 80/449 (17%)
Query: 171 LRGSSVVVSAPTSSGKTLIAEAAAVATVAR-GRRIFYTTPLKALSNQKFREFRETFGDSY 229
L+G + +++ PT+SGKTLIAE A V + + G + Y PLKAL+ +KF+EF
Sbjct: 37 LKGENALIAIPTASGKTLIAEIAIVNRLLKEGGKAVYLVPLKALAEEKFKEF-------- 88
Query: 230 VGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEVHYLSDIS 289
KD + L + + + G+ S L D+I+ + S +
Sbjct: 89 -----------KDWEELGLKVAM-------ATGDYDSKDEWLGGYDIIIATAEKFDSLLR 130
Query: 290 RGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHFSM 349
G+ W + N L + +IH L+ S R L + +
Sbjct: 131 HGSSW-------------------IRNVKVLV--VDEIH----LIGSRDRGATLEFIITQ 165
Query: 350 KNSLLPLLDEKGTRMNRKLSLNYLQLQAAGYKPYKDDW---SRKRNARKRGYRMSYDSDE 406
+ ++ T N + +L K K DW +R +G+ D
Sbjct: 166 MLNRAQIIGLSATIGNPEELAEWLNA-----KLIKSDWRPVKLRRGVFYQGFVFWEDGKT 220
Query: 407 SMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRDMLPAIWFIFSRKGCDAAVQYIEDCK 466
F S + +AI+RS+ ++ F+ R+ + + K
Sbjct: 221 EKFN--SWEELVYDAIKRSK-----------------GSLVFVNMRRKAEKTALELSK-K 260
Query: 467 LLDECEKSEVELALKRFRIQYPDAVRETAVKGLLQGVAAHHAGCLPLWKAFIEELFQKGL 526
+ + K E+ + + E K L GVA HHAG + +EE F+KGL
Sbjct: 261 IRNFLTKKELRELKELAESLEENPTNEKLAKALQGGVAFHHAGLGREERVLVEENFKKGL 320
Query: 527 VKVVFATETLAAGINMPARTAVISSLSKRIDSGRRPLSSNELLQMAGRAGRRGIDESGHV 586
+KVV AT TL+AGIN PA ++ + + G + E+ QM GRAGR DE G
Sbjct: 321 IKVVVATPTLSAGINTPAFRVIVRDTWRYSEFGMERIPILEIQQMMGRAGRPKYDEVGEA 380
Query: 587 VLIQTPNEGAEECCKVLFAGLEPLVSQFT 615
+++ T E + + + E L SQ +
Sbjct: 381 IIVSTTEEPSTVMERYIKGKPEKLFSQLS 409
>HELS_PYRFU (O73946) Putative ski2-type helicase (EC 3.6.1.-)
Length = 720
Score = 95.1 bits (235), Expect = 1e-18
Identities = 67/181 (37%), Positives = 98/181 (54%), Gaps = 22/181 (12%)
Query: 171 LRGSSVVVSAPTSSGKTLIAEAAAVATV-ARGRRIFYTTPLKALSNQKFREFR--ETFGD 227
L G + ++S PT+SGKTLIAE A V + +G + Y PLKAL+ +KF+EF+ E G
Sbjct: 37 LEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIG- 95
Query: 228 SYVGLLTGDSAVNKDA-----QVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEV 282
V + TGD +KD ++I T E ++L S + +V ++V DE+
Sbjct: 96 LRVAMATGDYD-SKDEWLGKYDIIIATAEKFDSLLRHG-------SSWIKDVKILVADEI 147
Query: 283 HYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVP 342
H + RG E I+ + + Q+I LSAT+ NP+ELA W+ EL+ S RPV
Sbjct: 148 HLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWL-----NAELIVSDWRPVK 202
Query: 343 L 343
L
Sbjct: 203 L 203
Score = 81.6 bits (200), Expect = 1e-14
Identities = 58/171 (33%), Positives = 83/171 (47%), Gaps = 13/171 (7%)
Query: 493 ETAVKGLLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSL 552
E K + GVA HHAG + +EE F+KG++K V AT TL+AGIN PA +I +
Sbjct: 287 EKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI 346
Query: 553 SKRIDSGRRPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVS 612
+ D G + E+ QM GRAGR DE G +++ T ++ E +F E L S
Sbjct: 347 WRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFS 406
Query: 613 QFTASYGMVLNLLSGVKAIHRSNESDDMRQSTGGRTLEDARKLVEQSFGNY 663
Q + NL S V A + + G T+E+ K + +F Y
Sbjct: 407 QLSNE----SNLRSQVLA---------LIATFGYSTVEEILKFISNTFYAY 444
>HELS_THEAC (Q9HJX7) Putative ski2-type helicase (EC 3.6.1.-)
Length = 674
Score = 94.7 bits (234), Expect = 1e-18
Identities = 68/196 (34%), Positives = 105/196 (52%), Gaps = 20/196 (10%)
Query: 156 DFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSN 215
DF++ QR+A++ +G +VVVS PT++GKTLIA +A T R + Y PL++L+
Sbjct: 20 DFQLYDHQRMAIEQIRKGRNVVVSVPTAAGKTLIAYSAIYETFQRNLKSIYIVPLRSLAM 79
Query: 216 QKFREF-RETFGDSYVGLLTGDSAVNKD----AQVLIMTTEILRNMLYQSVGNVSSSRSG 270
+KF E R V + GD + D +I+T+E ++L+ ++
Sbjct: 80 EKFSELSRLRDLGLKVKMSIGDYDDSPDFIKRYDAVILTSEKADSLLHHDPYILN----- 134
Query: 271 LVNVDVIVLDEVHYLSDISRGTVWE---EIVIYCPKEVQLICLSATVANPDELAGWIGQI 327
+V ++VLDE+H + D SRG E I Y +V+++ LSATV+N ELA W+
Sbjct: 135 --DVGLLVLDEIHTIGDESRGPTLETVASIARYVNPDVRILALSATVSNAMELASWL--- 189
Query: 328 HGKTELVTSSKRPVPL 343
L+ S RPVPL
Sbjct: 190 --DASLIKSDFRPVPL 203
Score = 81.6 bits (200), Expect = 1e-14
Identities = 56/156 (35%), Positives = 83/156 (52%), Gaps = 6/156 (3%)
Query: 487 YPDAVRETAVKGLLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPART 546
Y D + E L +GVA HHAG +AFIE F+ +KV+ AT TLAAG+N+PAR
Sbjct: 276 YDDMLNEI----LPRGVAFHHAGLSNDQRAFIEREFRARRIKVIVATPTLAAGVNLPARL 331
Query: 547 AVISSLSKRIDSGRRPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCK-VLFA 605
++ +++ G L++ E+ QM GRAGR G D+ G + LI ++ + E K L
Sbjct: 332 VIVRDITRWGSDGISYLTNMEIKQMIGRAGRPGYDQYG-IGLIYVSSQSSYEAAKDYLST 390
Query: 606 GLEPLVSQFTASYGMVLNLLSGVKAIHRSNESDDMR 641
EP+VS + N L+ + + SD M+
Sbjct: 391 DPEPVVSYLGNEAKVRFNTLAAISMGLARSPSDIMK 426
>HELS_AERPE (Q9YFQ8) Putative ski2-type helicase (EC 3.6.1.-)
Length = 702
Score = 94.7 bits (234), Expect = 1e-18
Identities = 78/189 (41%), Positives = 109/189 (57%), Gaps = 25/189 (13%)
Query: 165 LAVQAFL-RGSSVVVSAPTSSGKTLIAEAAAVATVAR-GRRIFYTTPLKALSNQKFREFR 222
+A+QA + +G ++VV+APT SGKT IA A V ++AR G R FY PLK+++ +K+ F
Sbjct: 1 MALQAGVEKGENLVVAAPTGSGKTFIALVAIVNSLARAGGRAFYLVPLKSVAYEKYTSFS 60
Query: 223 ETFGDSYVGLLTGDSAVN-----KDAQVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVI 277
S +GL S + +A V+I T E + S+ VS S + NV V+
Sbjct: 61 IL---SRMGLKLKISVGDFREGPPEAPVVIATYE-----KFDSLLRVSPSLAR--NVSVL 110
Query: 278 VLDEVHYLSDISRGTVWEEIV---IYCPKEVQLICLSATVANPDELAGWIGQIHGKTELV 334
++DE+H +SD RG + E IV + E QL+ LSATV N E+A WIG GK +V
Sbjct: 111 IVDEIHSVSDPKRGPILESIVSRMLASAGEAQLVGLSATVPNAGEIAEWIG---GK--IV 165
Query: 335 TSSKRPVPL 343
SS RPVPL
Sbjct: 166 ESSWRPVPL 174
Score = 89.7 bits (221), Expect = 4e-17
Identities = 46/102 (45%), Positives = 62/102 (60%)
Query: 488 PDAVRETAVKGLLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTA 547
P +V E + G+A HHAG P + +EE F+ G VKVV++T TLAAG+N+PAR
Sbjct: 260 PRSVAEELASLIAAGIAYHHAGLPPSLRKTVEEAFRAGAVKVVYSTPTLAAGVNLPARRV 319
Query: 548 VISSLSKRIDSGRRPLSSNELLQMAGRAGRRGIDESGHVVLI 589
VI S + R P+ E QMAGRAGR G+DE G +++
Sbjct: 320 VIDSYYRYEAGFREPIRVAEYKQMAGRAGRPGLDEFGEAIIV 361
>HELS_SULTO (Q974S1) Putative ski2-type helicase (EC 3.6.1.-)
Length = 704
Score = 94.4 bits (233), Expect = 2e-18
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 10/178 (5%)
Query: 168 QAFLRGSSVVVSAPTSSGKTLIAEAAAVA-TVARGRRIFYTTPLKALSNQKFREFRETFG 226
+ L G ++V++PT+SGKTLIAE + +++G + Y TPL+AL+N+K+ F++
Sbjct: 37 KGLLDGKRLLVTSPTASGKTLIAELGMINYLLSKGGKAIYITPLRALTNEKYNTFKDW-- 94
Query: 227 DSYVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSSRSGLVN-VDVIVLDEVHYL 285
+G+ TG ++ + D + + Y+ + ++ ++ +N V VLDE HYL
Sbjct: 95 -ETLGIKTGMTSGDYDTDDAWLENYDIIVTTYEKLDSLWRHKAKWLNEVSYFVLDEFHYL 153
Query: 286 SDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPL 343
+D RG E + I K ++ LSAT++N E+A W+ ELV ++ RPVPL
Sbjct: 154 NDPERGPTVESVAIRAKKRGIVLGLSATISNGKEIANWL-----NAELVATNWRPVPL 206
Score = 80.9 bits (198), Expect = 2e-14
Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 11/176 (6%)
Query: 459 VQYIEDCKLLDECEKSEVELALKRFRIQYPDA-VRETAVKGLLQGVAAHHAGCLPLWKAF 517
VQY+ KL D K +E+A K ++ + +E +L+GVA HHAG +
Sbjct: 268 VQYMNFVKLED---KKLLEIARKIKEVEDAGSNEKEDLYNLVLRGVAYHHAGLSKGLRDI 324
Query: 518 IEELFQKGLVKVVFATETLAAGINMPARTAVISSL---SKRIDSGRRPLSSNELLQMAGR 574
IE F+ ++KV+ AT TLAAG+N+PAR VI + ++++ + + QM+GR
Sbjct: 325 IESSFRDRILKVIVATPTLAAGVNLPARAVVIGDIYRYNRKVVGYMDLIPVMDYKQMSGR 384
Query: 575 AGRRGIDESGH-VVLIQTPNEGAEECCKVLFAGLEPLVSQF---TASYGMVLNLLS 626
AGR G DE+G VV+++ E + + L + +EP+ S+ +A Y ++++++
Sbjct: 385 AGRPGFDENGEAVVVVRNKREAEKVYERYLMSDVEPIESKLGSESAFYSFLISIIA 440
>HELS_THEVO (Q97AI2) Putative ski2-type helicase (EC 3.6.1.-)
Length = 674
Score = 94.0 bits (232), Expect = 2e-18
Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 20/206 (9%)
Query: 156 DFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSN 215
DF + QR+A++ F +G +++VS PT++GKTLIA +A T + + Y PL++L+
Sbjct: 20 DFELYDHQRMAIEQFRKGKNIMVSVPTAAGKTLIAYSAIYETFKKKLKSIYIVPLRSLAM 79
Query: 216 QKFRE---FRETFGDSYVGLLTGDSAVN--KDAQVLIMTTEILRNMLYQSVGNVSSSRSG 270
+K+ E RE + + D + K V+I+T+E ++++ +
Sbjct: 80 EKYEELSRLRELGMRVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHHDPYMME----- 134
Query: 271 LVNVDVIVLDEVHYLSDISRGTVWEEIVI---YCPKEVQLICLSATVANPDELAGWIGQI 327
V ++V+DE+H + D RG E ++ Y E ++I LSATV+N E+A W+
Sbjct: 135 --EVGLMVIDEIHMIGDEYRGPTLETVITTARYVNPETRIIALSATVSNASEIAEWL--- 189
Query: 328 HGKTELVTSSKRPVPLTWHFSMKNSL 353
L+ SS RPVPL +N L
Sbjct: 190 --NASLIKSSFRPVPLKVGILYRNRL 213
Score = 75.5 bits (184), Expect = 8e-13
Identities = 42/98 (42%), Positives = 60/98 (60%), Gaps = 4/98 (4%)
Query: 487 YPDAVRETAVKGLLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPART 546
Y D + E L GV+ HHAG ++FIE+ F+ +KV+ AT TLAAG+N+PAR
Sbjct: 276 YDDLLNEM----LPHGVSFHHAGLSNEQRSFIEKAFRHRKLKVIVATPTLAAGVNLPARL 331
Query: 547 AVISSLSKRIDSGRRPLSSNELLQMAGRAGRRGIDESG 584
++ +++ D G LS+ E+ QM GRAGR G D+ G
Sbjct: 332 VIVKDVTRYGDLGITYLSNMEVKQMIGRAGRPGYDQYG 369
>HELS_PYRAB (Q9V0A9) Putative ski2-type helicase (EC 3.6.1.-)
Length = 715
Score = 91.7 bits (226), Expect = 1e-17
Identities = 67/181 (37%), Positives = 97/181 (53%), Gaps = 22/181 (12%)
Query: 171 LRGSSVVVSAPTSSGKTLIAEAA-AVATVARGRRIFYTTPLKALSNQKFREFR--ETFGD 227
L G +++V+ PT+SGKTLIAE A A + G + Y PLKAL+ +KFREF+ E G
Sbjct: 37 LEGENLLVAIPTASGKTLIAEIAIANKLLEEGGKAVYIVPLKALAEEKFREFKDWERLGL 96
Query: 228 SYVGLLTGDSAVNKDA-----QVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEV 282
V + TGD +KD ++I T E ++L S + +V ++V+DE+
Sbjct: 97 K-VAMATGDYD-SKDEWLGKYDIIIATAEKFDSLLRHG-------SSWIRDVKMLVIDEI 147
Query: 283 HYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVP 342
H + RG E I+ Q+I LSAT+ NP+ELA W+ +L+ S RPV
Sbjct: 148 HLIGSRDRGATLEFIITQMLGRAQIIGLSATIGNPEELAEWL-----NAKLIRSDWRPVK 202
Query: 343 L 343
L
Sbjct: 203 L 203
Score = 79.7 bits (195), Expect = 4e-14
Identities = 44/102 (43%), Positives = 58/102 (56%)
Query: 493 ETAVKGLLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSL 552
E K LL GVA HHAG + +E+ F+KGL+KVV AT TL+AGIN PA +I
Sbjct: 287 EKLAKALLSGVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIRDT 346
Query: 553 SKRIDSGRRPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNE 594
+ + G + E+ QM GRAGR DE G +++ T E
Sbjct: 347 WRYSEFGMERIPVLEVQQMMGRAGRPRYDEVGEAIIVSTTEE 388
>HELS_METTH (O26901) Putative ski2-type helicase (EC 3.6.1.-)
Length = 690
Score = 89.7 bits (221), Expect = 4e-17
Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 24/187 (12%)
Query: 163 QRLAVQAFLRGS--SVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFRE 220
QR A++A S + +++ PT+SGKTL+ AA+ TV G R+ YT PL ++ N+K +E
Sbjct: 26 QRSAIEAGYLESEDNYIIAIPTASGKTLLGIIAALKTVMEGGRVIYTVPLLSIQNEKIKE 85
Query: 221 FRETFGDSYVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSS-SRSGLVNVDVIVL 279
FR+ L V KD + T + M+++S +++ S + L VD++++
Sbjct: 86 FRK--------LEEHGIRVGKDPR-----TSDIAVMVFESFDSLTRFSWNILREVDLLIV 132
Query: 280 DEVHYLSDISRGTVWEEIVIYC---PKEVQLICLSATVANPDELAGWIGQIHGKTELVTS 336
DE H + + +RG V E + V+++ LSAT++N DE+AGW+ +V
Sbjct: 133 DEFHMIGEYTRGPVIESAITRARTLNPSVRIVALSATLSNMDEIAGWL-----DARVVEH 187
Query: 337 SKRPVPL 343
RPVPL
Sbjct: 188 DYRPVPL 194
Score = 66.6 bits (161), Expect = 4e-10
Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 8/157 (5%)
Query: 448 FIFSRKGCDAAVQYIEDC---KLLDECEKSEVELALK-----RFRIQYPDAVRETAVKGL 499
F+ +R+ ++ ++ D K+ D+ +S E+A K + R P + + L
Sbjct: 230 FVSTRRFTESLASHLADKISGKIPDDMVESFREVAGKVLEVPKSRGSPPTSTCLKLAECL 289
Query: 500 LQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSKRIDSG 559
G+A HHAG + IE+ F+ G + ++ AT +L G+N+P+RT VI ++ G
Sbjct: 290 EAGIAFHHAGLFNRQREIIEDEFRDGNILMITATPSLMYGVNLPSRTVVIRDYTRWTSQG 349
Query: 560 RRPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGA 596
R + + QM+GRAGR D++G+ LI ++ A
Sbjct: 350 PRRIPVFDYEQMSGRAGRPQYDDAGYSYLIARSHDEA 386
>HELS_METAC (Q8TL39) Putative ski2-type helicase (EC 3.6.1.-)
Length = 730
Score = 89.7 bits (221), Expect = 4e-17
Identities = 61/185 (32%), Positives = 97/185 (51%), Gaps = 22/185 (11%)
Query: 168 QAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFREFRETFGD 227
+ L G +++ + PT+SGKTL+AE A + +V G + Y PL+AL+++KFR F++ F +
Sbjct: 34 KGLLEGKNLLAAIPTASGKTLLAELAMLKSVLAGGKALYIVPLRALASEKFRRFQD-FSE 92
Query: 228 --SYVGLLTGDSAVNKDA----QVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDE 281
VG+ TGD + +++ T+E ++L + + + + V+V+DE
Sbjct: 93 LGIRVGISTGDYDRRDEGLGINDIIVATSEKTDSLL-------RNETAWMQEISVVVVDE 145
Query: 282 VHYLSDISRGTVWEEIVIYCPKE---VQLICLSATVANPDELAGWIGQIHGKTELVTSSK 338
VH + RG E + K Q++ LSATV N DELA W+ ELV S
Sbjct: 146 VHLIDSADRGPTLEVTLAKLRKMNPFCQILALSATVGNADELAAWL-----DAELVLSEW 200
Query: 339 RPVPL 343
RP L
Sbjct: 201 RPTDL 205
Score = 79.0 bits (193), Expect = 7e-14
Identities = 66/210 (31%), Positives = 100/210 (47%), Gaps = 23/210 (10%)
Query: 502 GVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSK-RIDSGR 560
G A HHAG + +E F++G VK++ +T TLAAG+N+PAR +I S + DSG
Sbjct: 305 GTAFHHAGLTSPLRELVETGFREGYVKLISSTPTLAAGLNLPARRVIIRSYRRYSSDSGM 364
Query: 561 RPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECC----KVLFAGLEPLVSQFTA 616
+P+ E QMAGRAGR +D G VL+ + EE K + AG E + S+
Sbjct: 365 QPIPVLEYKQMAGRAGRPRLDPYGEAVLLA---KSYEELLFLFEKYIEAGAEDIWSKLGT 421
Query: 617 SYGMVLNLLSGVKAIHRSNESDDMRQSTG-GRTLEDARKLVEQSFGNYVSSNVMLAAKEE 675
+ ++LS + S G RT E+ +E +F Y SN L+ +
Sbjct: 422 ENALRTHVLSTI--------------SNGFARTKEELMDFLEATFFAYQYSNFGLSVVVD 467
Query: 676 LKKNEKEIELLMSEITDEAIDRKSRKALSQ 705
N E ++ + +D I K +S+
Sbjct: 468 ECLNFLRQEGMLEQDSDALISTMFGKLVSR 497
>HELS_METMA (Q8PZR7) Putative ski2-type helicase (EC 3.6.1.-)
Length = 730
Score = 88.6 bits (218), Expect = 9e-17
Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 20/184 (10%)
Query: 168 QAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFREFRE-TFG 226
+ L G +++ + PT+SGKTL+AE A + +V G + Y PL+AL+++KFR F+E +
Sbjct: 34 KGLLEGKNLLAAIPTASGKTLLAELAMLKSVLNGGKALYIVPLRALASEKFRRFQEFSVL 93
Query: 227 DSYVGLLTGDSAVNKDA----QVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEV 282
VG+ TGD + +++ T+E ++L + + + + V+V DEV
Sbjct: 94 GMRVGISTGDYDRRDEGLGINDIIVATSEKTDSLL-------RNETAWMQEISVVVADEV 146
Query: 283 HYLSDISRGTVWEEIVIYCPK---EVQLICLSATVANPDELAGWIGQIHGKTELVTSSKR 339
H + RG E + + Q++ LSATV N DELA W+ ELV S R
Sbjct: 147 HLIDSPDRGPTLEITLSKLRRMNPSCQVLALSATVGNADELAAWL-----DAELVLSEWR 201
Query: 340 PVPL 343
P L
Sbjct: 202 PTDL 205
Score = 79.0 bits (193), Expect = 7e-14
Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 30/221 (13%)
Query: 493 ETAVKGLL-----QGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTA 547
ET V +L G A HHAG + +E F++G +K++ +T TLAAG+N+PAR
Sbjct: 291 ETDVSSVLATCVRSGTAFHHAGLTTPLRELVENGFREGRIKIISSTPTLAAGLNLPARRV 350
Query: 548 VISSLSK-RIDSGRRPLSSNELLQMAGRAGRRGIDESGHVVLI-QTPNEGAEECCKVLFA 605
+I S + DSG +P+ E QMAGRAGR +D G VL+ ++ E K + A
Sbjct: 351 IIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPRLDPYGEAVLLAKSYEEFVFLFEKYIEA 410
Query: 606 GLEPLVSQFTASYGMVLNLLSGVKAIHRSNESDDMRQSTG-GRTLEDARKLVEQSFGNYV 664
G E + S+ + ++LS + S G RT E+ +E +F +
Sbjct: 411 GAEDIWSKLGTENALRTHILSTI--------------SNGFARTREELMDFLEATFFAFQ 456
Query: 665 SSNVMLAAKEE-----LKKN---EKEIELLMSEITDEAIDR 697
SN L+A + L++ EK+ + L+S + + + R
Sbjct: 457 YSNFGLSAVVDECLDFLRREGMLEKDPDALVSTVFGKLVSR 497
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,583,391
Number of Sequences: 164201
Number of extensions: 5903615
Number of successful extensions: 59560
Number of sequences better than 10.0: 896
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 319
Number of HSP's that attempted gapping in prelim test: 38313
Number of HSP's gapped (non-prelim): 7145
length of query: 1177
length of database: 59,974,054
effective HSP length: 121
effective length of query: 1056
effective length of database: 40,105,733
effective search space: 42351654048
effective search space used: 42351654048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0028b.4