BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0028b.2
         (533 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran...   339  1e-92
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain...   318  2e-86
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein    181  5e-45
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810...   148  4e-35
YME4_YEAST (Q04711) Transposon Ty1 protein B                          124  8e-28
YMD9_YEAST (Q03434) Transposon Ty1 protein B                          124  8e-28
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)       124  8e-28
YJZ7_YEAST (P47098) Transposon Ty1 protein B                          122  2e-27
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein     120  9e-27
YMU0_YEAST (Q04670) Transposon Ty1 protein B                          120  1e-26
YJZ9_YEAST (P47100) Transposon Ty1 protein B                          117  7e-26
YMT5_YEAST (Q04214) Transposon Ty1 protein B                          116  2e-25
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240...    47  9e-05
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II      38  0.057
COMB_THETN (Q8R8M3) Probable 2-phosphosulfolactate phosphatase (...    33  2.4
SYD_PORGI (Q7MXM0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar...    32  3.2
VN35_ROTA1 (Q03244) Nonstructural RNA-binding protein 35 (NS35) ...    31  7.0
HOP1_CAEEL (O02100) Presenilin hop-1                                   31  9.2

>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
            Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score =  339 bits (869), Expect = 1e-92
 Identities = 184/452 (40%), Positives = 288/452 (63%), Gaps = 17/452 (3%)

Query: 82   FSTKPGLDYSEVFAPVARIETIRLVVSIASARNWPIFQLDVKSAFLNGPLEEEVYVSQPP 141
            F  K G+D+ E+F+PV ++ +IR ++S+A++ +  + QLDVK+AFL+G LEEE+Y+ QP 
Sbjct: 883  FEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPE 942

Query: 142  GFEIQGKENSVFKLSKALYGLKQAPRAWNKRIDGFLLQLKFHRCSVEYGVYVRKSHGDTG 201
            GFE+ GK++ V KL+K+LYGLKQAPR W  + D F+    + +   +  VY  K   +  
Sbjct: 943  GFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYF-KRFSENN 1001

Query: 202  LLLICLYVDDLLITGSDPKELDELKQILKSEFEMSDLGKLGYFLGMQF--EYTAAGIFMY 259
             +++ LYVDD+LI G D   + +LK  L   F+M DLG     LGM+   E T+  +++ 
Sbjct: 1002 FIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLS 1061

Query: 260  QQKYIKDILKRFNMGNCHPVTTPSEVNIKLRR-------DDEGDVDASLYKQLVGSLRF- 311
            Q+KYI+ +L+RFNM N  PV+TP   ++KL +       +++G++    Y   VGSL + 
Sbjct: 1062 QEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYA 1121

Query: 312  LCNSRLDISYGVGLISKFMCAPKKSHLAAAKRILRYLQGTTDYGILFPRQKKLGKELELV 371
            +  +R DI++ VG++S+F+  P K H  A K ILRYL+GTT   + F      G +  L 
Sbjct: 1122 MVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFG-----GSDPILK 1176

Query: 372  GYTDSDYSGDLDDRKSTSGYLFQLHGAPISWTSKKQPVIALSSCEAEYIAGSFAACQAVW 431
            GYTD+D +GD+D+RKS++GYLF   G  ISW SK Q  +ALS+ EAEYIA +    + +W
Sbjct: 1177 GYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIW 1236

Query: 432  LEELLKEMGFVTKKPMELMVDNISAISLAKNPISHGRSKHIEVRFHFLREQVNGGKLELV 491
            L+  L+E+G + +K   +  D+ SAI L+KN + H R+KHI+VR+H++RE V+   L+++
Sbjct: 1237 LKRFLQELG-LHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVL 1295

Query: 492  YCPTDEQKADIFTKPLKTERFVILRKEIGVVS 523
               T+E  AD+ TK +   +F + ++ +G+ S
Sbjct: 1296 KISTNENPADMLTKVVPRNKFELCKELVGMHS 1327


>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
            Copia VLP protein; Copia protease (EC 3.4.23.-)]
          Length = 1409

 Score =  318 bits (815), Expect = 2e-86
 Identities = 178/446 (39%), Positives = 273/446 (60%), Gaps = 12/446 (2%)

Query: 82   FSTKPGLDYSEVFAPVARIETIRLVVSIASARNWPIFQLDVKSAFLNGPLEEEVYVSQPP 141
            F+ K  +DY E FAPVARI + R ++S+    N  + Q+DVK+AFLNG L+EE+Y+  P 
Sbjct: 963  FTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQ 1022

Query: 142  GFEIQGKENSVFKLSKALYGLKQAPRAWNKRIDGFLLQLKFHRCSVEYGVYVRKSHGDTG 201
            G  I    ++V KL+KA+YGLKQA R W +  +  L + +F   SV+  +Y+        
Sbjct: 1023 G--ISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINE 1080

Query: 202  LLLICLYVDDLLITGSDPKELDELKQILKSEFEMSDLGKLGYFLGMQFEYTAAGIFMYQQ 261
             + + LYVDD++I   D   ++  K+ L  +F M+DL ++ +F+G++ E     I++ Q 
Sbjct: 1081 NIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQS 1140

Query: 262  KYIKDILKRFNMGNCHPVTTP--SEVNIKLRRDDEGDVDASLYKQLVGSLRF--LCNSRL 317
             Y+K IL +FNM NC+ V+TP  S++N +L   DE D +    + L+G L +  LC +R 
Sbjct: 1141 AYVKKILSKFNMENCNAVSTPLPSKINYELLNSDE-DCNTPC-RSLIGCLMYIMLC-TRP 1197

Query: 318  DISYGVGLISKFMCAPKKSHLAAAKRILRYLQGTTDYGILFPRQKKLGKELELVGYTDSD 377
            D++  V ++S++            KR+LRYL+GT D  ++F  +K L  E +++GY DSD
Sbjct: 1198 DLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIF--KKNLAFENKIIGYVDSD 1255

Query: 378  YSGDLDDRKSTSGYLFQLHGAP-ISWTSKKQPVIALSSCEAEYIAGSFAACQAVWLEELL 436
            ++G   DRKST+GYLF++     I W +K+Q  +A SS EAEY+A   A  +A+WL+ LL
Sbjct: 1256 WAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLL 1315

Query: 437  KEMGFVTKKPMELMVDNISAISLAKNPISHGRSKHIEVRFHFLREQVNGGKLELVYCPTD 496
              +    + P+++  DN   IS+A NP  H R+KHI++++HF REQV    + L Y PT+
Sbjct: 1316 TSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTE 1375

Query: 497  EQKADIFTKPLKTERFVILRKEIGVV 522
             Q ADIFTKPL   RFV LR ++G++
Sbjct: 1376 NQLADIFTKPLPAARFVELRDKLGLL 1401


>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
          Length = 308

 Score =  181 bits (458), Expect = 5e-45
 Identities = 115/308 (37%), Positives = 168/308 (54%), Gaps = 10/308 (3%)

Query: 120 LDVKSAFLNGPLEEEVYVSQPPGFEIQGKENSVFKLSKALYGLKQAPRAWNKRIDGFLLQ 179
           +DV +AFLN  ++E +YV QPPGF  +   + V++L   +YGLKQAP  WN+ I+  L +
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 180 LKFHRCSVEYGVYVRKSHGDTGLLLICLYVDDLLITGSDPKELDELKQILKSEFEMSDLG 239
           + F R   E+G+Y R +    G + I +YVDDLL+    PK  D +KQ L   + M DLG
Sbjct: 61  IGFCRHEGEHGLYFRST--SDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLG 118

Query: 240 KLGYFLGMQFEYTAAG-IFMYQQKYIKDILKRFNMGNCHPVTTPSEVNIKLRRDDEGDV- 297
           K+  FLG+    +  G I +  Q YI        +       TP   +  L       + 
Sbjct: 119 KVDKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLK 178

Query: 298 DASLYKQLVGSLRFLCNS-RLDISYGVGLISKFMCAPKKSHLAAAKRILRYLQGTTDYGI 356
           D + Y+ +VG L F  N+ R DISY V L+S+F+  P+  HL +A+R+LRYL  T    +
Sbjct: 179 DITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCL 238

Query: 357 LFPRQKKLGKELELVGYTDSDYSGDLDDRKSTSGYLFQLHGAPISWTSKK-QPVIALSSC 415
            +    + G ++ L  Y D+ +    D   ST GY+  L GAP++W+SKK + VI + S 
Sbjct: 239 KY----RSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPST 294

Query: 416 EAEYIAGS 423
           EAEYI  S
Sbjct: 295 EAEYITAS 302


>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
           (ORF240b)
          Length = 240

 Score =  148 bits (373), Expect = 4e-35
 Identities = 82/229 (35%), Positives = 130/229 (55%), Gaps = 4/229 (1%)

Query: 203 LLICLYVDDLLITGSDPKELDELKQILKSEFEMSDLGKLGYFLGMQFEYTAAGIFMYQQK 262
           + + LYVDD+L+TGS    L+ L   L S F M DLG + YFLG+Q +   +G+F+ Q K
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 263 YIKDILKRFNMGNCHPVTTPSEVNIKLRRDDEGDVDASLYKQLVGSLRFLCNSRLDISYG 322
           Y + IL    M +C P++TP  + +          D S ++ +VG+L++L  +R DISY 
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120

Query: 323 VGLISKFMCAPKKSHLAAAKRILRYLQGTTDYGILFPRQKKLGKELELVGYTDSDYSGDL 382
           V ++ + M  P  +     KR+LRY++GT  +G+   +  KL  +     + DSD++G  
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQ----AFCDSDWAGCT 176

Query: 383 DDRKSTSGYLFQLHGAPISWTSKKQPVIALSSCEAEYIAGSFAACQAVW 431
             R+ST+G+   L    ISW++K+QP ++ SS E EY A +  A +  W
Sbjct: 177 STRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225


>YME4_YEAST (Q04711) Transposon Ty1 protein B
          Length = 1328

 Score =  124 bits (310), Expect = 8e-28
 Identities = 109/435 (25%), Positives = 211/435 (48%), Gaps = 43/435 (9%)

Query: 107  VSIASARNWPIFQLDVKSAFLNGPLEEEVYVSQPPGFEIQGKENSVFKLSKALYGLKQAP 166
            +S+A   N+ I QLD+ SA+L   ++EE+Y+  PP     G  + + +L K+LYGLKQ+ 
Sbjct: 905  LSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSG 961

Query: 167  RAWNKRIDGFLLQLKFHRCSVE----YGVYVRKSHGDTGLLLICLYVDDLLITGSDPKEL 222
              W + I  +L++    +C +E    +    + S      + ICL+VDD+++   D    
Sbjct: 962  ANWYETIKSYLIK----QCGMEEVRGWSCVFKNSQ-----VTICLFVDDMILFSKDLNAN 1012

Query: 223  DELKQILKSEFE--MSDLG----KLGY-FLGMQFEYTAAGIF-MYQQKYIKDILKRFNM- 273
             ++   LK +++  + +LG    ++ Y  LG++ +Y       +  +  + + + + N+ 
Sbjct: 1013 KKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVP 1072

Query: 274  --GNCHPVTTPSEVNIKLRRDDEGDVDASLYKQLVGSLRFLC--------NSRLDISYGV 323
                   ++ P +  + + + DE ++D   YK+ V  ++ L           R D+ Y +
Sbjct: 1073 LNPKGRKLSAPGQPGLYIDQ-DELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYI 1131

Query: 324  GLISKFMCAPKKSHLAAAKRILRYLQGTTDYGILFPRQKKLGKELELVGYTDSDYSGDLD 383
              +++ +  P +  L     +++++  T D  +++ + K    + +LV  +D+ Y G+  
Sbjct: 1132 NTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQP 1190

Query: 384  DRKSTSGYLFQLHGAPISWTSKKQPVIALSSCEAEYIAGSFAACQAVWLEELLKEMGFVT 443
              KS  G ++ L+G  I   S K  +   S+ EAE  A S +      L  L++E+    
Sbjct: 1191 YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSHLVQEL---N 1247

Query: 444  KKPME--LMVDNISAIS-LAKNPISHGRSKHIEVRFHFLREQVNGGKLELVYCPTDEQKA 500
            KKP+   L+ D+ S IS +  N     R++    +   LR++V+G  L + Y  T +  A
Sbjct: 1248 KKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIA 1307

Query: 501  DIFTKPLKTERFVIL 515
            D+ TKPL  + F +L
Sbjct: 1308 DVMTKPLPIKTFKLL 1322


>YMD9_YEAST (Q03434) Transposon Ty1 protein B
          Length = 1328

 Score =  124 bits (310), Expect = 8e-28
 Identities = 109/435 (25%), Positives = 212/435 (48%), Gaps = 43/435 (9%)

Query: 107  VSIASARNWPIFQLDVKSAFLNGPLEEEVYVSQPPGFEIQGKENSVFKLSKALYGLKQAP 166
            +S+A   N+ I QLD+ SA+L   ++EE+Y+  PP     G  + + +L K+LYGLKQ+ 
Sbjct: 905  LSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSG 961

Query: 167  RAWNKRIDGFLLQLKFHRCSVE----YGVYVRKSHGDTGLLLICLYVDDLLITGSDPKEL 222
              W + I  +L++    +C +E    +    + S      + ICL+VDD+++   D    
Sbjct: 962  ANWYETIKSYLIK----QCGMEEVRGWSCVFKNSQ-----VTICLFVDDMILFSKDLNAN 1012

Query: 223  DELKQILKSEFE--MSDLG----KLGY-FLGMQFEYTAAGIF-MYQQKYIKDILKRFNM- 273
             ++   LK +++  + +LG    ++ Y  LG++ +Y       +  +  + + + + N+ 
Sbjct: 1013 KKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVP 1072

Query: 274  --GNCHPVTTPSEVNIKLRRDDEGDVDASLYKQLVGSLRFLC--------NSRLDISYGV 323
                   ++ P +  + + + DE ++D   YK+ V  ++ L           R D+ Y +
Sbjct: 1073 LNPKGRKLSAPGQPGLYIDQ-DELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYI 1131

Query: 324  GLISKFMCAPKKSHLAAAKRILRYLQGTTDYGILFPRQKKLGKELELVGYTDSDYSGDLD 383
              +++ +  P +  L     +++++  T D  +++ + K    + +LV  +D+ Y G+  
Sbjct: 1132 NTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQP 1190

Query: 384  DRKSTSGYLFQLHGAPISWTSKKQPVIALSSCEAEYIAGSFAACQAVWLEELLKEMGFVT 443
              KS  G ++ L+G  I   S K  +   S+ EAE  A S +      L  L++E+    
Sbjct: 1191 YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQEL---N 1247

Query: 444  KKPM--ELMVDNISAISLAKNPISHG-RSKHIEVRFHFLREQVNGGKLELVYCPTDEQKA 500
            KKP+   L+ D+ S IS+ K+      R++    +   LR++V+G  L + Y  T +  A
Sbjct: 1248 KKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIA 1307

Query: 501  DIFTKPLKTERFVIL 515
            D+ TKPL  + F +L
Sbjct: 1308 DVMTKPLPIKTFKLL 1322


>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
          Length = 1770

 Score =  124 bits (310), Expect = 8e-28
 Identities = 110/430 (25%), Positives = 196/430 (45%), Gaps = 33/430 (7%)

Query: 107  VSIASARNWPIFQLDVKSAFLNGPLEEEVYVSQPPGFEIQGKENSVFKLSKALYGLKQAP 166
            +SIA   ++ I QLD+ SA+L   ++EE+Y+  PP     G  + + +L K+LYGLKQ+ 
Sbjct: 1347 LSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHL---GLNDKLLRLRKSLYGLKQSG 1403

Query: 167  RAWNKRIDGFLLQLKFHRCSVEYGVYVRKSHGDTGLLLICLYVDDLLITGSDPKELDELK 226
              W + I  +L+      C     V           + ICL+VDD+++   D     ++ 
Sbjct: 1404 ANWYETIKSYLI-----NCCDMQEVRGWSCVFKNSQVTICLFVDDMILFSKDLNANKKII 1458

Query: 227  QILKSEFEMSDLGKLGYFLGMQFEYTAAGIFMYQQKYIKDILKRFNMGNCHPVTTPSEVN 286
              LK +++   +        +Q++     I   + KY+K  +++        +  P    
Sbjct: 1459 TTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMKLGMEKSLTEKLPKLNVPLNPK 1518

Query: 287  IKLRR----------DDEGDVDASLYKQLVGSLRFLC--------NSRLDISYGVGLISK 328
             K  R           DE ++D   YK+ V  ++ L           R D+ Y +  +++
Sbjct: 1519 GKKLRAPGQPGHYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQ 1578

Query: 329  FMCAPKKSHLAAAKRILRYLQGTTDYGILFPRQKKLGKELELVGYTDSDYSGDLDDRKST 388
             +  P +  L     +++++  T D  +++ + K    + +LV  +D+ Y G+    KS 
Sbjct: 1579 HILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKLVAISDASY-GNQPYYKSQ 1637

Query: 389  SGYLFQLHGAPISWTSKKQPVIALSSCEAEYIAGSFAACQAVWLEELLKEMGFVTKKPM- 447
             G +F L+G  I   S K  +   S+ EAE  A S A      L  L++E+    KKP+ 
Sbjct: 1638 IGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQEL---NKKPII 1694

Query: 448  -ELMVDNISAISLAKNPISHG-RSKHIEVRFHFLREQVNGGKLELVYCPTDEQKADIFTK 505
              L+ D+ S IS+ K+      R++    +   LR++V+G  L + Y  T +  AD+ TK
Sbjct: 1695 KGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIADVMTK 1754

Query: 506  PLKTERFVIL 515
            PL  + F +L
Sbjct: 1755 PLPIKTFKLL 1764


>YJZ7_YEAST (P47098) Transposon Ty1 protein B
          Length = 1755

 Score =  122 bits (306), Expect = 2e-27
 Identities = 109/435 (25%), Positives = 211/435 (48%), Gaps = 43/435 (9%)

Query: 107  VSIASARNWPIFQLDVKSAFLNGPLEEEVYVSQPPGFEIQGKENSVFKLSKALYGLKQAP 166
            +S+A   N+ I QLD+ SA+L   ++EE+Y+  PP     G  + + +L K+ YGLKQ+ 
Sbjct: 1332 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSHYGLKQSG 1388

Query: 167  RAWNKRIDGFLLQLKFHRCSVE----YGVYVRKSHGDTGLLLICLYVDDLLITGSDPKEL 222
              W + I  +L++    +C +E    +    + S      + ICL+VDD+++   D    
Sbjct: 1389 ANWYETIKSYLIK----QCGMEEVRGWSCVFKNSQ-----VTICLFVDDMILFSKDLNAN 1439

Query: 223  DELKQILKSEFE--MSDLG----KLGY-FLGMQFEYTAAGIF-MYQQKYIKDILKRFNM- 273
             ++   LK +++  + +LG    ++ Y  LG++ +Y       +  +  + + + + N+ 
Sbjct: 1440 KKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVP 1499

Query: 274  --GNCHPVTTPSEVNIKLRRDDEGDVDASLYKQLVGSLRFLC--------NSRLDISYGV 323
                   ++ P +  + + + DE ++D   YK+ V  ++ L           R D+ Y +
Sbjct: 1500 LNPKGRKLSAPGQPGLYIDQ-DELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLLYYI 1558

Query: 324  GLISKFMCAPKKSHLAAAKRILRYLQGTTDYGILFPRQKKLGKELELVGYTDSDYSGDLD 383
              +++ +  P +  L     +++++  T D  +++ + K    + +LV  +D+ Y G+  
Sbjct: 1559 NTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEPDNKLVAISDASY-GNQP 1617

Query: 384  DRKSTSGYLFQLHGAPISWTSKKQPVIALSSCEAEYIAGSFAACQAVWLEELLKEMGFVT 443
              KS  G +F L+G  I   S K  +   S+ EAE  A S +      L  L++E+    
Sbjct: 1618 YYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQEL---N 1674

Query: 444  KKPM--ELMVDNISAISLAKNPISHG-RSKHIEVRFHFLREQVNGGKLELVYCPTDEQKA 500
            KKP+   L+ D+ S IS+ K+      R++    +   LR++V+G  L + Y  T +  A
Sbjct: 1675 KKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIETKKNIA 1734

Query: 501  DIFTKPLKTERFVIL 515
            D+ TKPL  + F +L
Sbjct: 1735 DVMTKPLPIKTFKLL 1749


>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
          Length = 1803

 Score =  120 bits (301), Expect = 9e-27
 Identities = 111/442 (25%), Positives = 188/442 (42%), Gaps = 32/442 (7%)

Query: 90   YSEVFAPVARIETIRLVVSIASARNWPIFQLDVKSAFLNGPLEEEVYVSQPPGFEIQGKE 149
            YS +         I++ + IA+ RN  +  LD+  AFL   LEEE+Y+  P         
Sbjct: 1353 YSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHPHD------R 1406

Query: 150  NSVFKLSKALYGLKQAPRAWNKRIDGFLLQLKFHRCSVEYGVYVRKSHGDTGLLLICLYV 209
              V KL+KALYGLKQ+P+ WN  +  +L  +     S   G+Y  +       L+I +YV
Sbjct: 1407 RCVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLYQTEDKN----LMIAVYV 1462

Query: 210  DDLLITGSDPKELDELKQILKSEFEMSDLGKL------GYFLGMQFEY---------TAA 254
            DD +I  S+ + LDE    LKS FE+   G L         LGM   Y         T  
Sbjct: 1463 DDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLTLK 1522

Query: 255  GIFMYQQKYIKDILKRFNMGNCHPVTT---PSEVNIKLRRDDEGDVDASLYKQLVGSLRF 311
                   K   + LK+    +   ++T     + ++    ++E        +QL+G L +
Sbjct: 1523 SFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEFRQGVLKLQQLLGELNY 1582

Query: 312  LCNS-RLDISYGVGLISKFMCAPKKSHLAAAKRILRYLQGTTDYGILFPRQKKLGKELEL 370
            + +  R DI + V  +++ +  P +       +I++YL    D GI + R     K+ ++
Sbjct: 1583 VRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDIGIHYDRD--CNKDKKV 1640

Query: 371  VGYTDSDYSGDLDDRKSTSGYLFQLHGAPISWTSKKQPVIALSSCEAEYIAGSFAACQAV 430
            +  TD+    +  D +S  G +        +  S K     +SS EAE  A       + 
Sbjct: 1641 IAITDASVGSEY-DAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYADSE 1699

Query: 431  WLEELLKEMGFVTKKPMELMVDNISAISLAKNPISHGRSKHIEVRFHFLREQVNGGKLEL 490
             L+  LKE+G      + ++ D+  AI          + K   ++   ++E++    ++L
Sbjct: 1700 TLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKSIKL 1759

Query: 491  VYCPTDEQKADIFTKPLKTERF 512
            +        AD+ TKP+    F
Sbjct: 1760 LKITGKGNIADLLTKPVSASDF 1781


>YMU0_YEAST (Q04670) Transposon Ty1 protein B
          Length = 1328

 Score =  120 bits (300), Expect = 1e-26
 Identities = 110/465 (23%), Positives = 221/465 (46%), Gaps = 46/465 (9%)

Query: 81   RFSTKPGLDYSEVFAPVARIETIR-----LVVSIASARNWPIFQLDVKSAFLNGPLEEEV 135
            RF  +  + + + + P  +  T+        +S+A   N+ I QLD+ SA+L   ++EE+
Sbjct: 874  RFVARGDIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933

Query: 136  YVSQPPGFEIQGKENSVFKLSKALYGLKQAPRAWNKRIDGFLLQLKFHRCSVE----YGV 191
            Y+  PP     G  + + +L K+LYGLKQ+   W + I  +L++    +C +E    +  
Sbjct: 934  YIRPPPHL---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIK----QCGMEEVRGWSC 986

Query: 192  YVRKSHGDTGLLLICLYVDDLLITGSDPKELDELKQILKSEFE--MSDLG----KLGY-F 244
              + S      + ICL+VDD+++   D     ++   LK +++  + +LG    ++ Y  
Sbjct: 987  VFKNSQ-----VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDI 1041

Query: 245  LGMQFEYTAAGIF-MYQQKYIKDILKRFNM---GNCHPVTTPSEVNIKLRR------DDE 294
            LG++ +Y       +  +  + + + + N+        ++ P +  + + +      +D+
Sbjct: 1042 LGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDD 1101

Query: 295  GDVDASLYKQLVGSLRFL-CNSRLDISYGVGLISKFMCAPKKSHLAAAKRILRYLQGTTD 353
              +     ++L+G   ++    R D+ Y +  +++ +  P K  L     +++++  T D
Sbjct: 1102 YKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRD 1161

Query: 354  YGILFPRQKKLGKELELVGYTDSDYSGDLDDRKSTSGYLFQLHGAPISWTSKKQPVIALS 413
              +++ + K +    +LV  +D+ Y G+    KS  G ++ L+G  I   S K  +   S
Sbjct: 1162 KQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTS 1220

Query: 414  SCEAEYIAGSFAACQAVWLEELLKEMGFVTKKPME--LMVDNISAIS-LAKNPISHGRSK 470
            + EAE  A S +      L  L++E+    KKP+   L+ D+ S IS +  N     R++
Sbjct: 1221 TTEAEIHAISESVPLLNNLSHLVQEL---NKKPITKGLLTDSKSTISIIISNNEEKFRNR 1277

Query: 471  HIEVRFHFLREQVNGGKLELVYCPTDEQKADIFTKPLKTERFVIL 515
                +   LR++V+G  L + Y  T +  AD+ TKPL  + F +L
Sbjct: 1278 FFGTKAMRLRDEVSGNHLHVCYIETKKNIADVMTKPLPIKTFKLL 1322


>YJZ9_YEAST (P47100) Transposon Ty1 protein B
          Length = 1755

 Score =  117 bits (293), Expect = 7e-26
 Identities = 112/439 (25%), Positives = 199/439 (44%), Gaps = 51/439 (11%)

Query: 107  VSIASARNWPIFQLDVKSAFLNGPLEEEVYVSQPPGFEIQGKENSVFKLSKALYGLKQAP 166
            +S+A   N+ I QLD+ SA+L   ++EE+Y+  PP     G  + + +L K+LYGLKQ+ 
Sbjct: 1332 LSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSG 1388

Query: 167  RAWNKRIDGFLLQLKFHRCSVE----YGVYVRKSHGDTGLLLICLYVDDLLITGSDPKEL 222
              W + I  +L+Q    +C +E    +    + S      + ICL+VDD+++   +    
Sbjct: 1389 ANWYETIKSYLIQ----QCGMEEVRGWSCVFKNSQ-----VTICLFVDDMVLFSKNLNSN 1439

Query: 223  DELKQILKSEFEMSDLGKLGYFLGMQFEYTAAGIFMYQQKYIKDILKRFNMGNCHPVTTP 282
              + + LK +++   +      LG   E     I   + KY +    +  M N      P
Sbjct: 1440 KRIIEKLKMQYDTKIIN-----LGESDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIP 1494

Query: 283  S---EVNIKLRR------------DDEGDVDASLYKQLVGSLRFLC--------NSRLDI 319
                 +N K R+              E +++   YK  V  ++ L           R D+
Sbjct: 1495 KLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDL 1554

Query: 320  SYGVGLISKFMCAPKKSHLAAAKRILRYLQGTTDYGILFPRQKKLGKELELVGYTDSDYS 379
             Y +  +++ +  P K  L     +++++  T D  +++ + K +    +LV  +D+ Y 
Sbjct: 1555 LYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY- 1613

Query: 380  GDLDDRKSTSGYLFQLHGAPISWTSKKQPVIALSSCEAEYIAGSFAACQAVWLEELLKEM 439
            G+    KS  G ++ L+G  I   S K  +   S+ EAE  A S +      L  L++E+
Sbjct: 1614 GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQEL 1673

Query: 440  GFVTKKPME--LMVDNISAIS-LAKNPISHGRSKHIEVRFHFLREQVNGGKLELVYCPTD 496
                KKP+   L+ D+ S IS +  N     R++    +   LR++V+G  L + Y  T 
Sbjct: 1674 ---DKKPITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETK 1730

Query: 497  EQKADIFTKPLKTERFVIL 515
            +  AD+ TKPL  + F +L
Sbjct: 1731 KNIADVMTKPLPIKTFKLL 1749


>YMT5_YEAST (Q04214) Transposon Ty1 protein B
          Length = 1328

 Score =  116 bits (290), Expect = 2e-25
 Identities = 107/432 (24%), Positives = 213/432 (48%), Gaps = 37/432 (8%)

Query: 107  VSIASARNWPIFQLDVKSAFLNGPLEEEVYVSQPPGFEIQGKENSVFKLSKALYGLKQAP 166
            +S+A   N+ I QLD+ SA+L   ++EE+Y+  PP     G  + + +L K+LYGLKQ+ 
Sbjct: 905  LSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHL---GMNDKLIRLKKSLYGLKQSG 961

Query: 167  RAWNKRIDGFLLQLKFHRCSVEYGVYVRKSHGDTGLLLICLYVDDLLI----TGSDPKEL 222
              W + I  +L++    +C +E  V       +   + ICL+VDD+++      S+ + +
Sbjct: 962  ANWYETIKSYLIK----QCGME-EVRGWSCVFENSQVTICLFVDDMVLFSKNLNSNKRII 1016

Query: 223  DELKQILKSEFEMSDLG----KLGY-FLGMQFEYTAAGIF-MYQQKYIKDILKRFNM--- 273
            D+LK  ++ + ++ +LG    ++ Y  LG++ +Y       +  +  + + + + N+   
Sbjct: 1017 DKLK--MQYDTKIINLGESDEEIQYDILGLEIKYQRGKYMKLGMENSLTEKIPKLNVPLN 1074

Query: 274  GNCHPVTTPSEVNIKLRR------DDEGDVDASLYKQLVGSLRFL-CNSRLDISYGVGLI 326
                 ++ P +  + + +      +D+  +     ++L+G   ++    R D+ Y +  +
Sbjct: 1075 PKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTL 1134

Query: 327  SKFMCAPKKSHLAAAKRILRYLQGTTDYGILFPRQKKLGKELELVGYTDSDYSGDLDDRK 386
            ++ +  P K  L     +++++  T D  +++ + K +    +LV  +D+ Y G+    K
Sbjct: 1135 AQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYK 1193

Query: 387  STSGYLFQLHGAPISWTSKKQPVIALSSCEAEYIAGSFAACQAVWLEELLKEMGFVTKKP 446
            S  G ++ L+G  I   S K  +   S+ EAE  A S +      L  L++E+    KKP
Sbjct: 1194 SQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSYLIQEL---DKKP 1250

Query: 447  ME--LMVDNISAIS-LAKNPISHGRSKHIEVRFHFLREQVNGGKLELVYCPTDEQKADIF 503
            +   L+ D+ S IS +  N     R++    +   LR++V+G  L + Y  T +  AD+ 
Sbjct: 1251 ITKGLLTDSKSTISIIISNNEEKFRNRFFGTKAMRLRDEVSGNHLHVCYIETKKNIADVM 1310

Query: 504  TKPLKTERFVIL 515
            TKPL  + F +L
Sbjct: 1311 TKPLPIKTFKLL 1322


>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
           (ORF111a)
          Length = 111

 Score = 47.4 bits (111), Expect = 9e-05
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)

Query: 311 FLCNSRLDISYGVGLISKFMCAPKKSHLAAAKRILRYLQGTTDYGILFPRQKKLGKELEL 370
           +L  +R D+++ V  +S+F  A + + + A  ++L Y++GT   G+ +        +L+L
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFY----SATSDLQL 57

Query: 371 VGYTDSDYSGDLDDRKSTSGY 391
             + DSD++   D R+S +G+
Sbjct: 58  KAFADSDWASCPDTRRSVTGF 78


>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
          Length = 1268

 Score = 38.1 bits (87), Expect = 0.057
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 30/116 (25%)

Query: 119 QLDVKSAFLNGPLEEEVYVSQPPGFEIQGKENSVFKLSKALYGLKQAPRAWNKRIDGFLL 178
           Q+D+K A+L   L+EE          +      +FK  +  +GLK AP ++ K +D  + 
Sbjct: 531 QIDLKDAYLQVELDEEAQK-----LAVINTHRGIFKYLRMTFGLKPAPASFQKIMDKMV- 584

Query: 179 QLKFHRCSVEYGVYVRKSHGDTGLLLICLYVDDLLITGSDPKELDELKQILKSEFE 234
                                +GL  + +Y DD++I+ S    ++E ++IL+  FE
Sbjct: 585 ---------------------SGLTGVAVYWDDIIISAS---SIEEHEKILRELFE 616


>COMB_THETN (Q8R8M3) Probable 2-phosphosulfolactate phosphatase (EC
           3.1.3.71)
          Length = 241

 Score = 32.7 bits (73), Expect = 2.4
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 28/138 (20%)

Query: 128 NGPLEEEVYVSQPPGFEIQGKENSVFKLSKALYGLKQAPRAWNKRIDGFLLQLKFHRCSV 187
           N PLE   YV +    +++GK   +F  +     LK+   A  + I G LL +       
Sbjct: 84  NSPLE---YVPE----KVKGK-TIIFTTTNGTRALKKVASA-EEVILGCLLNVS------ 128

Query: 188 EYGVYVRKSHGDTGLLLIC------LYVDDLLITGSDPKELDELKQILKSEFEMSDLGKL 241
               Y+ KS+ DT  +++C         DD+L  G+  ++L  L     ++FE  DL K 
Sbjct: 129 AVARYISKSNKDT--VIVCAGTEGKFSFDDILTAGAIYEKLKSL-----TDFESDDLSKA 181

Query: 242 GYFLGMQFEYTAAGIFMY 259
            YFL   +E     I  Y
Sbjct: 182 SYFLYKPYENNLYDIMKY 199


>SYD_PORGI (Q7MXM0) Aspartyl-tRNA synthetase (EC 6.1.1.12)
           (Aspartate--tRNA ligase) (AspRS)
          Length = 587

 Score = 32.3 bits (72), Expect = 3.2
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 14/116 (12%)

Query: 194 RKSHGDTGLLLICLYVDDLLITGSDPKELDELKQILKSEFEMSDLGKLGYFLGMQFEYTA 253
           R    + G L++ L  DDL+ T    K+L EL+  + S+  + D  K      + F    
Sbjct: 379 RTMEAEPGDLILILSGDDLMKTR---KQLCELRLEVGSQLGLRDKNKFSCLWVVDFP--- 432

Query: 254 AGIFMYQQKYIKDILKRFNMGNCHPVTTPSEVNIKLRRDDEGDVDASLYKQLVGSL 309
             +F + ++      KRF   + HP T+P   +I L   D G V A+ Y  ++  +
Sbjct: 433 --LFEWDEE-----TKRFYAMH-HPFTSPKPEDIPLLDTDPGAVRANAYDMVINGV 480


>VN35_ROTA1 (Q03244) Nonstructural RNA-binding protein 35 (NS35)
           (NCVP3)
          Length = 315

 Score = 31.2 bits (69), Expect = 7.0
 Identities = 15/47 (31%), Positives = 25/47 (52%)

Query: 278 PVTTPSEVNIKLRRDDEGDVDASLYKQLVGSLRFLCNSRLDISYGVG 324
           P+T P+ V  K+  +    +D  + K+LV  LR+  N    I++G G
Sbjct: 177 PITDPNFVEYKITLNHTNPIDDKIVKELVAELRWQYNKFAVITHGKG 223


>HOP1_CAEEL (O02100) Presenilin hop-1
          Length = 358

 Score = 30.8 bits (68), Expect = 9.2
 Identities = 21/74 (28%), Positives = 38/74 (50%), Gaps = 6/74 (8%)

Query: 200 TGLLL---ICLYVDDLLITGSDPKELDELKQI--LKSEFEMSDLGKLG-YFLGMQFEYTA 253
           TG+L    IC+    + +  S P++ ++ K +  L   ++ +D G +  Y +G     T+
Sbjct: 14  TGVLYPVAICMLFVAINVKLSQPEQQEQSKVVYGLFHSYDTADSGTITLYLIGFLILTTS 73

Query: 254 AGIFMYQQKYIKDI 267
            G+F YQ K+ K I
Sbjct: 74  LGVFCYQMKFYKAI 87


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.331    0.146    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,600,638
Number of Sequences: 164201
Number of extensions: 2526196
Number of successful extensions: 6484
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6416
Number of HSP's gapped (non-prelim): 20
length of query: 533
length of database: 59,974,054
effective HSP length: 115
effective length of query: 418
effective length of database: 41,090,939
effective search space: 17176012502
effective search space used: 17176012502
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 68 (30.8 bits)