BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0026.4
(161 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
MUKB_PHOLL (Q7N6B7) Chromosome partition protein mukB (Structura... 38 0.009
MUKB_VIBPA (Q87QW2) Chromosome partition protein mukB (Structura... 37 0.025
ENP1_TORCA (P14400) Electromotor neuron-associated protein 1 (Fr... 35 0.096
CENF_HUMAN (P49454) CENP-F kinetochore protein (Centromere prote... 35 0.096
YA49_MYCPN (P75065) Hypothetical protein MPN049 (D09_orf632) 33 0.21
MYHB_RABIT (P35748) Myosin heavy chain, smooth muscle isoform (S... 33 0.21
MUKB_VIBVY (Q7MJ64) Chromosome partition protein mukB (Structura... 33 0.21
M18A_HUMAN (Q92614) Myosin XVIIIA (Myosin 18A) (Myosin containin... 33 0.21
YL17_CAEEL (Q11102) Hypothetical protein C02F12.7 in chromosome X 33 0.28
Y7J3_ANASP (Q05070) Hypothetical protein alr4393 precursor 33 0.28
LPA2_MOUSE (Q8BSS9) Liprin-alpha 2 (Protein tyrosine phosphatase... 33 0.28
FL10_CHLRE (P46869) Kinesin-like protein FLA10 (KHP1 protein) 33 0.28
CLPB_AQUAE (O67588) Chaperone clpB 33 0.28
CALD_CHICK (P12957) Caldesmon (CDM) 33 0.28
TRHY_RABIT (P37709) Trichohyalin 33 0.37
RA50_PYRHO (O58687) DNA double-strand break repair rad50 ATPase 33 0.37
MYHB_HUMAN (P35749) Myosin heavy chain, smooth muscle isoform (S... 33 0.37
MUKB_VIBVU (Q8DAP8) Chromosome partition protein mukB (Structura... 33 0.37
LZT2_HUMAN (Q9BRK4) Leucine zipper putative tumor suppressor 2 (... 33 0.37
LPA3_RAT (Q91Z79) Liprin-alpha 3 (Protein tyrosine phosphatase r... 33 0.37
>MUKB_PHOLL (Q7N6B7) Chromosome partition protein mukB (Structural
maintenance of chromosome related protein)
Length = 1482
Score = 38.1 bits (87), Expect = 0.009
Identities = 33/150 (22%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 8 NQIRSLAFDQDLFWELHSSLSL----AEELTGLINQLLSRNIIASVKTPLQEFLSLLREA 63
N++ +L ++D E +++LS + +Q + +++ + T + + LR+
Sbjct: 785 NRLEALNLERDTLAERYATLSFDVQKIQRAHQAFSQFVGKHLSVAFDTDPEAEIRELRQ- 843
Query: 64 VPLYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQAD---PEGSVGALKALVDKLSTT 120
H EL + E Q ++ +++ K +L + P+ ++ + L+D++
Sbjct: 844 -----RHTELERELSRFEEQTQQQRQQYTQAKESLTTLNRLIPQVTLLLDETLIDRVEEI 898
Query: 121 AREELDIRQEKSRLETQQEDVLRRMEPLRA 150
REELD QE +R Q L ++EP+ A
Sbjct: 899 -REELDEAQEAARFLQQHGSALAKLEPMVA 927
>MUKB_VIBPA (Q87QW2) Chromosome partition protein mukB (Structural
maintenance of chromosome related protein)
Length = 1487
Score = 36.6 bits (83), Expect = 0.025
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 53 LQEFLSLLREAVPLYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQADPE-----GSV 107
L+E ++ L EA H + A + +D E+F+AL+A K AD + +
Sbjct: 899 LEEKIAQLSEAKAFLNNHAKAVAELEKIASALDADPEQFDALEAEYKAADEQLQELKKQI 958
Query: 108 GALKALVDKLSTTA-REELDIRQEKSRLETQQEDVLRRMEPLRAR 151
AL LV++ A + +D+ + S L Q + L + E +R R
Sbjct: 959 FALSDLVERRHYFAYSDSVDLLNQSSELSEQLKAKLVQAEQMRTR 1003
>ENP1_TORCA (P14400) Electromotor neuron-associated protein 1
(Fragment)
Length = 721
Score = 34.7 bits (78), Expect = 0.096
Identities = 17/81 (20%), Positives = 43/81 (52%)
Query: 69 EHRELTARVFFAEHQIDEKMEEFEALKAALKQADPEGSVGALKALVDKLSTTAREELDIR 128
E ++ A+ A+ +++EKM++ E LK+ K + + + K +EE D++
Sbjct: 614 EEKDAKAKADAAKQELEEKMQKDEKLKSESKPKPLKEKIVKKEVKAKKPEEKKKEEKDVK 673
Query: 129 QEKSRLETQQEDVLRRMEPLR 149
+E ++ + ++E + + E ++
Sbjct: 674 KESAKPDRKEEKAVIKKEKVK 694
>CENF_HUMAN (P49454) CENP-F kinetochore protein (Centromere protein F)
(Mitosin) (AH antigen)
Length = 3210
Score = 34.7 bits (78), Expect = 0.096
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 20/133 (15%)
Query: 22 ELHSSLSLAEELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTARVFFAE 81
+L A+E + LL N S+ + L L+EA +EH+E ++ FAE
Sbjct: 1038 DLSQKYKAAQEKNSKLECLL--NECTSLCENRKNELEQLKEAFA--KEHQEFLTKLAFAE 1093
Query: 82 HQIDEKMEEFEALKAALK------QADPEGSVGALKALVDKLSTTAREELDIRQEKSRLE 135
+ M E E ++ AL+ Q + + G LK +E + +++E+++++
Sbjct: 1094 ERNQNLMLELETVQQALRSEMTDNQNNSKSEAGGLK----------QEIMTLKEEQNKMQ 1143
Query: 136 TQQEDVLRRMEPL 148
+ D+L+ E L
Sbjct: 1144 KEVNDLLQENEQL 1156
>YA49_MYCPN (P75065) Hypothetical protein MPN049 (D09_orf632)
Length = 632
Score = 33.5 bits (75), Expect = 0.21
Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 22 ELHSSLSLAEELTGLINQLLSRNIIASVKTPLQEFLSLLREAV--PLYEEHRELTARVFF 79
EL +S S L QL + ++ + + + + + AV L++ +LT+ +
Sbjct: 245 ELQASFSKVGN--NLTAQLFWKPVVNKLTSGENDLTHIAQTAVGESLFDSRVDLTSSIIN 302
Query: 80 AEHQIDEKMEEFEALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQE 139
E I ++FE AL +A+ E ++ KA ++++ E+ R+E RL+ +Q+
Sbjct: 303 NEAAIKTTQQQFETEVLALFKAEREKALAEYKAEQERIAKELEEQ---RKELERLKKEQQ 359
Query: 140 DVLRRMEPL 148
+ +E L
Sbjct: 360 NKQELVESL 368
>MYHB_RABIT (P35748) Myosin heavy chain, smooth muscle isoform (SMMHC)
Length = 1972
Score = 33.5 bits (75), Expect = 0.21
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 54 QEFLSLLREAVPLYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQADPEGSVGALKAL 113
+E S L L +E R L AR+ E +++E+ EA+ +++A + + L
Sbjct: 1715 EELASSLSGRNALQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATQQA-----EQL 1769
Query: 114 VDKLST---TAREELDIRQEKSRLETQQEDVLRRME 146
++L+T TA++ RQ+ R + + L+ ME
Sbjct: 1770 SNELATERSTAQKNESARQQLERQNKELKSKLQEME 1805
>MUKB_VIBVY (Q7MJ64) Chromosome partition protein mukB (Structural
maintenance of chromosome related protein)
Length = 1487
Score = 33.5 bits (75), Expect = 0.21
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 26 SLSLAEELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTARVFFAEHQID 85
+L++ ++L ++ ++S + I L+E ++ L +A H + ++ +D
Sbjct: 873 ALTMLDKLAPMM-AVISDDTIGERFAELEEKIAQLADAKQFLNAHAKAVEQLESQLAVLD 931
Query: 86 EKMEEFEALKAALKQADPE-----GSVGALKALVDKLSTTA-REELDIRQEKSRLETQQE 139
E+F+AL+A + AD + + AL LV++ A + +D+ + S L Q +
Sbjct: 932 ADPEQFDALEAQYQSADSQLQALKKQIFALSDLVERRHYFAYADSVDLLSKSSELSEQLK 991
Query: 140 DVLRRMEPLRARY 152
L E R+RY
Sbjct: 992 AKLVEAERTRSRY 1004
>M18A_HUMAN (Q92614) Myosin XVIIIA (Myosin 18A) (Myosin containing PDZ
domain)
Length = 2054
Score = 33.5 bits (75), Expect = 0.21
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 21/126 (16%)
Query: 46 IASVKTPLQEFLSLL-REAVPLY-------EEHRELTARVFFAEHQIDEKMEEFEALKAA 97
IA KT L+E LS L RE + E+ EL + A Q + + L+A
Sbjct: 1723 IAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKAAVAQASRDLAQINDLQAQ 1782
Query: 98 LKQADPEGS-----VGALKALVDKL-------STTAREELDIRQEKSRLETQQEDVLRRM 145
L++A+ E + AL++ V+ L S +R+E IR+ ++RLE ++ V +R+
Sbjct: 1783 LEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAKIRELETRLEFERTQV-KRL 1841
Query: 146 EPLRAR 151
E L +R
Sbjct: 1842 ESLASR 1847
>YL17_CAEEL (Q11102) Hypothetical protein C02F12.7 in chromosome X
Length = 1130
Score = 33.1 bits (74), Expect = 0.28
Identities = 27/136 (19%), Positives = 59/136 (42%), Gaps = 2/136 (1%)
Query: 22 ELHSSLSLAEELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRE-LTARVFFA 80
E SL +E G ++ R + +T L L + + +H E L +
Sbjct: 249 EERKSLRTEKERLGETFEMKLRRAQSLYETELTAAKMLYTKELEALRDHEEALKEELLAR 308
Query: 81 EHQIDEKMEEFEALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQED 140
+ + ++++E + L++ + D + AL KL +E + +E +++T+ D
Sbjct: 309 QDEFHDRLQELQ-LQSKRSREDLVSCKNDVTALEKKLHNKEKEVQTLTKELDQVKTETND 367
Query: 141 VLRRMEPLRARYDSYR 156
+RR+ + + + YR
Sbjct: 368 KIRRLTEVTSEFAEYR 383
>Y7J3_ANASP (Q05070) Hypothetical protein alr4393 precursor
Length = 496
Score = 33.1 bits (74), Expect = 0.28
Identities = 36/139 (25%), Positives = 62/139 (43%), Gaps = 21/139 (15%)
Query: 22 ELHSSLSLAEELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTARVFFAE 81
EL S + + L G + QL KT + + ++A+ + REL R +
Sbjct: 168 ELQSVYNQRKALQGAVEQL---------KTERRRLYAEAKKAIE--QRDRELANR----Q 212
Query: 82 HQIDEKMEEFEALKAALKQADPEGSVGALKALVDK--LSTTAREELDIRQEK--SRLETQ 137
I+++ E + AL+Q D + + L ++ L REE+ ++E LETQ
Sbjct: 213 QAIEQRDRELANRQQALQQRDQK--ISQLDKIIQNRNLEIAQREEVIAKRESRLKELETQ 270
Query: 138 QEDVLRRMEPLRARYDSYR 156
Q+ + + + L Y SYR
Sbjct: 271 QDYLEQEVARLEKYYQSYR 289
>LPA2_MOUSE (Q8BSS9) Liprin-alpha 2 (Protein tyrosine phosphatase
receptor type f polypeptide-interacting protein alpha 2)
(PTPRF-interacting protein alpha 2)
Length = 1257
Score = 33.1 bits (74), Expect = 0.28
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 22 ELHSSLSLAEELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTARVFFAE 81
+L L LAE+ L + + V+ L + ++ L +A E H + R+ E
Sbjct: 384 QLQERLELAEQK--LQQTMRKAETLPEVEAELAQRIAALTKAE---ERHGNIEERMRHLE 438
Query: 82 HQIDEKMEEFEALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQEDV 141
Q++EK +E + + K + L VD+L T + E L + ++ ++++V
Sbjct: 439 GQLEEKNQELQRARQREKMNEEHNK--RLSDTVDRLLTESNERLQLHLKERMAALEEKNV 496
Query: 142 L 142
L
Sbjct: 497 L 497
>FL10_CHLRE (P46869) Kinesin-like protein FLA10 (KHP1 protein)
Length = 786
Score = 33.1 bits (74), Expect = 0.28
Identities = 18/67 (26%), Positives = 41/67 (60%), Gaps = 1/67 (1%)
Query: 84 IDEKMEEFEALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQEDVLR 143
I+++ +E L++ +K+ + + VG + L +K+ ++ DI++E + + Q+E+ R
Sbjct: 491 IEKEKQEKAVLESRIKEMEGKIVVGGVNML-EKVDELKQKSEDIKREAAIRKRQEEEAKR 549
Query: 144 RMEPLRA 150
R+E L+A
Sbjct: 550 RLEELQA 556
>CLPB_AQUAE (O67588) Chaperone clpB
Length = 1006
Score = 33.1 bits (74), Expect = 0.28
Identities = 27/103 (26%), Positives = 48/103 (46%)
Query: 31 EELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTARVFFAEHQIDEKMEE 90
+E+ I L + I A++K ++ L E L +E +EL +V E +I E ++
Sbjct: 546 QEIERKIKALEEQIIEANLKGDYEKEAQLKIEKAKLEKEKQELLGKVGGVEAKIAELKKK 605
Query: 91 FEALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQEKSR 133
E L +K+A +G L + + +E + QEKS+
Sbjct: 606 IEELDEKIKEAAEKGDYEKEAELKIEKAKLEKELKKLEQEKSK 648
>CALD_CHICK (P12957) Caldesmon (CDM)
Length = 771
Score = 33.1 bits (74), Expect = 0.28
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 61 REAVPLYEEHRELTARVFFAEHQ--IDEKMEEFEALKAALKQADPEGSVGALKALVDKLS 118
RE EE + R E + +E+ + E KAA ++A E KA ++
Sbjct: 318 RERAKAEEERKAAEERAKAEEERKAAEERAKAEEERKAAEERAKAEKE---RKAAEERER 374
Query: 119 TTAREELDIRQEKSRLETQQEDVLRRMEPLRARYDSYRAN 158
A EE +EK+RLE ++ ++ME +A+ + +AN
Sbjct: 375 AKAEEEKRAAEEKARLEAEKLKEKKKMEEKKAQEEKAQAN 414
>TRHY_RABIT (P37709) Trichohyalin
Length = 1407
Score = 32.7 bits (73), Expect = 0.37
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 60 LREAVPLYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQADPEGSVGALKALVDKLST 119
LRE L +E E R + + K+ E E L L+Q + E + L ++
Sbjct: 606 LREEEQLLQEREEERLR----RQERERKLREEEQL---LRQEEQELRQERERKLREEEQL 658
Query: 120 TAREELDIRQEKSRLETQQEDVLRRMEPLRAR 151
REE ++RQE+ R ++E +L+ E R R
Sbjct: 659 LRREEQELRQERERKLREEEQLLQEREEERLR 690
Score = 32.0 bits (71), Expect = 0.62
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 54 QEFLSLLREAVPLYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQADPEGSVGALKAL 113
QE LRE L +E E R + + K+ E E L L+Q + E + L
Sbjct: 816 QERERKLREEEQLLQEREEERLR----RQERERKLREEEQL---LRQEEQELRQERARKL 868
Query: 114 VDKLSTTAREELDIRQEKSRLETQQEDVLRRME 146
++ +EE ++RQE+ R ++E +LR+ E
Sbjct: 869 REEEQLLRQEEQELRQERDRKLREEEQLLRQEE 901
Score = 32.0 bits (71), Expect = 0.62
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 54 QEFLSLLREAVPLYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQADPEGSVGALKAL 113
QE LRE L +E E R + K+ E E L L+Q + E + L
Sbjct: 1164 QERERKLREEEQLLQEREEERLR----RQERARKLREEEQL---LRQEEQELRQERARKL 1216
Query: 114 VDKLSTTAREELDIRQEKSRLETQQEDVLRRME 146
++ +EE ++RQE+ R ++E +LRR E
Sbjct: 1217 REEEQLLRQEEQELRQERDRKFREEEQLLRREE 1249
Score = 29.3 bits (64), Expect = 4.0
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 54 QEFLSLLREAVPLYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQADPEGSVGALKAL 113
QE LRE L +E E R + K+ E E L L+Q + E + L
Sbjct: 668 QERERKLREEEQLLQEREEERLR----RQERARKLREEEQL---LRQEEQELRQERERKL 720
Query: 114 VDKLSTTAREELDIRQEKSRLETQQEDVLRRMEPLRAR 151
++ REE +RQE+ R ++E +L+ E R R
Sbjct: 721 REEEQLLRREEQLLRQERDRKLREEEQLLQESEEERLR 758
>RA50_PYRHO (O58687) DNA double-strand break repair rad50 ATPase
Length = 879
Score = 32.7 bits (73), Expect = 0.37
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 21/117 (17%)
Query: 46 IASVKTPLQEFLSLLREAV-----PLYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQ 100
+A ++T +++ S L E YEE RE ++ ++ K+EE E +
Sbjct: 635 LAKIETDIEKVTSQLNELQRKFDQKKYEEKREKMMKLSMEIKGLETKLEELERRR----- 689
Query: 101 ADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQEDVLRRMEPLRARYDSYRA 157
+K+ ++KL +E + E +L ++R+E LR + Y+A
Sbjct: 690 -------DEIKSTIEKLKEERKERESAKMELEKLNI----AIKRIEELRGKIKEYKA 735
>MYHB_HUMAN (P35749) Myosin heavy chain, smooth muscle isoform (SMMHC)
Length = 1972
Score = 32.7 bits (73), Expect = 0.37
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 54 QEFLSLLREAVPLYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQADPEGSVGALKAL 113
+E S L L +E R L AR+ E +++E+ EA+ +++A + + L
Sbjct: 1715 EELASSLSGRNALQDEKRRLEARIAQLEEELEEEQGNMEAMSDRVRKATQQA-----EQL 1769
Query: 114 VDKLST---TAREELDIRQEKSRLETQQEDVLRRME 146
++L+T TA++ RQ+ R + L ME
Sbjct: 1770 SNELATERSTAQKNESARQQLERQNKELRSKLHEME 1805
>MUKB_VIBVU (Q8DAP8) Chromosome partition protein mukB (Structural
maintenance of chromosome related protein)
Length = 1487
Score = 32.7 bits (73), Expect = 0.37
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 26 SLSLAEELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTARVFFAEHQID 85
+L++ ++L ++ ++S + I L+E ++ L +A H + ++ +D
Sbjct: 873 ALTMLDKLAPMM-AVISDDTIGERFAELEEKIAQLADAKQFLGAHAKAVEQLESQLAVLD 931
Query: 86 EKMEEFEALKAALKQADPE-----GSVGALKALVDKLSTTA-REELDIRQEKSRLETQQE 139
E+F+AL+A + AD + + AL LV++ A + +D+ + S L Q +
Sbjct: 932 ADPEQFDALEAQYQSADSQLQALKKQIFALSDLVERRHYFAYADSVDLLSKSSELSEQLK 991
Query: 140 DVLRRMEPLRARY 152
L E R+RY
Sbjct: 992 AKLVEAERARSRY 1004
>LZT2_HUMAN (Q9BRK4) Leucine zipper putative tumor suppressor 2
(Protein LAPSER1)
Length = 669
Score = 32.7 bits (73), Expect = 0.37
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 53 LQEFLSLLREAVPLYEEHRELTARVFFAEHQIDEKMEEFEALKAALKQADPEGSVGALKA 112
LQE L R L E REL R+ + ++ +K E LK LK++ E
Sbjct: 412 LQEREQLERRCATLEREQRELGPRLEETKWEVCQKSGEISLLKQQLKESQAE-------- 463
Query: 113 LVDKLSTTAREELDIRQEKSRLETQQEDVLRRMEPLRAR 151
LV K S + +R+ ++ L + E RAR
Sbjct: 464 LVQKGSELVALRVALREARATLRVSEGRARGLQEAARAR 502
>LPA3_RAT (Q91Z79) Liprin-alpha 3 (Protein tyrosine phosphatase
receptor type f polypeptide-interacting protein alpha 3)
(PTPRF-interacting protein alpha 3)
Length = 1192
Score = 32.7 bits (73), Expect = 0.37
Identities = 28/115 (24%), Positives = 44/115 (37%), Gaps = 24/115 (20%)
Query: 68 EEHRELTARVFFAEHQIDEKMEEFEALKAALKQADPEGSVGALKALVDKLSTTAREELDI 127
E H R+ E Q++EK +E + + K D L VDKL + + E L +
Sbjct: 390 ERHGNFEERLRQLEAQLEEKNQELQRARQREKMNDDHNK--RLSETVDKLLSESNERLQL 447
Query: 128 R--------QEKSRLETQ--------------QEDVLRRMEPLRARYDSYRANPP 160
+EK+ L + +E +L ME ++ D R PP
Sbjct: 448 HLKERMGALEEKNSLSEEIANMKKLQDELLLNKEQLLAEMERMQMEIDQLRGRPP 502
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.132 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,186,142
Number of Sequences: 164201
Number of extensions: 569420
Number of successful extensions: 2951
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 2862
Number of HSP's gapped (non-prelim): 202
length of query: 161
length of database: 59,974,054
effective HSP length: 101
effective length of query: 60
effective length of database: 43,389,753
effective search space: 2603385180
effective search space used: 2603385180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0026.4