BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0026.17
         (369 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YHJ1_YEAST (P38766) Hypothetical helicase in SLT2-PUT2 intergeni...    51  5e-06
PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1, m...    43  0.001
YGJM_SHIFL (P67703) Putative HTH-type transcriptional regulator ...    32  2.6
YGJM_ECOLI (P67701) Putative HTH-type transcriptional regulator ...    32  2.6
YGJM_ECOL6 (P67702) Putative HTH-type transcriptional regulator ...    32  2.6

>YHJ1_YEAST (P38766) Hypothetical helicase in SLT2-PUT2 intergenic
           region
          Length = 723

 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 46/141 (32%), Positives = 72/141 (50%), Gaps = 15/141 (10%)

Query: 43  ASSGIASLLLPGGRTAHSRFCIPLQTDKTATCNIKQDSLRENLLIC---AKFIIWDEAPM 99
           AS+G+A++ + GG T H    I +  +KT    +K+   +++LL      K +I DE  M
Sbjct: 284 ASTGLAAVTI-GGSTLHKWSGIGIG-NKTIDQLVKKIQSQKDLLAAWRYTKVLIIDEISM 341

Query: 100 LNKNCFEALNRTLCDIMRQEDESNMDKPFGGKVVVLGGDFRQILPVIPKGGRQDIVSATV 159
           ++ N  + L +    I + +D      PFGG  +VL GDF Q LP + K    ++V    
Sbjct: 342 VDGNLLDKLEQIARRIRKNDD------PFGGIQLVLTGDFFQ-LPPVAKKDEHNVVKFCF 394

Query: 160 NSSDLWKYC--KVLKLTKNMR 178
             S++WK C  K + LTK  R
Sbjct: 395 -ESEMWKRCIQKTILLTKVFR 414


>PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1,
           mitochondrial precursor
          Length = 805

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 13/126 (10%)

Query: 43  ASSGIASLLLPGGRTAHSRFCIPLQTDKT--ATCNIKQDSLRENLLICAKFIIWDEAPML 100
           AS+G+A+  + GG T HS   + L  +        IK++    N  +  + +I DE  M+
Sbjct: 364 ASTGLAACNI-GGVTLHSFAGVGLARESVDLLVSKIKKNKKCVNRWLRTRVLIIDEVSMV 422

Query: 101 NKNCFEALNRTLCDIMRQEDESNMDKPFGGKVVVLGGDFRQILPVIPKGGRQDIVSATVN 160
           +    + L   +  ++R++      KPFGG  +VL GDF Q LP +P+ G++   S    
Sbjct: 423 DAELMDKLEE-VARVIRKDS-----KPFGGIQLVLTGDFFQ-LPPVPENGKE---SKFCF 472

Query: 161 SSDLWK 166
            S  WK
Sbjct: 473 ESQTWK 478


>YGJM_SHIFL (P67703) Putative HTH-type transcriptional regulator
           ygjM
          Length = 138

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 14/36 (38%), Positives = 22/36 (60%)

Query: 207 ESNERGESDIEIPKDLLIHDSENPLLDLIDLHIPIW 242
           ++ E+    +E+   LL++D ENPLLDL+   I  W
Sbjct: 25  QNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAW 60


>YGJM_ECOLI (P67701) Putative HTH-type transcriptional regulator
           ygjM
          Length = 138

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 14/36 (38%), Positives = 22/36 (60%)

Query: 207 ESNERGESDIEIPKDLLIHDSENPLLDLIDLHIPIW 242
           ++ E+    +E+   LL++D ENPLLDL+   I  W
Sbjct: 25  QNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAW 60


>YGJM_ECOL6 (P67702) Putative HTH-type transcriptional regulator
           ygjM
          Length = 138

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 14/36 (38%), Positives = 22/36 (60%)

Query: 207 ESNERGESDIEIPKDLLIHDSENPLLDLIDLHIPIW 242
           ++ E+    +E+   LL++D ENPLLDL+   I  W
Sbjct: 25  QNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAW 60


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.342    0.152    0.494 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,090,544
Number of Sequences: 164201
Number of extensions: 1583476
Number of successful extensions: 4585
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4579
Number of HSP's gapped (non-prelim): 8
length of query: 369
length of database: 59,974,054
effective HSP length: 112
effective length of query: 257
effective length of database: 41,583,542
effective search space: 10686970294
effective search space used: 10686970294
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 66 (30.0 bits)