BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0026.14
         (597 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP13...    44  0.001
YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I      41  0.010
PT09_YEAST (P32522) PET309 protein, mitochondrial precursor            34  1.2
FTSY_AQUAE (O67066) Cell division protein ftsY homolog                 34  1.2
YAD3_SCHPO (Q09829) Hypothetical protein C4G8.03c in chromosome I      33  2.1
TRPD_METTM (P26925) Anthranilate phosphoribosyltransferase (EC 2...    32  3.6
RUVB_CAMJE (Q9PMT7) Holliday junction DNA helicase ruvB                31  8.1

>LPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)
           (Leucine-rich PPR-motif containing protein)
          Length = 1273

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 34/138 (24%), Positives = 60/138 (42%), Gaps = 4/138 (2%)

Query: 369 DLISWNGMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVELLTACSHAGLVDEGIQYF 428
           D+  +N ++  Y  + Y     +   KM+E   Q N VTY  L+ +  + G + EG    
Sbjct: 40  DVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCNVGDI-EGASKI 98

Query: 429 DKLLKNRSIQVKEDHYACLVDLCGRAGRLKEA---FYIIEGLGVKLSLSVWGPLLAGCNV 485
              +K + + V E  ++ LV    RAG ++ A     ++   G++     +  LL     
Sbjct: 99  LGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTYLALLNAYAE 158

Query: 486 HGNADIGKLVAKKILKVE 503
            G+ D  K   +K+ K E
Sbjct: 159 KGDIDHVKQTLEKVEKFE 176



 Score = 36.2 bits (82), Expect = 0.25
 Identities = 30/145 (20%), Positives = 68/145 (46%), Gaps = 10/145 (6%)

Query: 43  MKRCNSDISRLCKEGRTDHARKLFDQMPQRDKHLWTT--MIDGYIKCGAIKEARKLFDQP 100
           + R +  + +L ++G TD  +K  D + Q    +     +   +++ G  KEA+K+ + P
Sbjct: 734 LPRIHDVLCKLVEKGETDLIQKAMDFVSQEQGEMVMLYDLFFAFLQTGNYKEAKKIIETP 793

Query: 101 DAKKSVVTWTTMVNGYVKLNQIEEAESL------FYEMPERNELSWNIMIGGYGQNGQIE 154
             +          +  V  NQ+E  E L       +E  +R+++ +N ++  Y  NG  +
Sbjct: 794 GIRARSARLQWFCDRCVANNQVETLEKLVELTQKLFEC-DRDQMYYN-LLKLYKINGDWQ 851

Query: 155 KALDLFRRMPKRNLVSWNIIIKALA 179
           +A  ++ ++ + N++     ++ LA
Sbjct: 852 RADAVWNKIQEENVIPREKTLRLLA 876


>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I
          Length = 1261

 Score = 40.8 bits (94), Expect = 0.010
 Identities = 47/247 (19%), Positives = 102/247 (41%), Gaps = 18/247 (7%)

Query: 203  NVVSWNAMITGYAQNRRLDEALELFERMPERDM----ASWNAMLTGFFQNGELNRAEKLF 258
            +V  +NA+++   + RR  E  +LF+ M E  +     ++  ++    + G+ + AEKLF
Sbjct: 925  SVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLF 984

Query: 259  AELP-----QKDVITWTSMMTGYAQHGLSEEALKMFTKMQANGGLKPNNGTFVTVLGACS 313
            AE+      Q  V  + +M+    Q   + E    +        ++P++ T+  ++ A  
Sbjct: 985  AEMENQPNYQPRVAPYNTMIQFEVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMDAYG 1044

Query: 314  GLASLTEG--QQIHQLISKTGFQENTRVVSALINMYSK-CGELHIARKIFDDGLLR---- 366
             L  +  G  + + +L+ +T     +   +A I++      ++  A   + + L +    
Sbjct: 1045 TLKPVNVGSVKAVLELMERTDVPILSMHYAAYIHILGNVVSDVQAATSCYMNALAKHDAG 1104

Query: 367  --QRDLISWNGMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVELLTACSHAGLVDEG 424
              Q D   +   I +   +    E I + + M+      N      L+   +  G++ + 
Sbjct: 1105 EIQLDANLFQSQIESLIANDRIVEGIQIVSDMKRYNVSLNAYIVNALIKGFTKVGMISKA 1164

Query: 425  IQYFDKL 431
              YFD L
Sbjct: 1165 RYYFDLL 1171



 Score = 33.9 bits (76), Expect = 1.2
 Identities = 39/205 (19%), Positives = 89/205 (43%), Gaps = 11/205 (5%)

Query: 256  KLFAELPQKDVITWTSMMTGYAQHGLSEEA---LKMFTKMQANGGLKPNNGTFVTVLGAC 312
            K+   +P+    T+  ++    + G +++A   L +F + + +  +KP+   +  VL   
Sbjct: 880  KMLGYIPRAS--TFAHLINNSTRRGDTDDATTALNIFEETKRHN-VKPSVFLYNAVLSKL 936

Query: 313  SGLASLTEGQQIHQLISKTGFQENTRVVSALINMYSKCGELHIARKIF---DDGLLRQRD 369
                  TE  ++ Q + ++G    +     +IN   + G+  +A K+F   ++    Q  
Sbjct: 937  GRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMENQPNYQPR 996

Query: 370  LISWNGMIAAYAHHGYGNE-AINLFNKMQELGFQANDVTYVELLTACSHAGLVDEG-IQY 427
            +  +N MI       +  E A+  +N++     + +  TY  L+ A      V+ G ++ 
Sbjct: 997  VAPYNTMIQFEVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMDAYGTLKPVNVGSVKA 1056

Query: 428  FDKLLKNRSIQVKEDHYACLVDLCG 452
              +L++   + +   HYA  + + G
Sbjct: 1057 VLELMERTDVPILSMHYAAYIHILG 1081



 Score = 31.2 bits (69), Expect = 8.1
 Identities = 26/106 (24%), Positives = 49/106 (45%), Gaps = 6/106 (5%)

Query: 318  LTEGQQIHQLISKTGFQENTRVVSALINMYSKCGELHIARKIFD----DGLLRQRDLISW 373
            + EG QI   + +     N  +V+ALI  ++K G +  AR  FD    +G +  ++  ++
Sbjct: 1126 IVEGIQIVSDMKRYNVSLNAYIVNALIKGFTKVGMISKARYYFDLLECEG-MSGKEPSTY 1184

Query: 374  NGMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVELLTACSHAG 419
              M+ AY     G +A+ +  +++   +    V  +  L   SH G
Sbjct: 1185 ENMVRAYLSVNDGRKAMEIVEQLKRKRYPLPVVNRISSLVN-SHMG 1229


>PT09_YEAST (P32522) PET309 protein, mitochondrial precursor
          Length = 965

 Score = 33.9 bits (76), Expect = 1.2
 Identities = 24/113 (21%), Positives = 53/113 (46%), Gaps = 6/113 (5%)

Query: 343 LINMYSKCGELHIARKIFDDGLLRQRDLISWNGMIAA--YAHHGYGNEA--INLFNKMQE 398
           L+   ++ GEL    K++    L +R +I    ++ +  YAH+  G+ A   + F   ++
Sbjct: 352 LMYTMARIGELDSVNKLYTQ--LLRRGMIPTYAVLQSLLYAHYKVGDFAACFSHFELFKK 409

Query: 399 LGFQANDVTYVELLTACSHAGLVDEGIQYFDKLLKNRSIQVKEDHYACLVDLC 451
                +  T+  +L        +D   +   +L ++ S+++ E H+A L+ +C
Sbjct: 410 YDITPSTATHTIMLKVYRGLNDLDGAFRILKRLSEDPSVEITEGHFALLIQMC 462


>FTSY_AQUAE (O67066) Cell division protein ftsY homolog
          Length = 461

 Score = 33.9 bits (76), Expect = 1.2
 Identities = 60/289 (20%), Positives = 119/289 (40%), Gaps = 31/289 (10%)

Query: 50  ISRLCKEGRTDHARKLFDQMPQRDKHLWTTMIDGYIKCGAIKEARKLFDQPDAKKSVVTW 109
           I  L K+G+ + A K+  +   + + L   + + Y++ G + +A  L  +   K      
Sbjct: 22  ILELIKQGKKEKAEKILKKYASQREDLAELLFELYVQEGKLVQAYPLLKKYGDKIGKAKE 81

Query: 110 TTMVNGYVKLNQIEEAESLFYEMPERNELSWNIMIGGYGQNGQIEKALDLFRRMPKRNLV 169
              V  Y  + + ++A   F ++ +   L +N+    Y Q  + +KAL+  +R  K  LV
Sbjct: 82  RAKV--YQAVGEYQKAIEEFLKVGDFESL-YNV-AKIYHQLEKPDKALEYAQRAEK--LV 135

Query: 170 SW-------NIIIKALARCGRIEDAQWHLI-RCRKGMMPLRNVVSWNAMITGYAQNRRLD 221
            +       N I +     G IE+ +  ++ + R+G+   +  V +  +  G    R++D
Sbjct: 136 PYEKKEELENFITQLKKELGLIEEKKESILDKLRRGLQKTKEAVEFGVLFRG----RKVD 191

Query: 222 EALELFERMPERDMASWNAMLTGFFQNGELNRAEKLFAELPQKDVITWTSMMTGYAQHGL 281
           E  E FE + E  + +   + T       +   EKL  E  +K++     +     +  L
Sbjct: 192 E--EFFEELEEMLVKADVGVKTA------VELTEKLRKEAIRKNIKEGEKI-----KELL 238

Query: 282 SEEALKMFTKMQANGGLKPNNGTFVTVLGACSGLASLTEGQQIHQLISK 330
            +E  ++    Q    +    G  +  +G      + T G+  HQL  K
Sbjct: 239 KKELKELLKNCQGELKIPEKVGAVLLFVGVNGSGKTTTIGKLAHQLKQK 287


>YAD3_SCHPO (Q09829) Hypothetical protein C4G8.03c in chromosome I
          Length = 780

 Score = 33.1 bits (74), Expect = 2.1
 Identities = 35/141 (24%), Positives = 60/141 (41%), Gaps = 16/141 (11%)

Query: 7   PPLSFI------LMHAPKLNTHPTYILRTRLASTFSPNPNSEMKRCNSDISRLCKEGRTD 60
           PPL  +      L+H   L+ HP +       ST S N +++  +  SD S L  + R  
Sbjct: 232 PPLPVLKNSERNLLHRQLLSNHPFFSQNNVSLSTNSKNYSTDFTKIQSDSSLL--QNRQQ 289

Query: 61  HARKLFDQMPQRDKHLWTTMIDGYIKCGAIK--EARKLFDQPDAKKSVVTWTTMVNGYVK 118
           + R   DQ+     HL  + I    +  +++  E+RKL  + D        +  +N   +
Sbjct: 290 NHRIETDQLSHFPDHLDPSRIPSPYQPSSLQPLESRKLHSKVDVH------SKKLNALSQ 343

Query: 119 LNQIEEAESLFYEMPERNELS 139
           LN I  +E++       + LS
Sbjct: 344 LNPILRSENVLQNDNHHSSLS 364


>TRPD_METTM (P26925) Anthranilate phosphoribosyltransferase (EC
           2.4.2.18)
          Length = 350

 Score = 32.3 bits (72), Expect = 3.6
 Identities = 29/97 (29%), Positives = 42/97 (42%), Gaps = 10/97 (10%)

Query: 402 QANDVTYVELLTACSHAGLVDEGIQYFDKLLKNRSIQVKEDHYACLVDLCGRAG-RLKE- 459
           +  DV    LLTA +  G   + I  F + ++ R+++VK      +VD CG  G R K  
Sbjct: 32  EMGDVQIAALLTALAMKGETVDEITGFARAMRERAVKVKIPESMRVVDACGTGGDRFKSY 91

Query: 460 -----AFYIIEGLGVKLSLSVWGPLLAGCNVHGNADI 491
                A  I    GVK++      +   C   G ADI
Sbjct: 92  NVSTAAAIIAAAAGVKVAKHGNRAVTGSC---GGADI 125


>RUVB_CAMJE (Q9PMT7) Holliday junction DNA helicase ruvB
          Length = 335

 Score = 31.2 bits (69), Expect = 8.1
 Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 387 NEAINLFNKMQELGFQANDVTYVELLTA 414
           NEA+N    + ELGF A D+ Y+ELLTA
Sbjct: 245 NEALNSLG-VNELGFDAMDLRYLELLTA 271


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,766,306
Number of Sequences: 164201
Number of extensions: 2979858
Number of successful extensions: 6682
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6665
Number of HSP's gapped (non-prelim): 20
length of query: 597
length of database: 59,974,054
effective HSP length: 116
effective length of query: 481
effective length of database: 40,926,738
effective search space: 19685760978
effective search space used: 19685760978
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)