BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0024.11
         (148 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YDM6_SCHPO (P87137) Hypothetical protein C57A7.06 in chromosome I      33  0.29
SYS_FUSNN (Q8RH11) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--...    30  1.5
IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3 s...    30  1.5
HTPG_PASMU (Q9CM20) Chaperone protein htpG (Heat shock protein h...    30  1.5
SLBP_CAEEL (Q09599) Histone RNA hairpin-binding protein (Histone...    30  1.9
YZ07_AQUAE (O66402) Hypothetical protein AA07                          30  2.5
Y434_RICPR (O05965) Hypothetical protein RP434                         28  9.5
Y330_METJA (Q57776) Hypothetical protein MJ0330                        28  9.5
R14B_STAAW (P66416) 30S ribosomal protein S14-2                        28  9.5
R14B_STAAN (P66415) 30S ribosomal protein S14-2                        28  9.5
R14B_STAAM (P66414) 30S ribosomal protein S14-2                        28  9.5
NEK3_HUMAN (P51956) Serine/threonine-protein kinase Nek3 (EC 2.7...    28  9.5
BAS1_YEAST (P22035) MYB-like DNA-binding protein BAS1                  28  9.5

>YDM6_SCHPO (P87137) Hypothetical protein C57A7.06 in chromosome I
          Length = 929

 Score = 32.7 bits (73), Expect = 0.29
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 34  LREILASEFQNSKQISKIWEKRYLKSQKRWFRSKEISVARLPESEYYRAYSPEFRNETLV 93
           +RE++  E + +K+++KI  K Y K +K     KE  +A +P+SE       +  NE + 
Sbjct: 436 MRELMFREERKAKRVAKIKSKTYRKIRK---NRKEKEMALIPKSE------EDLENERIK 486

Query: 94  EGKIKRIFKFSKDSKSHLKRSSKS-EIAYSGHARRKAAN 131
             + + + + ++  K+    + K  E A  G   R+A N
Sbjct: 487 SEEARALERMTQRHKNTSSWTRKMLERASHGEGTREAVN 525


>SYS_FUSNN (Q8RH11) Seryl-tRNA synthetase (EC 6.1.1.11)
           (Serine--tRNA ligase) (SerRS)
          Length = 421

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 19/58 (32%), Positives = 32/58 (54%), Gaps = 3/58 (5%)

Query: 65  RSKEISVARLPESEYYRAYSPEFRNETLVEGK-IKRIFKFSKDSKSHLKRSSKSEIAY 121
           R + +  A LP+  YY AYSP FR E    GK +K + +  + +K  + + + +E +Y
Sbjct: 239 RKEILEQAELPK--YYTAYSPCFRREAGSYGKDVKGLIRLHQFNKVEMVKITDAESSY 294


>IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3
           subunit 10 (eIF-3 theta) (Eukaryotic translation
           initiation factor 3 large subunit) (eIF3a) (p114)
          Length = 987

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 4/116 (3%)

Query: 31  QGILREILASEFQNSKQISKIWEKRYLKSQKRWFRSKEISVARLPESEYYRAYSPEFRNE 90
           Q ILREI   E + ++ + +  EKR  K +K+     E  V +  +S   RA + + +  
Sbjct: 618 QRILREIEEKELEEAQALLEETEKRMKKGKKKPLLDGE-KVTK--QSVKERALTEQLKER 674

Query: 91  TLVEGKIKRIFKFSKDSKSHLKRSSKSEIAYSGHARRKAANSCHAYTDSTRESEIN 146
             +E K++++ K + D     KR   + +  + + RR          +  RE E++
Sbjct: 675 QEMEKKLQKLAK-TMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELS 729


>HTPG_PASMU (Q9CM20) Chaperone protein htpG (Heat shock protein
           htpG) (High temperature protein G)
          Length = 631

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 24  KFRNHVHQGILREILASEFQN-SKQISKIWEKRYLKSQKRWFRSKEISVARLPESEYYRA 82
           K+ +H+  G+  EILA E+ +  K+    WEK   K+Q  W R+K   ++     E+Y+ 
Sbjct: 200 KYSDHI--GLPVEILAKEYDDEGKETGIKWEK-INKAQALWTRAKN-EISEEEYQEFYKH 255

Query: 83  YSPEFRNETL 92
            S +F +  L
Sbjct: 256 LSHDFTDPLL 265


>SLBP_CAEEL (Q09599) Histone RNA hairpin-binding protein (Histone
           stem-loop binding protein)
          Length = 367

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 24/85 (28%), Positives = 40/85 (46%), Gaps = 7/85 (8%)

Query: 65  RSKEISVARLPESEYYRAYSPEFRNETLVEGKIKR----IFKFSKDS-KSHLKRSSKSEI 119
           RS+EI  A+  E   Y+ Y+ E      ++G+  R    +  FS+ S  + +K+  +S  
Sbjct: 215 RSREIDRAK--EKAVYQRYTSEVPLRDRIKGQHPRTPNKLINFSRRSWDTQIKKWKRSLY 272

Query: 120 AYSGHARRKAANSCHAYTDSTRESE 144
            Y G     + N+   Y+DS   SE
Sbjct: 273 EYCGEEPSDSVNTSFCYSDSDALSE 297


>YZ07_AQUAE (O66402) Hypothetical protein AA07
          Length = 317

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 13  GTKSDYDFSTIKFRNHVHQGILREILASEFQ--NSKQISKIWEKRY--LKSQKRWFRS 66
           GT++ YDF    F   V +  LRE+L  E +   +++ +K +E++   +K    WF S
Sbjct: 200 GTQTPYDFLLSSFLEEVLEETLRELLEKEIEKIEAERRAKEYEEKMEKIKEIVEWFES 257


>Y434_RICPR (O05965) Hypothetical protein RP434
          Length = 212

 Score = 27.7 bits (60), Expect = 9.5
 Identities = 13/41 (31%), Positives = 24/41 (57%)

Query: 18  YDFSTIKFRNHVHQGILREILASEFQNSKQISKIWEKRYLK 58
           Y F  +KF N+        I A+  ++ K++S++ +KRYL+
Sbjct: 97  YSFDPVKFINNAKTAFQMIIEAAYKKDVKELSELIDKRYLE 137


>Y330_METJA (Q57776) Hypothetical protein MJ0330
          Length = 549

 Score = 27.7 bits (60), Expect = 9.5
 Identities = 24/76 (31%), Positives = 30/76 (38%), Gaps = 4/76 (5%)

Query: 7   VTTIPKGTKSDYDFSTIKFRNHVHQGILREILASEFQNSKQISKIWEKRYLKSQKRWFRS 66
           V T   G K DY  S  KF NH+      +     FQ+   I K   +R  K  K W   
Sbjct: 387 VLTPTLGHKIDY-LSLEKFYNHLQNHFSVKFTFDRFQSEYFIQKFKGERLSKHVKLWTTF 445

Query: 67  KEISVARLPESEYYRA 82
           +E+        EYY A
Sbjct: 446 QELVEG---TKEYYDA 458


>R14B_STAAW (P66416) 30S ribosomal protein S14-2
          Length = 89

 Score = 27.7 bits (60), Expect = 9.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 7  VTTIPKGTKSDYDFSTIKFRNHVHQG 32
          VT  P+G    ++ S I FR H H+G
Sbjct: 54 VTGRPRGVLRKFEMSRIAFREHAHKG 79


>R14B_STAAN (P66415) 30S ribosomal protein S14-2
          Length = 89

 Score = 27.7 bits (60), Expect = 9.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 7  VTTIPKGTKSDYDFSTIKFRNHVHQG 32
          VT  P+G    ++ S I FR H H+G
Sbjct: 54 VTGRPRGVLRKFEMSRIAFREHAHKG 79


>R14B_STAAM (P66414) 30S ribosomal protein S14-2
          Length = 89

 Score = 27.7 bits (60), Expect = 9.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 7  VTTIPKGTKSDYDFSTIKFRNHVHQG 32
          VT  P+G    ++ S I FR H H+G
Sbjct: 54 VTGRPRGVLRKFEMSRIAFREHAHKG 79


>NEK3_HUMAN (P51956) Serine/threonine-protein kinase Nek3 (EC
           2.7.1.37) (NimA-related protein kinase 3) (HSPK 36)
          Length = 506

 Score = 27.7 bits (60), Expect = 9.5
 Identities = 24/86 (27%), Positives = 43/86 (49%), Gaps = 4/86 (4%)

Query: 36  EILASEFQNSKQISKIWEKRYLKSQKRWFRSKEISVARLPESEYYRAYSP-EFRNETLVE 94
           E +  E +NSK  +    K+   S+ R     E S  +  E +   +++  E  NE LVE
Sbjct: 275 EEVLEEIKNSKHNTP--RKKTNPSRIRIALGNEASTVQEEEQDRKGSHTDLESINENLVE 332

Query: 95  GKIKRIFKFSKDSKS-HLKRSSKSEI 119
             ++R+ +  K +KS HL+++S   +
Sbjct: 333 SALRRVNREEKGNKSVHLRKASSPNL 358


>BAS1_YEAST (P22035) MYB-like DNA-binding protein BAS1
          Length = 811

 Score = 27.7 bits (60), Expect = 9.5
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 19  DFSTIKFRNHVHQGILREILASEFQNSKQISKIWEKRYLKS 59
           D  TI+  NH+ + I  ++LA+ F+++ + SK   KR+  S
Sbjct: 69  DVKTIQQSNHLSKCIAWDVLATRFKHTVRTSKDVRKRWTGS 109


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.316    0.128    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,428,645
Number of Sequences: 164201
Number of extensions: 555013
Number of successful extensions: 1892
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1887
Number of HSP's gapped (non-prelim): 13
length of query: 148
length of database: 59,974,054
effective HSP length: 100
effective length of query: 48
effective length of database: 43,553,954
effective search space: 2090589792
effective search space used: 2090589792
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)