BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0023.8
         (85 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ATP6_ARTSF (Q37708) ATP synthase a chain (EC 3.6.3.14) (ATPase p...    30  0.84
COBS_CLOPE (Q8XLK5) Cobalamin synthase (EC 2.-.-.-)                    28  3.2
VPP4_MOUSE (Q920R6) Vacuolar proton translocating ATPase 116 kDa...    28  4.2
SCA2_HUMAN (O15127) Secretory carrier-associated membrane protei...    28  5.4
ER24_FUSSO (Q01447) Delta(14)-sterol reductase (EC 1.3.1.70) (C-...    28  5.4
EP40_MOUSE (Q8CHI8) E1A binding protein p400 (EC 3.6.1.-) (p400 ...    27  9.2

>ATP6_ARTSF (Q37708) ATP synthase a chain (EC 3.6.3.14) (ATPase
           protein 6)
          Length = 219

 Score = 30.4 bits (67), Expect = 0.84
 Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 6/51 (11%)

Query: 2   ILIGVMFFYFFFCNFIGLI------TMGLLLRIGIGDVAWLSFVLQLKTKE 46
           IL+  +F +  F NFIGL       T  L + + +    W+SF+L    KE
Sbjct: 68  ILVIALFLFILFNNFIGLFPYIFTATSHLAVTLSLAVPLWISFILYTWIKE 118


>COBS_CLOPE (Q8XLK5) Cobalamin synthase (EC 2.-.-.-)
          Length = 251

 Score = 28.5 bits (62), Expect = 3.2
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 1   MILIGVMFFYFFFCNFIGLITMGLLLRIGIGDVAWLSFVLQLKTKEEIRGRRG 53
           +IL+G+    +     I   T+G+   I I  +  +SF+L LK K+E+ G  G
Sbjct: 182 IILLGI----YVLVALITFFTLGINYLIAILAMGLISFILLLKVKKELGGING 230


>VPP4_MOUSE (Q920R6) Vacuolar proton translocating ATPase 116 kDa
           subunit a isoform 4 (V-ATPase 116-kDa isoform a4)
           (Vacuolar proton translocating ATPase 116 kDa subunit a
           kidney isoform)
          Length = 833

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 14/49 (28%), Positives = 29/49 (58%), Gaps = 1/49 (2%)

Query: 33  VAWLSFVLQLKTKEEIRGRRGMNLHLLTLLLDLMFSMLQFGYTLFLLVF 81
           +A + F + L     I  RR +N+ +L  + +++F +  FGY +F+++F
Sbjct: 549 IAHMIFGVILSLFNHIYFRRTLNI-ILQFIPEMIFMLSLFGYLVFMIIF 596


>SCA2_HUMAN (O15127) Secretory carrier-associated membrane protein 2
           (Secretory carrier membrane protein 2)
          Length = 329

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 12/31 (38%), Positives = 20/31 (63%), Gaps = 1/31 (3%)

Query: 7   MFFYFFFCNFIGLITMGLLLRIGIGDVAWLS 37
           +FF+ FFC  IG+  + L+   G+GD  W++
Sbjct: 220 VFFFVFFCQ-IGIYIIQLVGIPGLGDSGWIA 249


>ER24_FUSSO (Q01447) Delta(14)-sterol reductase (EC 1.3.1.70) (C-14
           sterol reductase) (Sterol C14-reductase)
          Length = 485

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 19  LITMGLLLRIGIGDVAWLSFVLQLKTKEEIRGRRGMNLHLLTL---LLDLMFSMLQFGYT 75
           + T G  + +  GD+ W+ FV  L+T       R + +H ++L    L +M S++  G+ 
Sbjct: 285 ITTDGFGMMLAFGDIVWVPFVYSLQT-------RYLAVHPVSLGPVGLAVMLSLIGLGFY 337

Query: 76  LF 77
           +F
Sbjct: 338 IF 339


>EP40_MOUSE (Q8CHI8) E1A binding protein p400 (EC 3.6.1.-) (p400 kDa
            SWI2/SNF2-related protein) (Domino homolog) (mDomino)
          Length = 3072

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 25   LLRIGIGDVAWLSFVLQLKTKEEIRGRRGMNLHLLTLLLDLMFSMLQFGYTLFLLV 80
            L++   G +  L+ +LQ K K E  GRR + L  + L+LD++   L F Y  ++ +
Sbjct: 1808 LVQFDSGKLEALAILLQ-KLKSE--GRRVLILSQMVLMLDILEMFLNFHYLTYVRI 1860


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.343    0.159    0.492 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,243,115
Number of Sequences: 164201
Number of extensions: 309643
Number of successful extensions: 1248
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1246
Number of HSP's gapped (non-prelim): 6
length of query: 85
length of database: 59,974,054
effective HSP length: 61
effective length of query: 24
effective length of database: 49,957,793
effective search space: 1198987032
effective search space used: 1198987032
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 58 (26.9 bits)