BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.7
(362 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
VNUA_PRVKA (P33485) Probable nuclear antigen 33 1.5
Y934_PORGI (Q7MVU9) Hypothetical UPF0313 protein PG0934 31 4.3
P121_RAT (P52591) Nuclear envelope pore membrane protein POM 121... 31 4.3
NU4M_SCYCA (O79410) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 31 4.3
FXN1_MOUSE (Q61575) Forkhead box protein N1 (Transcription facto... 31 4.3
POLG_PEMVC (Q01500) Genome polyprotein [Contains: P1 proteinase ... 31 5.6
MOKE_SCHPO (Q9Y704) Cell wall alpha-1,3-glucan synthase mok14 (E... 31 5.6
ABL_MLVAB (P00521) Tyrosine-protein kinase transforming protein ... 30 7.3
DF21_ARATH (Q8LE43) Dof zinc finger protein DOF2.1 (AtDOF2.1) 30 9.5
>VNUA_PRVKA (P33485) Probable nuclear antigen
Length = 1733
Score = 32.7 bits (73), Expect = 1.5
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 40 AVLFQIWTSVGSGGGGRRLAAMAEAAGERCFGGGGW 75
AVL + T+V SGGGG A + G GGGGW
Sbjct: 1574 AVLVMVTTAVPSGGGGAAAAGRRDRPG----GGGGW 1605
>Y934_PORGI (Q7MVU9) Hypothetical UPF0313 protein PG0934
Length = 634
Score = 31.2 bits (69), Expect = 4.3
Identities = 25/77 (32%), Positives = 35/77 (44%), Gaps = 11/77 (14%)
Query: 276 HPHSVSPVVAAAHPLDVRNLGSHYHLKVFYIRL-----IHYEVHLQNR-SLICSFVPKTT 329
HP+++ PV A + H+ F+ + I E+H R LI +TT
Sbjct: 555 HPYTLQPVYTAIK----KEEKMRQHMFFFWYKREEADKIRRELHRIGRPDLIAKLFDRTT 610
Query: 330 TSR-DPHLPPSNPSRKS 345
+SR D H PPS RKS
Sbjct: 611 SSRNDRHTPPSTQPRKS 627
>P121_RAT (P52591) Nuclear envelope pore membrane protein POM 121
(Pore membrane protein of 121 kDa) (P145)
Length = 1199
Score = 31.2 bits (69), Expect = 4.3
Identities = 29/89 (32%), Positives = 36/89 (39%), Gaps = 4/89 (4%)
Query: 10 SAPTLQTGERPSTTRTRHGGSDLSKSWSMTAVLFQIWTSVG-SGGGGRRLAA---MAEAA 65
SA T G +TT+T H GS S S T F S +GGGG L+A +
Sbjct: 1015 SATTSGFGAAAATTQTTHSGSSSSLFGSSTPSPFTFGGSAAPAGGGGFGLSATPGTGSTS 1074
Query: 66 GERCFGGGGWEKTNQMSPISATLILLTHG 94
G FG G T + +L T G
Sbjct: 1075 GTFSFGSGQSGTTGTTTSFGGSLSQNTLG 1103
>NU4M_SCYCA (O79410) NADH-ubiquinone oxidoreductase chain 4 (EC
1.6.5.3)
Length = 460
Score = 31.2 bits (69), Expect = 4.3
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 74 GWEKTNQ---MSPISATLILLTHGVQVLVRVLNSNHFAPVP 111
GW+ +NQ + P+SA L++LT + L+ + + NH P P
Sbjct: 49 GWDFSNQYLAIDPLSAPLLILTCWLLPLMILASQNHITPEP 89
>FXN1_MOUSE (Q61575) Forkhead box protein N1 (Transcription factor
winged-helix nude) (Hepatocyte nuclear factor 3 forkhead
homolog 11) (HNF-3/forkhead homolog 11) (HFH-11)
Length = 648
Score = 31.2 bits (69), Expect = 4.3
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 323 SFVPKTTTSRDPHLPPSNPSRKSFDPQHNNG 353
SFVP R P LPP +PS S DP+ G
Sbjct: 50 SFVPDGPPERTPSLPPHSPSIASPDPEQIQG 80
>POLG_PEMVC (Q01500) Genome polyprotein [Contains: P1 proteinase
(N-terminal protein); Helper component proteinase (EC
3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1);
Cytoplasmic inclusion protein (CI); 6 kDa protein 2
(6K2); Viral genome-linked p
Length = 3068
Score = 30.8 bits (68), Expect = 5.6
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 128 WRPSNHKQIDKQTSKQDSARVNSRNKAGHLGPNTGLVFNHFCSGFIYDLSNSQDGHNPPC 187
W K + K S+ V S + L P G VF+H +G + +++ + C
Sbjct: 934 WSSRKRKTRLRSNIKSRSSPVASAISSLSLKPFMGKVFSHMKAGAVCTKQGTKNFIDARC 993
Query: 188 LTISTCYAGHEQEQYNSTWLTVTFYYV 214
L IST + G ++ S + ++ +V
Sbjct: 994 LGISTYFVGSLMRKFPSAKVLLSSLFV 1020
>MOKE_SCHPO (Q9Y704) Cell wall alpha-1,3-glucan synthase mok14 (EC
2.4.1.183)
Length = 1369
Score = 30.8 bits (68), Expect = 5.6
Identities = 31/118 (26%), Positives = 52/118 (43%), Gaps = 12/118 (10%)
Query: 222 HSHKDSCLDKDYYLYNTLRYSQEQYNSALLTVTSYYTRSILPGTSSQ--CLTSKECHPHS 279
HS K +C+ L+ TL Y+ ++N + ++ T Q + C
Sbjct: 250 HSCKRTCI-----LFATLEYNIPEWNIKIKIGGLGVMAELMSKTLKQYDLVWVVPCVGDI 304
Query: 280 VSPVVAAAHPLDVRNLGSHYHLKVFYIRLIHYEVHLQNRSLICSFVPKTTTSRDPHLP 337
PV A L V+ + Y +KVFY HY+ +++ L+ S + + TS DP+ P
Sbjct: 305 TYPVAETAPSLVVKVVNQDYEVKVFY----HYKDNIK-YVLLDSPIFRKRTSHDPYPP 357
>ABL_MLVAB (P00521) Tyrosine-protein kinase transforming protein Abl
(EC 2.7.1.112) (V-abl)
Length = 746
Score = 30.4 bits (67), Expect = 7.3
Identities = 22/69 (31%), Positives = 32/69 (45%), Gaps = 3/69 (4%)
Query: 1 MGRRGTFNNSAPTLQTGERPSTTRT-RHGGSDLSKSWSMTAVLF--QIWTSVGSGGGGRR 57
+G+RGT + LQ E P+ TRT R + S+T L Q+ S SG ++
Sbjct: 396 LGKRGTRGGAGSMLQAPELPTKTRTCRRAAEQKASPPSLTPKLLRRQVTASPSSGLSHKK 455
Query: 58 LAAMAEAAG 66
A A+G
Sbjct: 456 EATKGSASG 464
>DF21_ARATH (Q8LE43) Dof zinc finger protein DOF2.1 (AtDOF2.1)
Length = 288
Score = 30.0 bits (66), Expect = 9.5
Identities = 16/55 (29%), Positives = 22/55 (39%)
Query: 149 NSRNKAGHLGPNTGLVFNHFCSGFIYDLSNSQDGHNPPCLTISTCYAGHEQEQYN 203
NS N G G G N C GF+ N+ T+ G+E++Q N
Sbjct: 177 NSTNDVGIFGGQNGTYNNSLCYGFMSGNGNNNQNEIKMASTLGMSLEGNERKQEN 231
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.132 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,219,198
Number of Sequences: 164201
Number of extensions: 1924700
Number of successful extensions: 4667
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4661
Number of HSP's gapped (non-prelim): 11
length of query: 362
length of database: 59,974,054
effective HSP length: 111
effective length of query: 251
effective length of database: 41,747,743
effective search space: 10478683493
effective search space used: 10478683493
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0023.7