BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0023.16
         (463 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SHAK_DROME (P33085) Innexin shaking-B (Passover protein)               33  2.0
RIR1_SHV21 (Q01037) Ribonucleoside-diphosphate reductase large c...    31  5.9
PVDR_PLAVS (P22290) Duffy receptor precursor (Erythrocyte bindin...    31  5.9
TOXA_PASMU (P17452) Dermonecrotic toxin (DNT) (PMT) (Mitogenic t...    31  7.7
RPC2_CHLRE (Q7PCJ6) DNA-directed RNA polymerase beta'' chain (EC...    31  7.7
ENGB_NEIMB (Q9JY03) Probable GTP-binding protein engB                  31  7.7

>SHAK_DROME (P33085) Innexin shaking-B (Passover protein)
          Length = 372

 Score = 32.7 bits (73), Expect = 2.0
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 56  LAFDVTEKYLCAWHLLRNANQNLGNPLLTKGFKNCMFRKKWDELVLNLGLQDNCWVKETY 115
           L + +T   L ++ L+    Q +GNP+      +C+  K   E VLN      CW++ TY
Sbjct: 26  LHYSITVMILMSFSLIITTRQYVGNPI------DCVHTKDIPEDVLNT----YCWIQSTY 75

Query: 116 EKRSIWV 122
             +S+++
Sbjct: 76  TLKSLFL 82


>RIR1_SHV21 (Q01037) Ribonucleoside-diphosphate reductase large
           chain (EC 1.17.4.1) (Ribonucleotide reductase)
          Length = 767

 Score = 31.2 bits (69), Expect = 5.9
 Identities = 16/48 (33%), Positives = 26/48 (53%)

Query: 246 KEWHVSVSSDNKDFKYSCMKMESRGLACEHIVDVLAHLRIEELSECFI 293
           ++W+V + +D + FKY    + S+ + C   V   A +  E LS CFI
Sbjct: 147 RDWNVEIKTDMQIFKYFYKVISSQLVCCATPVMRSAGVAGENLSSCFI 194


>PVDR_PLAVS (P22290) Duffy receptor precursor (Erythrocyte binding
            protein)
          Length = 1070

 Score = 31.2 bits (69), Expect = 5.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 162  QQLQNCVKHMRFREIEDDCHSIHGVPAMKTNLESLEMS 199
            + ++N  +   F E E+ C +IH +P M  N+E ++ S
Sbjct: 1027 KMIKNDSEEATFNEFEEYCDNIHRIPLMPNNIEHMQPS 1064


>TOXA_PASMU (P17452) Dermonecrotic toxin (DNT) (PMT) (Mitogenic
           toxin)
          Length = 1285

 Score = 30.8 bits (68), Expect = 7.7
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 288 LSECFIFKRWSKGAKDGVYSGKNIENDFWDFQKSSRCSALMDLYRALGYLNSNTAADF 345
           L+E F +  W     D +Y   N +  F     + R    M+ YR + + NS+ + DF
Sbjct: 871 LTESFDYTPW-----DAIYGDINYDEQFAAMSINERIEKCMNTYRGVAFQNSSKSIDF 923


>RPC2_CHLRE (Q7PCJ6) DNA-directed RNA polymerase beta'' chain (EC
           2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
           subunit) (RNA polymerase beta'' subunit)
          Length = 3120

 Score = 30.8 bits (68), Expect = 7.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 136 TTSRCEGFQSELGKHVHSRYNLTDFLQQLQNCVK 169
           T  + E F +    H +SRY+ TDF+Q LQN  K
Sbjct: 947 TVQQVEFFNAREQMHFNSRYSKTDFVQLLQNPFK 980


>ENGB_NEIMB (Q9JY03) Probable GTP-binding protein engB
          Length = 209

 Score = 30.8 bits (68), Expect = 7.7
 Identities = 22/68 (32%), Positives = 30/68 (43%), Gaps = 5/68 (7%)

Query: 376 TNILNLKD----PIRLRRKGRGTKNKSS-LGLTVKHVINCLIFKTPGHNKLTGTYCSQQG 430
           T I +LKD    P+ +   GR    KSS +     HV    + KTPG  +    +  Q G
Sbjct: 11  TTINHLKDLPDTPLEIAFVGRSNAGKSSAINTLTNHVRLAYVSKTPGRTQHINFFELQNG 70

Query: 431 HTMSDFEG 438
           + M D  G
Sbjct: 71  NFMVDLPG 78


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,200,377
Number of Sequences: 164201
Number of extensions: 2273677
Number of successful extensions: 4473
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4470
Number of HSP's gapped (non-prelim): 6
length of query: 463
length of database: 59,974,054
effective HSP length: 114
effective length of query: 349
effective length of database: 41,255,140
effective search space: 14398043860
effective search space used: 14398043860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)