BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0022.20
(96 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YM8H_YEAST (Q03525) Hypothetical 16.2 kDa protein in PRP24-RRN9 ... 34 0.073
TRHY_SHEEP (P22793) Trichohyalin 32 0.28
CBF5_YEAST (P33322) Centromere/microtubule binding protein CBF5 ... 32 0.28
ACIN_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in ... 32 0.28
VE2_HPV37 (Q80903) Regulatory protein E2 32 0.36
NO60_DROME (O44081) Nucleolar protein AT band 60B (Minifly protein) 32 0.36
ACIN_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in ... 32 0.36
LA_MOUSE (P32067) Lupus La protein homolog (La ribonucleoprotein... 31 0.47
HSP2_MURBR (P83212) Sperm protamine P2 31 0.47
CHDM_DROME (O97159) Chromodomain helicase-DNA-binding protein Mi... 31 0.47
YU20_ARATH (Q9ZPV5) Hypothetical UPF0120 protein At2g18220 31 0.62
MYO6_HUMAN (Q9UM54) Myosin VI 31 0.62
CYP1_BRUMA (Q27450) Peptidylprolyl isomerase 1 (EC 5.2.1.8) (Pep... 31 0.62
CVCA_PEA (P13915) Convicilin precursor 31 0.62
Y5G8_ENCCU (Q8STA9) Hypothetical protein ECU05_1680/ECU11_0050 30 0.81
SFR4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre... 30 0.81
NOP5_YEAST (Q12499) Nucleolar protein NOP58 (Nucleolar protein N... 30 0.81
NDF1_RAT (Q64289) Neurogenic differentiation factor 1 (NeuroD1) ... 30 0.81
NDF1_MESAU (Q60430) Neurogenic differentiation factor 1 (NeuroD1... 30 0.81
MNN4_YEAST (P36044) MNN4 protein 30 0.81
>YM8H_YEAST (Q03525) Hypothetical 16.2 kDa protein in PRP24-RRN9
intergenic region
Length = 142
Score = 33.9 bits (76), Expect = 0.073
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
RRR +E+D+K K+K+ + ++ T ESKKK+K + KK +++
Sbjct: 61 RRRRDEDDNKVKRKKLKKDKK-TSNDSESKKKKKKKSKKESKK 102
Score = 28.1 bits (61), Expect = 4.0
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 4 RRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
++ +++ SKK+ K+G+ + + +SK K+ + KK +E
Sbjct: 89 KKKKKKKSKKESKKGKKSKHSSDEGDKSKHKKSKKSKKHKKE 130
>TRHY_SHEEP (P22793) Trichohyalin
Length = 1549
Score = 32.0 bits (71), Expect = 0.28
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQFLHSSSTNLQ 62
RR +EE+ +++++R R Q +++EK R+++++R+ L EQ L+
Sbjct: 1377 RRAEQEEEQRRQRQRDRKFLEEEQSLQREREEEKRRVQEQDRKFLEQEEQLHREEQEELR 1436
>CBF5_YEAST (P33322) Centromere/microtubule binding protein CBF5
(Centromere-binding factor 5) (Small nucleolar RNP
protein CBF5) (H/ACA snoRNP protein CBF5) (p64')
Length = 483
Score = 32.0 bits (71), Expect = 0.28
Identities = 13/43 (30%), Positives = 25/43 (57%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
+ +E+DSKK+KK + + + + + KKEK K++ R+
Sbjct: 425 KEEVKEDDSKKEKKEKKDKKEKKEKKEKKDKKEKKEKKEKKRK 467
>ACIN_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in the
nucleus (Acinus)
Length = 1338
Score = 32.0 bits (71), Expect = 0.28
Identities = 13/43 (30%), Positives = 25/43 (57%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
+RR E E+ ++K++ R R + K++E R ++R+RE
Sbjct: 1249 KRRKEREEEEQKEREKEAERERNRQLEREKRREHSRERERDRE 1291
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/42 (33%), Positives = 27/42 (63%), Gaps = 2/42 (4%)
Query: 7 EEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLR 48
E E +++ K+R + RR+ + E K++EK ++RNR++ R
Sbjct: 1237 EAEQAERAKEREK--RRKEREEEEQKEREKEAERERNRQLER 1276
>VE2_HPV37 (Q80903) Regulatory protein E2
Length = 454
Score = 31.6 bits (70), Expect = 0.36
Identities = 15/42 (35%), Positives = 21/42 (49%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNR 44
R R+ D+ RGRGGR R P S+ + R + R+R
Sbjct: 290 RERSYSRDTSSSPDRGRGGRSRGGPETRSQSRSLSRSRSRSR 331
>NO60_DROME (O44081) Nucleolar protein AT band 60B (Minifly protein)
Length = 508
Score = 31.6 bits (70), Expect = 0.36
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 6 TEEEDSKKKKKRGRG-------GRRRTQPYHESKKKEKMRLKKRNRE 45
T +D KKKKK+ +G +P + KKK+K + K R+R+
Sbjct: 458 TPSKDKKKKKKKHKGDEEAPEAAEEEAEPVEKEKKKKKKKDKDRDRD 504
>ACIN_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in the
nucleus (Acinus)
Length = 1341
Score = 31.6 bits (70), Expect = 0.36
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
+RR E+E+ ++K++ R R + K++E R + R RE
Sbjct: 1250 KRRKEQEEEEQKEREKEAERERNRQLEREKRREHSRERDRERE 1292
Score = 29.3 bits (64), Expect = 1.8
Identities = 13/42 (30%), Positives = 26/42 (60%)
Query: 7 EEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLR 48
++E + ++ + R RR+ Q E K++EK ++RNR++ R
Sbjct: 1236 QKEAERAERAKEREKRRKEQEEEEQKEREKEAERERNRQLER 1277
>LA_MOUSE (P32067) Lupus La protein homolog (La ribonucleoprotein)
(La autoantigen homolog)
Length = 415
Score = 31.2 bits (69), Expect = 0.47
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 2 GRRRTEEEDSKKK--KKRGRGGRRRTQPYHESKKKE 35
GRR ++D +++ KRGR GR R +P + KK+E
Sbjct: 374 GRRTRFDDDDRRRGPMKRGRDGRDREEPASKHKKRE 409
>HSP2_MURBR (P83212) Sperm protamine P2
Length = 58
Score = 31.2 bits (69), Expect = 0.47
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 3 RRRTEEEDSKKK---KKRGRGGRRRTQPYHESKKKEKMRLKKRNR 44
RRR + K+K KKRG+G RR ++ + K K K R ++R R
Sbjct: 4 RRRGKGRGKKRKGKGKKRGKGRRRGSKGRKKKKGKGKKRKRRRRR 48
Score = 28.5 bits (62), Expect = 3.1
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 3 RRRTEEEDSKKKKKRGRG-----GRRRTQPYHESKKKEKMRLKKRNR 44
RRR + KK++G+G GRRR + +KK+K + KKR R
Sbjct: 1 RRRRRRGKGRGKKRKGKGKKRGKGRRRGS---KGRKKKKGKGKKRKR 44
>CHDM_DROME (O97159) Chromodomain helicase-DNA-binding protein
Mi-2 homolog (dMi-2)
Length = 1982
Score = 31.2 bits (69), Expect = 0.47
Identities = 16/45 (35%), Positives = 27/45 (59%), Gaps = 3/45 (6%)
Query: 7 EEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIE 51
+ EDS++KKK G +R+T+ E +K+K R K + E F++
Sbjct: 46 DPEDSRRKKK---GKKRKTRKGEEKGRKKKKRKKNESEEDSDFVQ 87
>YU20_ARATH (Q9ZPV5) Hypothetical UPF0120 protein At2g18220
Length = 779
Score = 30.8 bits (68), Expect = 0.62
Identities = 18/63 (28%), Positives = 35/63 (54%), Gaps = 10/63 (15%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQFLHSSSTNLQ 62
+ + EE+ KKKKR RGG+ +T+ KK+++ L + + +E F+ SS +
Sbjct: 678 KEKEPEEEKTKKKKRKRGGKSKTE-----KKQDEQGLGEDD-----VVEDFVLSSDEEEE 727
Query: 63 NIY 65
+++
Sbjct: 728 DLF 730
>MYO6_HUMAN (Q9UM54) Myosin VI
Length = 1285
Score = 30.8 bits (68), Expect = 0.62
Identities = 14/42 (33%), Positives = 24/42 (56%)
Query: 4 RRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
RR +EE K++K+R +RR + E + K +M K++ E
Sbjct: 927 RRIQEEMEKERKRREEDEKRRRKEEEERRMKLEMEAKRKQEE 968
>CYP1_BRUMA (Q27450) Peptidylprolyl isomerase 1 (EC 5.2.1.8)
(Peptidylprolyl cis-trans isomerase 1) (PPIase 1)
(Cyclophilin) (BmCYP-1)
Length = 843
Score = 30.8 bits (68), Expect = 0.62
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 4 RRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQFLHSSSTNLQN 63
+R E S++++ R G RRR+ + + + + R+R +R E + S +
Sbjct: 696 KRNERSRSRRRRSRSNGRRRRSSSRRSRSRDRRHKSRSRSRGYVRRFEGWSRSRRPTRRE 755
Query: 64 IY 65
+Y
Sbjct: 756 LY 757
>CVCA_PEA (P13915) Convicilin precursor
Length = 571
Score = 30.8 bits (68), Expect = 0.62
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 2 GRRRTE-EEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQFLHSSST 59
GR R E EED ++ ++ RG +RR P ++ + + KR+R R E+ SS +
Sbjct: 90 GRERWEREEDEEQVEEEWRGSQRREDPEERARLRHREERTKRDRRHQREGEEEERSSES 148
>Y5G8_ENCCU (Q8STA9) Hypothetical protein ECU05_1680/ECU11_0050
Length = 612
Score = 30.4 bits (67), Expect = 0.81
Identities = 13/42 (30%), Positives = 25/42 (58%)
Query: 4 RRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
++ EEE K+++KR +++ + E KKK+K K+ +E
Sbjct: 316 KKKEEEKKKEEEKRKEEKKKKKEEKKEEKKKKKEEKKEEKKE 357
Score = 30.0 bits (66), Expect = 1.1
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
+++ EE+ +KKKK+ + + E KK+EK KK ++
Sbjct: 334 KKKKEEKKEEKKKKKEEKKEEKKEEKKEEKKEEKKEEKKEEKK 376
Score = 28.5 bits (62), Expect = 3.1
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 5 RTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
+ +EE KKK+++ +++ + E KK+EK KK ++
Sbjct: 328 KRKEEKKKKKEEKKEEKKKKKEEKKEEKKEEKKEEKKEEKK 368
Score = 27.7 bits (60), Expect = 5.2
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 4 RRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
+R EE+ KK++K+ +++ + E K+++K K+ +E
Sbjct: 328 KRKEEKKKKKEEKKEEKKKKKEEKKEEKKEEKKEEKKEEKKE 369
Score = 27.7 bits (60), Expect = 5.2
Identities = 12/43 (27%), Positives = 24/43 (54%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
+++ EE+ ++KKK+ + + E KK+EK KK ++
Sbjct: 322 KKKEEEKRKEEKKKKKEEKKEEKKKKKEEKKEEKKEEKKEEKK 364
Score = 27.7 bits (60), Expect = 5.2
Identities = 12/43 (27%), Positives = 24/43 (54%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
R ++E+ KKK++ + + + + KK+EK KK+ +E
Sbjct: 307 REMEKKEEEKKKEEEKKKEEEKRKEEKKKKKEEKKEEKKKKKE 349
Score = 27.3 bits (59), Expect = 6.8
Identities = 12/45 (26%), Positives = 24/45 (52%)
Query: 1 MGRRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
M ++ E++ ++KKK + + E KK+EK + K+ +E
Sbjct: 309 MEKKEEEKKKEEEKKKEEEKRKEEKKKKKEEKKEEKKKKKEEKKE 353
Score = 27.3 bits (59), Expect = 6.8
Identities = 11/43 (25%), Positives = 25/43 (57%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
RR E+++ +KKK+ + + + KKKE+ + +K+ ++
Sbjct: 306 RREMEKKEEEKKKEEEKKKEEEKRKEEKKKKKEEKKEEKKKKK 348
Score = 26.9 bits (58), Expect = 8.9
Identities = 12/43 (27%), Positives = 24/43 (54%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
R+R E E +++KK+ ++ + E KKK+K K+ ++
Sbjct: 304 RQRREMEKKEEEKKKEEEKKKEEEKRKEEKKKKKEEKKEEKKK 346
>SFR4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4
(Pre-mRNA splicing factor SRP75) (SRP001LB)
Length = 494
Score = 30.4 bits (67), Expect = 0.81
Identities = 16/49 (32%), Positives = 29/49 (58%), Gaps = 1/49 (2%)
Query: 1 MGRRRTEEEDSKKKKKRGRG-GRRRTQPYHESKKKEKMRLKKRNREVLR 48
+ R R++E+ ++ + R R G R++ SK K+K + +KR+RE R
Sbjct: 317 VSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESR 365
Score = 27.7 bits (60), Expect = 5.2
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 2 GRRRTEEED-------SKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQ 52
GR+R+ EE SK ++ R RG +R ++ KKK++ + ++R R + +
Sbjct: 356 GRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSK 413
>NOP5_YEAST (Q12499) Nucleolar protein NOP58 (Nucleolar protein
NOP5)
Length = 511
Score = 30.4 bits (67), Expect = 0.81
Identities = 13/43 (30%), Positives = 25/43 (57%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
R+R ++EDSK KK + + + + + +KKEK K++ +
Sbjct: 459 RKRDDDEDSKDSKKAKKEKKDKKEKKEKKEKKEKKEKKEKKEK 501
Score = 26.9 bits (58), Expect = 8.9
Identities = 12/39 (30%), Positives = 25/39 (63%)
Query: 7 EEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
EE+ KK+KKR R ++ ++KK++K + +K+ ++
Sbjct: 449 EEKKEKKEKKRKRDDDEDSKDSKKAKKEKKDKKEKKEKK 487
>NDF1_RAT (Q64289) Neurogenic differentiation factor 1 (NeuroD1)
(Basic helix-loop-helix factor 1) (BHF-1)
Length = 357
Score = 30.4 bits (67), Expect = 0.81
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 7 EEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQFL---------HSS 57
EEED +K K+RG ++ T+ E K +M+ R R + + L +S
Sbjct: 74 EEEDDQKPKRRGPKKKKMTKARLERFKLRRMKANARERNRMHGLNAALDNLRKVVPCYSK 133
Query: 58 STNLQNI----YITTYPFKITQVMKKKVKPSLASGACTL 92
+ L I Y + ++++++ P L S TL
Sbjct: 134 TQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTL 172
>NDF1_MESAU (Q60430) Neurogenic differentiation factor 1 (NeuroD1)
(Beta-cell E-box trans-activator 2) (BETA2)
Length = 355
Score = 30.4 bits (67), Expect = 0.81
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 7 EEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQFL---------HSS 57
EEED +K K+RG ++ T+ E K +M+ R R + + L +S
Sbjct: 73 EEEDDQKPKRRGPKKKKMTKARLERFKLRRMKANARERNRMHGLNAALDNLRKVVPCYSK 132
Query: 58 STNLQNI----YITTYPFKITQVMKKKVKPSLASGACTL 92
+ L I Y + ++++++ P L S TL
Sbjct: 133 TQKLSKIETLRLAKNYIWALSEILRSGKSPDLVSFVQTL 171
>MNN4_YEAST (P36044) MNN4 protein
Length = 1178
Score = 30.4 bits (67), Expect = 0.81
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 3 RRRTEEEDSKKK----KKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
+++ EEE+ KKK KK+ ++ + E KKKE+ KK+ E
Sbjct: 1050 KKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKQEEE 1096
Score = 29.3 bits (64), Expect = 1.8
Identities = 14/43 (32%), Positives = 25/43 (57%), Gaps = 4/43 (9%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
+++ EEE+ KKK++ ++ + E KKKE+ KK+ E
Sbjct: 1042 KKKKEEEEKKKKEEE----EKKKKEEEEKKKKEEEEKKKKEEE 1080
Score = 28.9 bits (63), Expect = 2.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 3 RRRTEEEDSKKK----KKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
+++ EEE+ KKK KK+ G + E+KK E KK E
Sbjct: 1090 KKKQEEEEKKKKEEEEKKKQEEGEKMKNEDEENKKNEDEEKKKNEEE 1136
Score = 28.5 bits (62), Expect = 3.1
Identities = 11/43 (25%), Positives = 26/43 (59%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
RR ++++ ++KKK+ +++ + + KK+E+ + KK E
Sbjct: 1039 RREKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEE 1081
Score = 28.5 bits (62), Expect = 3.1
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 3 RRRTEEEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNREVLRFIEQFLHSS 57
+++ EEE+ KK++++ + E KKK++ KK+N E + ++ HS+
Sbjct: 1130 KKKNEEEEKKKQEEKNKKNE------DEEKKKQEEEEKKKNEEEEKKKQEEGHSN 1178
Score = 28.1 bits (61), Expect = 4.0
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 3 RRRTEEEDSKKKK---KRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
+++ EEE+ KKK+ K+ + + + E KKK++ KK+ E
Sbjct: 1058 KKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKQEEEEKKKKEE 1103
Score = 27.3 bits (59), Expect = 6.8
Identities = 12/38 (31%), Positives = 21/38 (54%)
Query: 8 EEDSKKKKKRGRGGRRRTQPYHESKKKEKMRLKKRNRE 45
EE +++KK+ ++ + E KKKE+ KK+ E
Sbjct: 1035 EERKRREKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEE 1072
Score = 27.3 bits (59), Expect = 6.8
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 4 RRTEEEDSKKK-----KKRGRGGRRRTQPYHESKKKEKMRLKKR 42
++ +EE+ KKK KK+ ++ Q E KKKE+ KK+
Sbjct: 1066 KKKKEEEEKKKKEEEEKKKKEEEEKKKQEEEEKKKKEEEEKKKQ 1109
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.315 0.129 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,331,667
Number of Sequences: 164201
Number of extensions: 362107
Number of successful extensions: 3787
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 3098
Number of HSP's gapped (non-prelim): 562
length of query: 96
length of database: 59,974,054
effective HSP length: 72
effective length of query: 24
effective length of database: 48,151,582
effective search space: 1155637968
effective search space used: 1155637968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0022.20