BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0022.15
         (313 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RPC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC...    35  0.18
CGB3_HUMAN (Q8WWL7) G2/mitotic-specific cyclin B3                      33  1.2
VCP_AEDAE (P42660) Vitellogenic carboxypeptidase precursor (EC 3...    32  1.6
WR48_ARATH (Q9FGZ4) Probable WRKY transcription factor 48 (WRKY ...    32  2.0
ERA_MYCPU (Q98QI1) GTP-binding protein era homolog                     31  4.5
YKZ9_YEAST (P36115) Hypothetical 68.9 kDa protein in YPT52-DBP7 ...    30  5.9
CH61_MAIZE (P29185) Chaperonin CPN60-1, mitochondrial precursor ...    30  7.8

>RPC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC
           2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta''
           subunit) (RNA polymerase beta'' subunit)
          Length = 1386

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 25/76 (32%), Positives = 39/76 (50%), Gaps = 6/76 (7%)

Query: 14  QSETQHSILTKVTRSSIYSEQLSEQRSSKKRR------KSSSPLLLLKLTGDGKMRENEN 67
           +S+  ++IL K+  S  Y+  L E    KK+       K+ +  L LK+  +G ++ NE 
Sbjct: 535 KSQLTNNILNKINNSKNYNFILQEYNIKKKKNFYFLKNKNLTCPLFLKIKKNGVLKNNEI 594

Query: 68  FAILIFPAPSSVNSKI 83
           FAIL  P+    NS I
Sbjct: 595 FAILDDPSYKVKNSGI 610


>CGB3_HUMAN (Q8WWL7) G2/mitotic-specific cyclin B3
          Length = 1395

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 13/116 (11%)

Query: 17  TQHSILTKVTRSSIYSEQLSEQRSSKKRRKSSSPLLLLKLTGDGKMRENENFAILIFPAP 76
           T+ ++LTK T  S+  +++++ + S  ++    PL+L K+T      E E+F   + P  
Sbjct: 576 TEETVLTK-TSLSLQEKKITQGKMSHLKK----PLVLQKITS-----EEESFYKKLLPFK 625

Query: 77  SSVNSKIGFGDRIP---KLKRGFLELSGCRKRKLPSEERLETSREMGVRVWNLHLK 129
               ++  F  + P   K K   L+     K  L  +E+  T  E    +++LH+K
Sbjct: 626 MKSTTEEKFLSQEPSALKEKHTTLQEVSLSKESLAIQEKATTEEEFSQELFSLHVK 681


>VCP_AEDAE (P42660) Vitellogenic carboxypeptidase precursor (EC
          3.4.16.-)
          Length = 471

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 20/55 (36%), Positives = 26/55 (46%)

Query: 31 YSEQLSEQRSSKKRRKSSSPLLLLKLTGDGKMRENENFAILIFPAPSSVNSKIGF 85
          Y + +    S  +  +S  PL L  L  DGK+ E  N A +  P  SSV S  GF
Sbjct: 26 YKKLMRGSASPPRPGESGEPLFLTPLLQDGKIEEARNKARVNHPMLSSVESYSGF 80


>WR48_ARATH (Q9FGZ4) Probable WRKY transcription factor 48 (WRKY
          DNA-binding protein 48)
          Length = 399

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 27/97 (27%), Positives = 36/97 (36%)

Query: 3  LRAKTTEFHHNQSETQHSILTKVTRSSIYSEQLSEQRSSKKRRKSSSPLLLLKLTGDGKM 62
          +  K  E HH+Q + Q     K T + I  EQ  EQ+    +  SSS +  L  + D   
Sbjct: 1  MEKKKEEDHHHQQQQQQQKEIKNTETKIEQEQEQEQKQEISQASSSSNMANLVTSSDHHP 60

Query: 63 RENENFAILIFPAPSSVNSKIGFGDRIPKLKRGFLEL 99
           E       IF   S       F D        FL+L
Sbjct: 61 LELAGNLSSIFDTSSLPFPYSYFEDHSSNNPNSFLDL 97


>ERA_MYCPU (Q98QI1) GTP-binding protein era homolog
          Length = 293

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 101 GCRKRKLPSEERLETSREMGVRVWNLHLKLRIEKVFINQEK 141
           G + +K+    R +  R++GV V  L LK++++K ++NQEK
Sbjct: 247 GSKIKKIGISARKKIQRKLGVNV-KLFLKIKVKKNWVNQEK 286


>YKZ9_YEAST (P36115) Hypothetical 68.9 kDa protein in YPT52-DBP7
           intergenic region
          Length = 615

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 19/71 (26%), Positives = 33/71 (45%), Gaps = 5/71 (7%)

Query: 15  SETQHSILTKVTRSSIYSEQLSEQRSSKKRRKS-----SSPLLLLKLTGDGKMRENENFA 69
           + +Q ++LT  +     S    E  ++K   K+      SP L   L G G++ ENEN +
Sbjct: 178 NRSQENLLTSFSSGRRLSSSSMEPATNKDSNKALPKRRPSPPLQSSLVGSGQLHENENLS 237

Query: 70  ILIFPAPSSVN 80
            +   +  S+N
Sbjct: 238 SISIDSRHSLN 248


>CH61_MAIZE (P29185) Chaperonin CPN60-1, mitochondrial precursor
           (HSP60-1)
          Length = 577

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 91  KLKRGFLE---LSGCRKRKLPSEERLETSREMGVRVWNLHLKLRIEKVFINQEKPLTGKL 147
           KL RG++    ++  + +K   E+ L    +   +V N+H  +++ ++ + ++KPL   L
Sbjct: 227 KLDRGYISPYFITNSKTQKCELEDPLILIHDK--KVTNMHAVVKVLEMALKKQKPL---L 281

Query: 148 VRAEDVQDEPL 158
           + AEDV+ E L
Sbjct: 282 IVAEDVESEAL 292


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.321    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,686,995
Number of Sequences: 164201
Number of extensions: 1483958
Number of successful extensions: 3329
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3326
Number of HSP's gapped (non-prelim): 8
length of query: 313
length of database: 59,974,054
effective HSP length: 110
effective length of query: 203
effective length of database: 41,911,944
effective search space: 8508124632
effective search space used: 8508124632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)