BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0020.10
(535 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YJIJ_ECOLI (P39381) Hypothetical protein yjiJ 37 0.13
ALA2_ARATH (P98205) Potential phospholipid-transporting ATPase 2... 35 0.37
RPOB_STRA5 (Q8E239) DNA-directed RNA polymerase beta chain (EC 2... 33 1.9
RPOB_STRA3 (Q8E7J8) DNA-directed RNA polymerase beta chain (EC 2... 33 1.9
KHT2_KLULA (P53387) Hexose transporter 2 33 1.9
YIHO_SALTY (Q9L7R4) Hypothetical symporter yihO 33 2.4
YCLF_BACSU (P94408) Hypothetical transporter yclF 33 2.4
YWFB_BACSU (P39638) Hypothetical protein ywfB 32 3.2
PP47_MYCTU (O53268) Hypothetical PPE-family protein PPE47/PPE48 32 3.2
PP46_MYCTU (P31500) Hypothetical PPE-family protein PPE46 32 3.2
UBA1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1 32 4.1
DALT_KLEPN (O52718) D-arabinitol transporter 32 4.1
COX1_CANGA (Q85QA3) Cytochrome c oxidase polypeptide I (EC 1.9.3.1) 32 4.1
COX1_BLAGE (Q36724) Cytochrome c oxidase polypeptide I (EC 1.9.3... 32 4.1
Y933_METJA (Q58343) Hypothetical protein MJ0933 31 7.1
RAG1_KLULA (P18631) Low-affinity glucose transporter (Hexose tra... 31 7.1
HXT2_YEAST (P23585) High-affinity glucose transporter HXT2 31 7.1
HXT1_YEAST (P32465) Low-affinity glucose transporter HXT1 31 7.1
COX1_YEAST (P00401) Cytochrome c oxidase polypeptide I (EC 1.9.3.1) 31 7.1
COX1_KLULA (P20386) Cytochrome c oxidase polypeptide I (EC 1.9.3.1) 31 7.1
>YJIJ_ECOLI (P39381) Hypothetical protein yjiJ
Length = 392
Score = 37.0 bits (84), Expect = 0.13
Identities = 40/174 (22%), Positives = 68/174 (38%), Gaps = 18/174 (10%)
Query: 131 NFSALEWTSIGWAIGLAIAAPILGFLSFHLDGHFPKFITVASTAVGVFFCLPAGFFK-VT 189
+FS L W + G G + + F +FH F+ ++ A G+ A +
Sbjct: 48 SFSQLSWIASGNYAGYLAGSLLFSFGAFHQPSRLRPFLLASALASGLLILAMAWLPPFIL 107
Query: 190 AIFIPYIAGIIAASTVATAA-----HTHHLGLMIRSFTGP--TLKRSQFPIRQGISSKLS 242
+ I +AG+ +A + + HT H ++ F+G + + G+ LS
Sbjct: 108 VLLIRVLAGVASAGMLIFGSTLIMQHTRHPFVLAALFSGVGIGIALGNEYVLAGLHFDLS 167
Query: 243 LHA--TAAGCLGSALISAFTYHMIRE--------LNVNEPDIMSLWIVSIFSGL 286
AG L ++ A T M + L E IMS W+++I GL
Sbjct: 168 SQTLWQGAGALSGMMLIALTLLMPSKKHAITPMPLAKTEQQIMSWWLLAILYGL 221
>ALA2_ARATH (P98205) Potential phospholipid-transporting ATPase 2 (EC
3.6.3.1) (Aminophospholipid flippase 2)
Length = 1107
Score = 35.4 bits (80), Expect = 0.37
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 245 ATAAGCLGSALISAFTYHMI--RELNVNEPDIMSLWIVSIFSGLIWLVGIFHVATAIGRT 302
+T AG G +L A +I + ++ L +V++ SG IWL A + +
Sbjct: 889 STFAGWFGRSLFHAIIVFVITIHAYAYEKSEMEELGMVAL-SGCIWLQ-----AFVVAQE 942
Query: 303 TDEISFSSRLHPFSVFKYPHAIGALASVFISSFITMTIFTGGVVFIVGQLCIKPVHLLFF 362
T+ F+V ++ G L + +F+ I + G+ I+ +LC +P +
Sbjct: 943 TNS---------FTVLQHLSIWGNLVGFYAINFLFSAIPSSGMYTIMFRLCSQP----SY 989
Query: 363 WLTYFLF------PVFSLSLLQPLLRVIKMN 387
W+T FL P+F+L + R K+N
Sbjct: 990 WITMFLIVGAGMGPIFALKYFRYTYRPSKIN 1020
>RPOB_STRA5 (Q8E239) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1191
Score = 33.1 bits (74), Expect = 1.9
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 109 GTHCSQKELHLYSKLTNQTITSNFSALEWTSIGWAIGLAIAAPILGFLSFHLDGHFPKFI 168
G + K+L+L ++L NQTI N E I G + ++ ++ H+DG KF+
Sbjct: 276 GRYKINKKLNLKTRLLNQTIAENLVDGETGEILVEAGTVMTRDVIDSIAEHIDGDLNKFV 335
>RPOB_STRA3 (Q8E7J8) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1191
Score = 33.1 bits (74), Expect = 1.9
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 109 GTHCSQKELHLYSKLTNQTITSNFSALEWTSIGWAIGLAIAAPILGFLSFHLDGHFPKFI 168
G + K+L+L ++L NQTI N E I G + ++ ++ H+DG KF+
Sbjct: 276 GRYKINKKLNLKTRLLNQTIAENLVDGETGEILVEAGTVMTRDVIDSIAEHIDGDLNKFV 335
>KHT2_KLULA (P53387) Hexose transporter 2
Length = 566
Score = 33.1 bits (74), Expect = 1.9
Identities = 24/90 (26%), Positives = 38/90 (41%), Gaps = 5/90 (5%)
Query: 415 KWGHLVVFSVIQSTGTGILHAFSRVLVLDCAPSGKEGAFSIWYAWMRSAGLLVGF--TVG 472
KW + +I G G + S +L+ + AP G +Y M + G+ +G+ G
Sbjct: 163 KWYQYFIGRIISGLGVGGISVLSPMLISETAPKHIRGTLVSFYQLMITFGIFLGYCTNYG 222
Query: 473 SVSPGNI---RTSFGAAFCTAIAGIVVLLF 499
+ + N R G F AI I +LF
Sbjct: 223 TKTYSNSVQWRVPLGLCFAWAIFMITGMLF 252
>YIHO_SALTY (Q9L7R4) Hypothetical symporter yihO
Length = 473
Score = 32.7 bits (73), Expect = 2.4
Identities = 79/365 (21%), Positives = 135/365 (36%), Gaps = 53/365 (14%)
Query: 155 FLSFHLDGHFPKFITVASTAVGVFFCLPAGFFKVTAIFIPYIAGIIAASTVATAAHTHHL 214
F F L FP + + F LP T +F+ + G+ + +
Sbjct: 86 FRPFILYASFPVALVATAQFFATHFTLPVKTAFATVLFMLF--GLFYSLMNCS------Y 137
Query: 215 GLMIRSFTGPTLKRSQFPI-RQGISSKLSLHATAAGCLGSALISAFTYHMIRELNVNEPD 273
G M+ + T +R+Q RQG G L+ + I+ L P
Sbjct: 138 GAMVPAITKNPHERAQLAAWRQG------------GATIGLLLCTVGFMPIQALFTRSPS 185
Query: 274 IMSLWIVSIFS--GLIWLVGIFH-VATAIGRTTDEISFSSRLHPF-SVFKYPHAIGALAS 329
+ L IFS GL + F V T + S L F ++F+ P L
Sbjct: 186 LGYLIAAVIFSVCGLFSMWWCFSGVKERYIETVPDTHKPSILKSFCAIFRNP----PLLV 241
Query: 330 VFISSFITMTIFTGGVVFIV--GQLCIKPVHLLFFWLTYFLFPVFSLSLLQPLLRVIKMN 387
+ +++ T+ F + V Q + +HLL W+ +F + +L V +
Sbjct: 242 LCVANLCTLAAFNIKLAIQVYYTQYVLNDIHLLS-WMGFFSMGCILIGVLLVPAAVKRFG 300
Query: 388 SVKMQIVGFLFSLISSGFGFYYGHSHWKWGHLVVFSVIQSTGTGILHAFSRVLVLDCAPS 447
++ + G + + F +G + + + V+FS I GT +++ + LV D
Sbjct: 301 KKQVYLGGLILWAVGDILNFIWGGTSFLF---VIFSCIAFFGTAFVNSLNWALVPDTVDY 357
Query: 448 GK-------EGAFSIWYAWMRS-AGLLVGFTVGSVSPGNIRTSFG-----AAFCTAIAGI 494
G+ EG+ Y + R + L GF PG + T G A T + G+
Sbjct: 358 GEWKTGIRAEGSVYTGYTFSRKISAALAGFL-----PGIMLTQIGYIPNIAQSDTTLLGL 412
Query: 495 VVLLF 499
L+F
Sbjct: 413 RQLIF 417
>YCLF_BACSU (P94408) Hypothetical transporter yclF
Length = 492
Score = 32.7 bits (73), Expect = 2.4
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 408 YYGHSHWKWGHLV-----------VFSVIQSTGTGILHAFSRVLVLDCAPSG---KEGAF 453
+YG +GH+ + V+ GTG+L +V D ++ F
Sbjct: 99 FYGGIFIMFGHIALAYPGSSIAFYISMVLIIVGTGLLKPNVSSVVGDLYTKEDPRRDSGF 158
Query: 454 SIWYAWMRSAGLLVGFTVGSVSPG-NIRTSFGAAFCTAIAGIVVLLFGNISDVGGAVAAG 512
SI+Y + GLL VG++ N FGAA + G++V ++G +A
Sbjct: 159 SIFYMGINLGGLLAPLIVGTLGQKYNYHLGFGAAAVGMLLGLIVFPLTRKKNLG--LAGS 216
Query: 513 HVRDDSERSSAV 524
+V + + SA+
Sbjct: 217 NVPNPLSKKSAI 228
>YWFB_BACSU (P39638) Hypothetical protein ywfB
Length = 204
Score = 32.3 bits (72), Expect = 3.2
Identities = 15/36 (41%), Positives = 21/36 (57%)
Query: 229 SQFPIRQGISSKLSLHATAAGCLGSALISAFTYHMI 264
S F + QG++SKLSLH T C+ L S Y ++
Sbjct: 42 SNFTLLQGLNSKLSLHDTFESCIERTLQSPLEYTIV 77
>PP47_MYCTU (O53268) Hypothetical PPE-family protein PPE47/PPE48
Length = 435
Score = 32.3 bits (72), Expect = 3.2
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 29/168 (17%)
Query: 134 ALEWTSIGWAIGLAIAAPILGFLSFHLDGHFPKFITVASTAVGVFFCLPAGFFKVTAIFI 193
+L+ + GW+ A A + LS + VA+ GV+ A F A ++
Sbjct: 26 SLQAAAAGWSALSAEYAAVAQELS----------VVVAAVGAGVWQGPSAELF--VAAYV 73
Query: 194 PYIAGIIAASTVATAAHTHHLGLMIRSFTGPTLKRSQFPIRQGISSKLSLHATAAGCLGS 253
PY+A ++ AS + AA H + G ++ P +L AA L
Sbjct: 74 PYVAWLVQASADSAAAAGEHEA----AAAGYVCALAEMP---------TLPELAANHLTH 120
Query: 254 ALISAFTYHMIRELNV--NEPDIMSLWI--VSIFSGLIWLVGIFHVAT 297
A++ A + I + + NE D + +W+ ++ S +VG VAT
Sbjct: 121 AVLVATNFFGINTIPIALNEADYVRMWVQAATVMSAYEAVVGAALVAT 168
>PP46_MYCTU (P31500) Hypothetical PPE-family protein PPE46
Length = 434
Score = 32.3 bits (72), Expect = 3.2
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 29/168 (17%)
Query: 134 ALEWTSIGWAIGLAIAAPILGFLSFHLDGHFPKFITVASTAVGVFFCLPAGFFKVTAIFI 193
+L+ + GW+ A A + LS + VA+ GV+ A F A ++
Sbjct: 26 SLQAAAAGWSALSAEYAAVAQELS----------VVVAAVGAGVWQGPSAELF--VAAYV 73
Query: 194 PYIAGIIAASTVATAAHTHHLGLMIRSFTGPTLKRSQFPIRQGISSKLSLHATAAGCLGS 253
PY+A ++ AS + AA H + G ++ P +L AA L
Sbjct: 74 PYVAWLVQASADSAAAAGEHEA----AAAGYVCALAEMP---------TLPELAANHLTH 120
Query: 254 ALISAFTYHMIRELNV--NEPDIMSLWI--VSIFSGLIWLVGIFHVAT 297
A++ A + I + + NE D + +W+ ++ S +VG VAT
Sbjct: 121 AVLVATNFFGINTIPIALNEADYVRMWVQAATVMSAYEAVVGAALVAT 168
>UBA1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1
Length = 1058
Score = 32.0 bits (71), Expect = 4.1
Identities = 26/86 (30%), Positives = 38/86 (43%), Gaps = 17/86 (19%)
Query: 57 GEKPSRFEVMGWYLYEFCS------YFIQTVLIPVVFPLIISQLQNLPA----------D 100
G +P +V+G Y + C Y ++ V P IS ++LPA D
Sbjct: 261 GCQPMEIKVLGPYTFSICDTSNFSDYIRGGIVSQVKVPKKIS-FKSLPASLVEPDFVMTD 319
Query: 101 WAKNNRPAGTHCSQKELHLYSKLTNQ 126
+AK +RPA H + LH + L NQ
Sbjct: 320 FAKYSRPAQLHIGFQALHQFCALHNQ 345
>DALT_KLEPN (O52718) D-arabinitol transporter
Length = 425
Score = 32.0 bits (71), Expect = 4.1
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 7/126 (5%)
Query: 289 LVGIFHVATAIGRTTDEISFSSRLHPFSVFKYPHAIGALASVFISSFITMTIFTGGVVFI 348
L + H A+G + E SF+ L+ + G +A + M F VF
Sbjct: 33 LAFLSHYIKALGFSPAEASFAFTLYGLAAALSAWISGVVAEIITPLKTMMIGFVLWCVFH 92
Query: 349 VGQLCIKPVH------LLFFWLTYFLFPVFSLSLLQPLLRVIKMNSVKMQIVGFLFSLIS 402
V L H LLF+ + F +P+F S + ++ +K ++ +G+ +++ S
Sbjct: 93 VLFLVFGLGHANYALILLFYGIRGFAYPLFLYSFIVAIVHNVKSDNAS-SAIGWFWAVYS 151
Query: 403 SGFGFY 408
G G +
Sbjct: 152 IGIGVF 157
>COX1_CANGA (Q85QA3) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Length = 534
Score = 32.0 bits (71), Expect = 4.1
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 12/150 (8%)
Query: 329 SVFISSFITMTIFTGGVVFIVGQLCIKPVHLLFFWLTYFLFPVFSLSLLQPLLRVIKMNS 388
++F +++ G + FIV L ++ + L F++ +F + L L +
Sbjct: 147 AIFALHLTSISSLLGSINFIVTTLNMRTNGMTMHKLPLFVWAIFITAFLLLLSLPVLSAG 206
Query: 389 VKMQIVG-----FLFSLISSGFGFYYGHSHWKWGHLVVFSVIQSTGTGILHAFSRVLVLD 443
V M ++ F + G Y H W +GH V+ +I G GI+ +V
Sbjct: 207 VTMLLLDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILI-IPGFGIISH----IVST 261
Query: 444 CAPSGKEGAFSIWYAWMRSAGLLVGFTVGS 473
+ G S+ YA M S GLL GF V S
Sbjct: 262 YSKKPVFGEISMVYA-MASIGLL-GFLVWS 289
>COX1_BLAGE (Q36724) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
(Fragment)
Length = 508
Score = 32.0 bits (71), Expect = 4.1
Identities = 39/151 (25%), Positives = 61/151 (39%), Gaps = 17/151 (11%)
Query: 329 SVFISSFITMTIFTGGVVFIVGQLCIKPVHL------LFFWLTYFLFPVFSLSLLQPLLR 382
++F ++ G V FI + +KP+++ LF W + LSL P+L
Sbjct: 141 AIFSLHLAGVSSILGAVNFISTIINMKPINMSPERIPLFVWSVGITALLLLLSL--PVLA 198
Query: 383 -VIKMNSVKMQIVGFLFSLISSGFGFYYGHSHWKWGHLVVFSVIQSTGTGILHAFSRVLV 441
I M + F G Y H W +GH V+ + IL F +
Sbjct: 199 GAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYIL-------ILPGFGMISH 251
Query: 442 LDCAPSGKEGAF-SIWYAWMRSAGLLVGFTV 471
+ C SGK+ AF ++ + A L+GF V
Sbjct: 252 IICHESGKKEAFGNLGMIFAMLAIGLLGFVV 282
>Y933_METJA (Q58343) Hypothetical protein MJ0933
Length = 238
Score = 31.2 bits (69), Expect = 7.1
Identities = 26/90 (28%), Positives = 41/90 (44%), Gaps = 11/90 (12%)
Query: 186 FKVTAIF------IPYIAGIIAASTVATAAHTHHLGLMIRSFTGPTLKRSQFPIRQGISS 239
F + AIF I YI+ I AA++ T L I S P L + + +G
Sbjct: 102 FAILAIFGFNWALIGYISSIAAATS-----DTFSSELGILSNEKPRLITTFEVVEKGTDG 156
Query: 240 KLSLHATAAGCLGSALISAFTYHMIRELNV 269
+++ T AG LG+ LI F Y + ++ +
Sbjct: 157 AITIFGTLAGVLGAFLIGLFGYLLFGDIKI 186
>RAG1_KLULA (P18631) Low-affinity glucose transporter (Hexose
transporter 1)
Length = 567
Score = 31.2 bits (69), Expect = 7.1
Identities = 22/90 (24%), Positives = 38/90 (41%), Gaps = 5/90 (5%)
Query: 415 KWGHLVVFSVIQSTGTGILHAFSRVLVLDCAPSGKEGAFSIWYAWMRSAGLLVGF--TVG 472
KW + +I G G + S +L+ + AP G Y M + G+ +G+ G
Sbjct: 164 KWYQYFIGRIISGLGVGGITVLSPMLISETAPKHLRGTLVSCYQLMITFGIFLGYCTNYG 223
Query: 473 SVSPGNI---RTSFGAAFCTAIAGIVVLLF 499
+ + N R G F AI ++ ++F
Sbjct: 224 TKNYSNSVQWRVPLGLCFAWAIFMVLGMMF 253
>HXT2_YEAST (P23585) High-affinity glucose transporter HXT2
Length = 541
Score = 31.2 bits (69), Expect = 7.1
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 382 RVIKMNSVKMQIVGFLFSLISSGFGFYYGHSHWKWGHLVVFSVIQSTGTGILHAFSRVLV 441
R+ M V + IVG + + SS KW + +I G G + S L+
Sbjct: 134 RIGLMCVVLVYIVGIVIQIASSD----------KWYQYFIGRIISGMGVGGIAVLSPTLI 183
Query: 442 LDCAPSGKEGAFSIWYAWMRSAGLLVGF 469
+ AP G +Y M + G+ +G+
Sbjct: 184 SETAPKHIRGTCVSFYQLMITLGIFLGY 211
>HXT1_YEAST (P32465) Low-affinity glucose transporter HXT1
Length = 570
Score = 31.2 bits (69), Expect = 7.1
Identities = 23/90 (25%), Positives = 38/90 (41%), Gaps = 5/90 (5%)
Query: 415 KWGHLVVFSVIQSTGTGILHAFSRVLVLDCAPSGKEGAFSIWYAWMRSAGLLVGF--TVG 472
KW + +I G G + S +L+ + APS G Y M + G+ +G+ G
Sbjct: 166 KWYQYFIGRIISGLGVGGITVLSPMLISEVAPSEMRGTLVSCYQVMITLGIFLGYCTNFG 225
Query: 473 SVSPGNI---RTSFGAAFCTAIAGIVVLLF 499
+ + N R G F A+ I ++F
Sbjct: 226 TKNYSNSVQWRVPLGLCFAWALFMIGGMMF 255
>COX1_YEAST (P00401) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Length = 534
Score = 31.2 bits (69), Expect = 7.1
Identities = 53/204 (25%), Positives = 82/204 (39%), Gaps = 20/204 (9%)
Query: 275 MSLWIVSIFSGLIWLVGIFHVATAIGRTTDEISFSSRLHPFSVFKYPHAIGALASVFISS 334
++ W++ + GL+ LV V + G S + S AI AL ISS
Sbjct: 101 IAFWVLPM--GLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISS 158
Query: 335 FITMTIFTGGVVFIVGQLCIKPVHLLFFWLTYFLFPVFSLSLLQPLLRVIKMNSVKMQIV 394
+ G + FIV L ++ + L F++ +F + L L + + M ++
Sbjct: 159 LL------GAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLL 212
Query: 395 G-----FLFSLISSGFGFYYGHSHWKWGHLVVFSVIQSTGTGILHAFSRVLVLDCAPSGK 449
F + G Y H W +GH V+ +I G GI+ +V +
Sbjct: 213 DRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILI-IPGFGIISH----VVSTYSKKPV 267
Query: 450 EGAFSIWYAWMRSAGLLVGFTVGS 473
G S+ YA M S GLL GF V S
Sbjct: 268 FGEISMVYA-MASIGLL-GFLVWS 289
>COX1_KLULA (P20386) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Length = 534
Score = 31.2 bits (69), Expect = 7.1
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 12/150 (8%)
Query: 329 SVFISSFITMTIFTGGVVFIVGQLCIKPVHLLFFWLTYFLFPVFSLSLLQPLLRVIKMNS 388
++F +++ G + FIV L ++ + L F++ +F + L L +
Sbjct: 147 AIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHRLPLFVWSIFITAFLLLLSLPVLSAG 206
Query: 389 VKMQIVG-----FLFSLISSGFGFYYGHSHWKWGHLVVFSVIQSTGTGILHAFSRVLVLD 443
V M ++ F + G Y H W +GH V+ +I G GI+ +V
Sbjct: 207 VTMLLLDRNFNTSFFEVAGGGDPVLYQHLFWFFGHPEVYILI-IPGFGIISH----IVST 261
Query: 444 CAPSGKEGAFSIWYAWMRSAGLLVGFTVGS 473
+ G S+ YA M S GLL GF V S
Sbjct: 262 YSKKPVFGEVSMVYA-MASIGLL-GFLVWS 289
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.326 0.140 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,270,440
Number of Sequences: 164201
Number of extensions: 2622524
Number of successful extensions: 9315
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 9301
Number of HSP's gapped (non-prelim): 33
length of query: 535
length of database: 59,974,054
effective HSP length: 115
effective length of query: 420
effective length of database: 41,090,939
effective search space: 17258194380
effective search space used: 17258194380
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0020.10