BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0019b.10
(251 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor 37 0.045
E78A_DROME (P45447) Ecdysone-induced protein 78C (DR-78) 35 0.13
DAN4_YEAST (P47179) Cell wall protein DAN4 precursor 35 0.22
Z236_HUMAN (Q9UL36) Zinc finger protein 236 34 0.29
MCDL_RAT (Q9JIK1) Mucin and cadherin-like protein precursor (Mu-... 34 0.29
TIR3_YEAST (P40552) Cell wall protein TIR3 precursor 33 0.50
HMAB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdo... 33 0.65
DPOL_THELI (P30317) DNA polymerase (EC 2.7.7.7) (Vent DNA polyme... 33 0.65
YO35_PHOPR (Q6LPF8) Hypothetical UPF0283 protein PBPRA2435 32 1.1
ANGT_MOUSE (P11859) Angiotensinogen precursor [Contains: Angiote... 32 1.1
PVDA_PLAKN (P22545) Duffy receptor, alpha form precursor (Erythr... 32 1.4
YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein P... 32 1.9
TSA1_MOUSE (Q9D9T6) Testis spermatocyte apoptosis-related gene 1... 32 1.9
TRA1_CAEBR (Q17308) Sex-determining transformer protein 1 32 1.9
MU5A_HUMAN (P98088) Mucin 5AC (Mucin 5 subtype AC, tracheobronch... 32 1.9
DDF2_MOUSE (Q7SIG6) Development and differentiation-enhancing fa... 31 2.5
VLPC_MYCHR (P29230) Variant surface antigen C precursor (VLPC pr... 31 3.2
VL96_IRV1 (P22856) L96 protein 31 3.2
TP2A_CHICK (O42130) DNA topoisomerase II, alpha isozyme (EC 5.99... 31 3.2
SRC2_MOUSE (P59222) Scavenger receptor class F member 2 precurso... 31 3.2
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor
Length = 374
Score = 37.0 bits (84), Expect = 0.045
Identities = 42/192 (21%), Positives = 75/192 (38%), Gaps = 7/192 (3%)
Query: 56 IDSGYTSEEIEGWKNNLIVEGILFNENQIFDNYVQNQGTRYAVTGYSFNAQDLIQKSNNY 115
+D Y I G +N+ I N+ + + T L+ + Y
Sbjct: 53 LDPAYCYNNICGGSDNIAFVAIRNNQCYCGSTLTATEVSSSLCTTPCPGYGSLMCGGDLY 112
Query: 116 WPFYSLNLDPRILTQTNGIGACLPFLTSQQNRLSGFATTSATSPTSELREITNVFVRTSP 175
W Y L + + T + +S + S +TT+ TSP+S ++ +S
Sbjct: 113 WSVY-LTGNGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSS----SSS 167
Query: 176 HQIIRQRASPSATVRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKK--SSNTNSSKK 233
+S S++ ++SS +SS + S +S P+T + SS+++SS
Sbjct: 168 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSS 227
Query: 234 SSQRGRPKGSKN 245
SS RP S +
Sbjct: 228 SSSSSRPSSSSS 239
>E78A_DROME (P45447) Ecdysone-induced protein 78C (DR-78)
Length = 866
Score = 35.4 bits (80), Expect = 0.13
Identities = 31/122 (25%), Positives = 49/122 (39%), Gaps = 7/122 (5%)
Query: 129 TQTNGIGACLPFLTSQQNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSAT 188
T +NG GA + Q + TS++SP+S +SP +S ++
Sbjct: 214 TLSNGGGALYTISSVHQFGPASNHNTSSSSPSSSA-------AHSSPDSGCSSASSSGSS 266
Query: 189 VRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRGRPKGSKNKPQ 248
SS +SS T S G ++ V PA SS + +K+ Q+ P + Q
Sbjct: 267 RSCGSSSASSSSSAVSSTISSGRSSNNSVVNPAATSSSVAHLNKEQQQQPLPTTQLQQQQ 326
Query: 249 PH 250
H
Sbjct: 327 QH 328
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor
Length = 1161
Score = 34.7 bits (78), Expect = 0.22
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 11/123 (8%)
Query: 117 PFYSLNLDPRILT--QTNGIGACLPFLTSQQNRLSGFATTSATSPTSELREITNVFVRTS 174
P+YS L P I + +GI +P TS S +TT T+ IT+ TS
Sbjct: 98 PWYSTRLKPAISSALSKDGIYTAIPTSTSTTTTKSSTSTTPTTT-------ITSTTSTTS 150
Query: 175 PHQIIRQRASPSATVRNASSPETSSQQCFPL--TCSPGHVASVEPVTPAVKKSSNTNSSK 232
++ T +++P TS+ P T S S TP +S T ++
Sbjct: 151 TTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTS 210
Query: 233 KSS 235
+S
Sbjct: 211 TTS 213
Score = 31.2 bits (69), Expect = 2.5
Identities = 23/110 (20%), Positives = 46/110 (40%), Gaps = 6/110 (5%)
Query: 128 LTQTNGIGACLPFLTSQQNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSA 187
+T T + P T+ + +T++T+PT+ T TS ++
Sbjct: 142 ITSTTSTTSTTP--TTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPT 199
Query: 188 TVRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQR 237
T +++P TS+ P T + S P T +S T+++ ++S +
Sbjct: 200 TSTTSTTPTTSTTSTTPTTST----TSTTPTTSTTPTTSTTSTTSQTSTK 245
Score = 30.8 bits (68), Expect = 3.2
Identities = 19/94 (20%), Positives = 41/94 (43%)
Query: 142 TSQQNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQ 201
T+ + +T+ T+ T+ T+ +TS +S S T +++P TS+
Sbjct: 211 TTSTTPTTSTTSTTPTTSTTPTTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTTPTTSTTS 270
Query: 202 CFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSS 235
P T + ++ ++ A S+ +++ SS
Sbjct: 271 TAPTTSTTSTTSTTSTISTAPTTSTTSSTFSTSS 304
>Z236_HUMAN (Q9UL36) Zinc finger protein 236
Length = 1845
Score = 34.3 bits (77), Expect = 0.29
Identities = 30/118 (25%), Positives = 51/118 (42%), Gaps = 8/118 (6%)
Query: 117 PFYSLNLDPRILTQTNGIG------ACLPFLTSQQNRLSGFATTSA-TSPTSELREITNV 169
P L+L P + + IG + L +S L+ T+ SP+ EIT
Sbjct: 1437 PISGLSLQPTVTSANLTIGPLSEQDSVLTTNSSGTQDLTQVMTSQGLVSPSGGPHEITLT 1496
Query: 170 FVRTSPHQIIRQRASPSATVRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSN 227
+S Q++ Q A P+AT ++ SP+ + L + G + S P +P+ + N
Sbjct: 1497 INNSSLSQVLAQAAGPTAT-SSSGSPQEITLTISELNTTSGSLPSTTPTSPSAISTQN 1553
>MCDL_RAT (Q9JIK1) Mucin and cadherin-like protein precursor
(Mu-protocadherin) (GP100)
Length = 862
Score = 34.3 bits (77), Expect = 0.29
Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 20/119 (16%)
Query: 142 TSQQNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQ 201
TS Q G T P + + TS Q A+PS + P TS
Sbjct: 533 TSPQTATPGGDATQTPKPGTSQPMVPTPGASTSS-----QPATPSGSSTQTPKPGTSQ-- 585
Query: 202 CFPLTCSPGHVASVEPVTPAVKKSSN-----------TNSSKKSSQRGRPKGSKNKPQP 249
P+ +PG S +P TP+ + T + SSQ P GS P+P
Sbjct: 586 --PMVPTPGASTSSQPATPSGSSTQTPRPGTSQPMVPTPGASTSSQPATPSGSTQTPKP 642
>TIR3_YEAST (P40552) Cell wall protein TIR3 precursor
Length = 269
Score = 33.5 bits (75), Expect = 0.50
Identities = 32/130 (24%), Positives = 54/130 (40%), Gaps = 12/130 (9%)
Query: 117 PFYSLNLDPRILTQTNGIGACLPFLTSQQNRLSGFATTSATSPTSELREITNVFVRTSPH 176
P+YS L+P I+ G + L Q SG + +A+S S E ++
Sbjct: 97 PWYSSRLEPEIIAALQSAGISITSL-GQTVSESGSESATASSDASSASESSSA------- 148
Query: 177 QIIRQRASPSATVRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQ 236
AS S++ ++S+ E+SS + S A+ + A K SS+ SS S+
Sbjct: 149 --ASSSASESSSAASSSASESSS--AASSSASESSSAASSSASEAAKSSSSAKSSGSSAA 204
Query: 237 RGRPKGSKNK 246
+ +K
Sbjct: 205 SSAASSASSK 214
>HMAB_DROME (P09087) Homeobox protein abdominal-B (P3)
(Infraabdominal 7) (IAB-7) (PH189)
Length = 493
Score = 33.1 bits (74), Expect = 0.65
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 144 QQNRLSGFATTSATSPTSELREITNVFVR-----TSPH-QIIRQRASPSATVRNASSPET 197
QQ + ATT S + T + TSPH Q + Q+ +P++ ASS
Sbjct: 126 QQQQQQQLATTPVAGALSPAQTPTGPSAQQQQHLTSPHHQQLPQQQTPNSVASGASSNLQ 185
Query: 198 SSQQCFPLTCSPGHVASVEPVTPAVKKSS 226
QQ +PG V P T +V SS
Sbjct: 186 QQQQQQNAAVAPGQTQIVAPTTASVSPSS 214
>DPOL_THELI (P30317) DNA polymerase (EC 2.7.7.7) (Vent DNA
polymerase) [Contains: Endonuclease PI-TliII (EC
3.1.-.-) (Tli pol-1 intein) (IVPS2); Endonuclease
PI-TliI (EC 3.1.-.-) (Tli pol-2 intein) (IVPS1)]
Length = 1702
Score = 33.1 bits (74), Expect = 0.65
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 2 RLIGMAYWKVSRFVASQRRTGCWLLLAWCYRRGKIQTLKAINSGEEQKEQLQVLIDSGYT 61
+LIG + W VSR +S W LL Y R ++ K EE K +L+ GY
Sbjct: 337 KLIGQSVWDVSR--SSTGNLVEWYLLRVAYARNELAPNKP--DEEEYKRRLRTTYLGGYV 392
Query: 62 SEEIEGWKNNLI 73
E +G N+I
Sbjct: 393 KEPEKGLWENII 404
>YO35_PHOPR (Q6LPF8) Hypothetical UPF0283 protein PBPRA2435
Length = 348
Score = 32.3 bits (72), Expect = 1.1
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 6 MAYWKVSRFVASQRRTGCWLLLAWCYRRGKIQT------------LKAINSGEEQKEQLQ 53
M W+ +V S +TG WL L W I T L+ + + ++EQ Q
Sbjct: 79 MTGWQTVDYVVSAYQTGDWLALGWSVIVAGIATMGITALGRELFKLRRLKQRQTEREQAQ 138
Query: 54 VLIDS 58
VL+D+
Sbjct: 139 VLLDA 143
>ANGT_MOUSE (P11859) Angiotensinogen precursor [Contains:
Angiotensin I (Ang I); Angiotensin II (Ang II);
Angiotensin III (Ang III) (Des-Asp[1]-angiotensin II)]
Length = 477
Score = 32.3 bits (72), Expect = 1.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 65 IEGWKNNLIVEGILFNENQIFDNYVQNQGT 94
+ GWK NL +EG+ + +F+ YV QGT
Sbjct: 249 VTGWKMNLPLEGVSTDSTLLFNTYVHFQGT 278
>PVDA_PLAKN (P22545) Duffy receptor, alpha form precursor
(Erythrocyte binding protein)
Length = 1073
Score = 32.0 bits (71), Expect = 1.4
Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 20/146 (13%)
Query: 109 IQKSNNYWPFYSLNLDPRILTQTNGIGACLPFLTSQQNRLSGFATTSATSPTSELREITN 168
I + W S TQ G + L+GF + + E+ + N
Sbjct: 440 ITRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFEN---EINKRDN 496
Query: 169 VFVRTSPHQIIRQRASPSATVRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSS-- 226
++ P + R + V+N S S AS P+T AVK SS
Sbjct: 497 LYNHLCPCVVEEARKNTQENVKNVGSGVESK------------AASSNPITEAVKSSSGE 544
Query: 227 ---NTNSSKKSSQRGRPKGSKNKPQP 249
+S+ KS +G K S N+ P
Sbjct: 545 GKVQEDSAHKSVNKGEGKSSTNEADP 570
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein
PB15E9.01c in chromosome I precursor
Length = 943
Score = 31.6 bits (70), Expect = 1.9
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 138 LPFLTSQQNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPET 197
LP T LS +T+ATS +S N TS ++P ++V +A+S
Sbjct: 282 LPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSAS------STPLSSVSSANSTTA 335
Query: 198 SSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSS 235
+S PL+ A+ TP +S T +S S+
Sbjct: 336 TSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASST 373
Score = 29.3 bits (64), Expect = 9.4
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 138 LPFLTSQQNRLSGFATTSATS----PTSELREITNVFVRTSPHQIIRQRASPSAT---VR 190
LP + LS +T+ATS P S + T ++P + + SA+ +
Sbjct: 415 LPTSSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLT 474
Query: 191 NASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSS 235
+ +S +S PLT A+ TP +S T++S S+
Sbjct: 475 SVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSST 519
>TSA1_MOUSE (Q9D9T6) Testis spermatocyte apoptosis-related gene 1
protein (Testis and spermatogenesis cell related protein
1) (mTSARG1)
Length = 193
Score = 31.6 bits (70), Expect = 1.9
Identities = 22/74 (29%), Positives = 35/74 (46%), Gaps = 3/74 (4%)
Query: 179 IRQRASPSATVRNASSPETSSQQCF-PLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQR 237
++++ S S RN+ SP+TSS P + +P + EP +P K S+
Sbjct: 4 VKKKKSDSRRRRNSISPQTSSDSSQQPSSETPP--SCPEPASPPSKPQPCQESTTPHQVN 61
Query: 238 GRPKGSKNKPQPHP 251
PK ++ PQP P
Sbjct: 62 PEPKPQQHTPQPLP 75
>TRA1_CAEBR (Q17308) Sex-determining transformer protein 1
Length = 1165
Score = 31.6 bits (70), Expect = 1.9
Identities = 20/91 (21%), Positives = 38/91 (40%), Gaps = 15/91 (16%)
Query: 176 HQIIRQRASPSATVRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKS- 234
+ ++ + A P TV +S P +S + + + +V PV P VK ++ T + +
Sbjct: 118 NSLVPEAAQPLQTVAESSEPTAASAEPTDASSAESSTITVTPVVPVVKFTNQTTPNGSTV 177
Query: 235 --------------SQRGRPKGSKNKPQPHP 251
+ GRP G+ +P +P
Sbjct: 178 ATSVGQNVRLTINGKRVGRPPGTFKRPPNNP 208
>MU5A_HUMAN (P98088) Mucin 5AC (Mucin 5 subtype AC,
tracheobronchial) (Tracheobronchial mucin) (TBM) (Major
airway glycoprotein) (Fragment)
Length = 1233
Score = 31.6 bits (70), Expect = 1.9
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Query: 154 TSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQCFPLTCSPGHVA 213
T++T+ S I+ + T+ I + P T + T+S T PG
Sbjct: 1 TTSTTSASTTSTISPLTTSTTSAPITSMPSGPGTTPSPVPTTSTTSAPTTSTTSGPGTTP 60
Query: 214 SVEPVTPAVKKSSNTNSSKKSSQRGRPKGSKNKPQPHP 251
S P T S+ T S+ +S G P P P
Sbjct: 61 SPVPTTSTT--SAPTTSTTSASTASTTSGPGTTPSPVP 96
Score = 29.3 bits (64), Expect = 9.4
Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 6/103 (5%)
Query: 149 SGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETS--SQQCFPLT 206
SG TT + PT+ + P SP T S+P TS S T
Sbjct: 30 SGPGTTPSPVPTTSTTSAPTTSTTSGPGTT----PSPVPTTSTTSAPTTSTTSASTASTT 85
Query: 207 CSPGHVASVEPVTPAVKKSSNTNSSKKSSQRGRPKGSKNKPQP 249
PG S P T + + +S ++ G+ P P
Sbjct: 86 SGPGTTPSPVPTTSTTSAPTTSTTSASTASTTSGPGTSLSPVP 128
>DDF2_MOUSE (Q7SIG6) Development and differentiation-enhancing
factor 2 (Pyk2 C-terminus associated protein) (PAP)
(Paxillin-associated protein with ARFGAP activity 3)
(PAG3)
Length = 784
Score = 31.2 bits (69), Expect = 2.5
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 193 SSPETSSQQCFPLTCS-----PGHVASVEPVT-----PAVKKSSNTNSSKKSSQRGRPKG 242
S SSQ P T S P +V V+P+T P K S + + S+ +P
Sbjct: 596 SGSPPSSQSIPPSTTSAPPLPPRNVGKVDPLTTTPPPPVAKTSGTLEAMNQPSKSSQPGT 655
Query: 243 SKNKPQPHP 251
S++KP P P
Sbjct: 656 SQSKPPPLP 664
>VLPC_MYCHR (P29230) Variant surface antigen C precursor (VLPC
prolipoprotein)
Length = 160
Score = 30.8 bits (68), Expect = 3.2
Identities = 26/107 (24%), Positives = 45/107 (41%), Gaps = 2/107 (1%)
Query: 144 QQNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNAS--SPETSSQQ 201
Q +G + S TS + T+ T+ Q SP + + A+ SPE+ SQ+
Sbjct: 51 QSGTTTGGHSGSGTSTSGGQSGTTSGSGTTTGEQTETAPKSPESGSQEATPKSPESGSQE 110
Query: 202 CFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRGRPKGSKNKPQ 248
P + G + + + + + SS+ SQ PK S++ Q
Sbjct: 111 ATPKSPESGSQEAAPKSSESGSQEAAPKSSESGSQEAAPKSSESGSQ 157
>VL96_IRV1 (P22856) L96 protein
Length = 867
Score = 30.8 bits (68), Expect = 3.2
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Query: 139 PFLTSQQNRLSGFATTSATSPTSELREITNV--FVRTSPHQIIRQRASPSATVRNASSPE 196
P +S + + TT + +++IT R SP +R+ +PS ++ P
Sbjct: 395 PRSSSPKYKTKDLVTTDESDGEIVVKKITRKPKSPRRSPPASVRRSRTPSVPKSPSARPR 454
Query: 197 TSSQQC-FPLTCSPGHV--ASVEPVTPAVKKSSNTNSSKKSSQRGRPKGSKNKPQ 248
+ S +T G +SV P +P+V+ S + + S RPK +P+
Sbjct: 455 SKSPSVRAEITDDEGETPPSSVRPKSPSVRPKSPSVRPRSKSPSVRPKSPSARPR 509
>TP2A_CHICK (O42130) DNA topoisomerase II, alpha isozyme (EC 5.99.1.3)
Length = 1553
Score = 30.8 bits (68), Expect = 3.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 40 KAINSGEEQKEQLQVLIDSGYTSEEIEGWK 69
K + + +KE +QVLI GY S+ ++ WK
Sbjct: 1063 KIVIENKPKKELIQVLIQRGYESDPVKAWK 1092
>SRC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor
(Scavenger receptor expressed by endothelial cells 2
protein) (SREC-II)
Length = 833
Score = 30.8 bits (68), Expect = 3.2
Identities = 34/127 (26%), Positives = 49/127 (37%), Gaps = 14/127 (11%)
Query: 125 PRILTQTNGIGACLPFLTSQQNRLSGFATTSATSPTSELREITNVFVRTS---PHQIIRQ 181
PR + G+G P R A +A+ +ELR+ T R P Q ++
Sbjct: 714 PRARARGRGLGLSEPTDAGGPPRS---APEAASMLAAELRDKTRSLGRAEKPPPPQKAKR 770
Query: 182 RASPSATVRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQ-RGRP 240
P+ATVR AS+ E S + ++ P TP K KKS + G P
Sbjct: 771 SVLPAATVRTASASEASGSE-------KAAASAPAPETPRKKTPIQKPPRKKSREAAGEP 823
Query: 241 KGSKNKP 247
+ P
Sbjct: 824 SRAGTAP 830
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.314 0.129 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,480,327
Number of Sequences: 164201
Number of extensions: 1131073
Number of successful extensions: 4242
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 4163
Number of HSP's gapped (non-prelim): 112
length of query: 251
length of database: 59,974,054
effective HSP length: 108
effective length of query: 143
effective length of database: 42,240,346
effective search space: 6040369478
effective search space used: 6040369478
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0019b.10