BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0018.1
(127 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RBM8_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA binding motif pr... 51 5e-07
RBM8_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA binding motif pr... 51 5e-07
RBM8_DROME (Q9V535) RNA-binding protein 8A (Tsunagi protein) 49 2e-06
PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 38 0.003
PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b... 37 0.010
PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 36 0.013
PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 36 0.013
PAB2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bin... 36 0.017
PAB1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bindi... 36 0.017
PAB1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bin... 36 0.017
PAB1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bin... 36 0.017
PAB1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bin... 36 0.017
PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 35 0.022
NUCL_XENLA (P20397) Nucleolin (Protein C23) 35 0.022
PAB3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bin... 35 0.038
TR2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha) 34 0.065
TR2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha) 34 0.065
RX21_DROME (Q24491) RNA binding protein Rsf1 (RNA binding protei... 34 0.065
PAB4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bin... 34 0.065
TR2B_RAT (P62997) Arginine/serine-rich splicing factor 10 (Trans... 33 0.085
>RBM8_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA binding motif
protein 8A) (Ribonucleoprotein RBM8A)
Length = 174
Score = 50.8 bits (120), Expect = 5e-07
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIR--RKNARHP 53
GY L+EYE +EA+ A+E LNG +L+ Q I VDW F GP R R+ +R P
Sbjct: 115 GYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSP 169
>RBM8_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA binding motif
protein 8A) (Ribonucleoprotein RBM8A) (RNA-binding
protein Y14) (Binder of OVCA1-1) (BOV-1)
Length = 174
Score = 50.8 bits (120), Expect = 5e-07
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIR--RKNARHP 53
GY L+EYE +EA+ A+E LNG +L+ Q I VDW F GP R R+ +R P
Sbjct: 115 GYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKRRGGRRRSRSP 169
>RBM8_DROME (Q9V535) RNA-binding protein 8A (Tsunagi protein)
Length = 165
Score = 49.3 bits (116), Expect = 2e-06
Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGP--INESIRRK 48
GYAL+EYE ++A A E LNG+E++ Q I VDW F GP + +S +R+
Sbjct: 115 GYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRVKKSEKRR 164
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC
5.2.1.8) (PPIase E) (Rotamase E) (Cyclophilin E)
(Cyclophilin 33)
Length = 300
Score = 38.1 bits (87), Expect = 0.003
Identities = 18/35 (51%), Positives = 26/35 (73%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWA 35
G+A IEYE++E+A AI+N+N SEL + I V+ A
Sbjct: 48 GFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLA 82
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated
RNA-binding protein PUB1 (ARS consensus binding protein
ACBP-60) (Poly(U)-binding protein) (Poly
uridylate-binding protein)
Length = 452
Score = 36.6 bits (83), Expect = 0.010
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 2 YALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSS 38
YA +EY ++ +A A++ LNG ++ + ++WAF S
Sbjct: 116 YAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 152
Score = 30.0 bits (66), Expect = 0.94
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWA 35
GY + + ++A+NA++++ G +L + + ++WA
Sbjct: 203 GYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 237
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC
5.2.1.8) (PPIase E) (Rotamase E) (Cyclophilin E)
(Cyclophilin 33)
Length = 301
Score = 36.2 bits (82), Expect = 0.013
Identities = 17/35 (48%), Positives = 25/35 (70%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWA 35
G+A +E+E AE+A AI+N+N SEL + I V+ A
Sbjct: 48 GFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC
5.2.1.8) (PPIase E) (Rotamase E) (Cyclophilin E)
(Cyclophilin 33)
Length = 301
Score = 36.2 bits (82), Expect = 0.013
Identities = 17/35 (48%), Positives = 25/35 (70%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWA 35
G+A +E+E AE+A AI+N+N SEL + I V+ A
Sbjct: 48 GFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82
>PAB2_ARATH (P42731) Polyadenylate-binding protein 2
(Poly(A)-binding protein 2) (PABP 2)
Length = 629
Score = 35.8 bits (81), Expect = 0.017
Identities = 20/62 (32%), Positives = 28/62 (44%), Gaps = 6/62 (9%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRKNARHPVMNLNIY 60
GY ++Y E A+ AIE LNG L + +YV GP R + + N+Y
Sbjct: 165 GYGFVQYANEESAQKAIEKLNGMLLNDKQVYV------GPFLRRQERDSTANKTKFTNVY 218
Query: 61 FK 62
K
Sbjct: 219 VK 220
Score = 30.4 bits (67), Expect = 0.72
Identities = 18/68 (26%), Positives = 30/68 (43%), Gaps = 6/68 (8%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIR------RKNARHPV 54
G+ + +E A++A A+E+LNG + + YV A +R K A
Sbjct: 256 GFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF 315
Query: 55 MNLNIYFK 62
+ N+Y K
Sbjct: 316 QSSNLYVK 323
>PAB1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding
protein 1) (PABP 1)
Length = 636
Score = 35.8 bits (81), Expect = 0.017
Identities = 16/48 (33%), Positives = 27/48 (55%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRK 48
G+ + +ER E+A+ A++ +NG EL + IYV A ++RK
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Score = 29.6 bits (65), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (58%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYV 32
GY + +E E A+ AIE +NG L + ++V
Sbjct: 139 GYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
>PAB1_MOUSE (P29341) Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1)
Length = 636
Score = 35.8 bits (81), Expect = 0.017
Identities = 16/48 (33%), Positives = 27/48 (55%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRK 48
G+ + +ER E+A+ A++ +NG EL + IYV A ++RK
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Score = 29.6 bits (65), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (58%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYV 32
GY + +E E A+ AIE +NG L + ++V
Sbjct: 139 GYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
>PAB1_HUMAN (P11940) Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1)
Length = 636
Score = 35.8 bits (81), Expect = 0.017
Identities = 16/48 (33%), Positives = 27/48 (55%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRK 48
G+ + +ER E+A+ A++ +NG EL + IYV A ++RK
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Score = 29.6 bits (65), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (58%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYV 32
GY + +E E A+ AIE +NG L + ++V
Sbjct: 139 GYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
>PAB1_BOVIN (P61286) Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1)
Length = 636
Score = 35.8 bits (81), Expect = 0.017
Identities = 16/48 (33%), Positives = 27/48 (55%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRK 48
G+ + +ER E+A+ A++ +NG EL + IYV A ++RK
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Score = 29.6 bits (65), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (58%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYV 32
GY + +E E A+ AIE +NG L + ++V
Sbjct: 139 GYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC
5.2.1.8) (PPIase E) (Rotamase E) (Cyclophilin E)
Length = 273
Score = 35.4 bits (80), Expect = 0.022
Identities = 15/35 (42%), Positives = 25/35 (70%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWA 35
G+A +E+E E+A +AI+N+N SE+ + I V+ A
Sbjct: 12 GFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA 46
>NUCL_XENLA (P20397) Nucleolin (Protein C23)
Length = 650
Score = 35.4 bits (80), Expect = 0.022
Identities = 14/40 (35%), Positives = 29/40 (72%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGP 40
G+A IE+ AE+AK+A+++ N +E+ ++I ++++ GP
Sbjct: 451 GFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGP 490
Score = 30.4 bits (67), Expect = 0.72
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDW 34
G A +E+ +EA A+E G+E+ ++I+VD+
Sbjct: 362 GIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDF 395
>PAB3_HUMAN (Q9H361) Polyadenylate-binding protein 3
(Poly(A)-binding protein 3) (PABP 3) (Testis-specific
poly(A)-binding protein)
Length = 631
Score = 34.7 bits (78), Expect = 0.038
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYV 32
G+ + +ER E+A+ A++ +NG EL + IYV
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 27.3 bits (59), Expect = 6.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYV 32
GY + +E E A+ AI+ +NG L + ++V
Sbjct: 139 GYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
>TR2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)
Length = 281
Score = 33.9 bits (76), Expect = 0.065
Identities = 14/37 (37%), Positives = 25/37 (66%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFS 37
G+A + +ER +++K A+E NG EL + I VD++ +
Sbjct: 159 GFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSIT 195
>TR2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)
Length = 282
Score = 33.9 bits (76), Expect = 0.065
Identities = 14/37 (37%), Positives = 25/37 (66%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFS 37
G+A + +ER +++K A+E NG EL + I VD++ +
Sbjct: 161 GFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSIT 197
>RX21_DROME (Q24491) RNA binding protein Rsf1 (RNA binding protein
Rox21)
Length = 197
Score = 33.9 bits (76), Expect = 0.065
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVD 33
G+A +E+E ++A+ A + LNGSELL + V+
Sbjct: 44 GFAFVEFEHRDDAEKACDILNGSELLGSQLRVE 76
>PAB4_HUMAN (Q13310) Polyadenylate-binding protein 4
(Poly(A)-binding protein 4) (PABP 4) (Inducible
poly(A)-binding protein) (iPABP) (Activated-platelet
protein-1) (APP-1)
Length = 644
Score = 33.9 bits (76), Expect = 0.065
Identities = 15/48 (31%), Positives = 26/48 (53%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESIRRK 48
G+ + YE+ E+A A+E +NG E+ + I+V A ++RK
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRK 279
Score = 30.4 bits (67), Expect = 0.72
Identities = 13/32 (40%), Positives = 19/32 (58%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYV 32
GYA + +E E A AIE +NG L + ++V
Sbjct: 139 GYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
>TR2B_RAT (P62997) Arginine/serine-rich splicing factor 10
(Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
homolog) (RA301)
Length = 288
Score = 33.5 bits (75), Expect = 0.085
Identities = 15/40 (37%), Positives = 24/40 (59%)
Query: 1 GYALIEYERAEEAKNAIENLNGSELLTQNIYVDWAFSSGP 40
G+A + +E ++AK A E NG EL + I VD++ + P
Sbjct: 160 GFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRP 199
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.141 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,176,812
Number of Sequences: 164201
Number of extensions: 582617
Number of successful extensions: 1577
Number of sequences better than 10.0: 130
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1365
Number of HSP's gapped (non-prelim): 224
length of query: 127
length of database: 59,974,054
effective HSP length: 103
effective length of query: 24
effective length of database: 43,061,351
effective search space: 1033472424
effective search space used: 1033472424
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0018.1