BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0017.17
(167 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TAM_STRCO (Q9K3T2) Trans-aconitate 2-methyltransferase (EC 2.1.1... 32 0.52
TSSP_HUMAN (Q9NQE7) Thymus-specific serine protease precursor (E... 31 1.1
CBPD_HUMAN (O75976) Carboxypeptidase D precursor (EC 3.4.17.-) (... 31 1.1
UVRA_STRR6 (P63385) UvrABC system protein A (UvrA protein) (Exci... 31 1.5
UVRA_STRPN (P63384) UvrABC system protein A (UvrA protein) (Exci... 31 1.5
CAR8_HUMAN (Q9Y2G2) Caspase recruitment domain protein 8 (Apopto... 31 1.5
HNF4_DROME (P49866) Transcription factor HNF-4 homolog (dHNF4) 30 2.0
YBE7_YEAST (P34216) Hypothetical 150.8 kDa protein in SEC17-QCR1... 30 2.6
TSSP_MOUSE (Q9QXE5) Thymus-specific serine protease precursor (E... 30 2.6
MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia p... 30 2.6
VG09_BPT4 (P10927) Baseplate structural protein Gp9 (Baseplate w... 30 3.3
MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia p... 29 4.4
UVRA_STRMU (P72481) UvrABC system protein A (UvrA protein) (Exci... 29 5.7
Z295_HUMAN (Q9ULJ3) Zinc finger protein 295 (Zinc finger and BTB... 28 7.4
SUA5_YEAST (P32579) SUA5 protein 28 7.4
IF2_LACPL (Q88VK7) Translation initiation factor IF-2 28 7.4
DPO2_HUMAN (Q14181) DNA polymerase alpha 70 kDa subunit (DNA pol... 28 7.4
YFI3_YEAST (P43596) Hypothetical 90.9 kDa protein in GCN20-CMK1 ... 28 9.7
SML1_YEAST (Q04964) Ribonucleotide reductase inhibitor protein SML1 28 9.7
CAN5_RAT (Q8R4C0) Calpain 5 (EC 3.4.22.-) 28 9.7
>TAM_STRCO (Q9K3T2) Trans-aconitate 2-methyltransferase (EC
2.1.1.144)
Length = 303
Score = 32.3 bits (72), Expect = 0.52
Identities = 19/45 (42%), Positives = 23/45 (50%), Gaps = 1/45 (2%)
Query: 84 GCSCSAASQLLNDRW-TAAIQSYNNSKDSPEKPVMYSGGTSVWTH 127
GC + LL DRW TA I Y+NS E+ Y+G TS H
Sbjct: 45 GCGPGNVTVLLADRWPTARITGYDNSPRMLERARQYAGPTSGGGH 89
>TSSP_HUMAN (Q9NQE7) Thymus-specific serine protease precursor (EC
3.4.-.-)
Length = 514
Score = 31.2 bits (69), Expect = 1.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 118 YSGGTSVWTHFRLPHQIMSPAASAPPSVSQLDF 150
Y+G + W + PH I + AS+ P + LDF
Sbjct: 186 YAGSLAAWARLKFPHLIFASVASSAPVRAVLDF 218
>CBPD_HUMAN (O75976) Carboxypeptidase D precursor (EC 3.4.17.-)
(gp180)
Length = 1380
Score = 31.2 bits (69), Expect = 1.1
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 20 PNQRNRSTNRRKSSDRLDRTNSIGNDLEKNQFASSRNVQVQDRIDAVSSNLVNENPYSRF 79
P+ R R+ + +S ++ +TN+ G DL+ + N Q A+ NL+ + +S
Sbjct: 1038 PDGRERAQEKDCTS-KIGQTNARGKDLDTD----FTNNASQPETKAIIENLIQKQDFSLS 1092
Query: 80 VALDGCSCSAASQLLNDRWTAAIQSYNNSKDSPEKPVMYS 119
VALDG S L+ + +Q+ N + +Y+
Sbjct: 1093 VALDG-----GSMLVTYPYDKPVQTVENKETLKHLASLYA 1127
>UVRA_STRR6 (P63385) UvrABC system protein A (UvrA protein)
(Excinuclease ABC subunit A)
Length = 943
Score = 30.8 bits (68), Expect = 1.5
Identities = 20/69 (28%), Positives = 32/69 (45%), Gaps = 1/69 (1%)
Query: 47 EKNQFASSRNVQVQDRIDAVSSNLVNENPYSRFVALDGCSCSAASQLLNDRWTAAI-QSY 105
E+ + + R ++V + N+ P +F+A+ G S S S L+N AI Q
Sbjct: 604 EERRVGNGRFIEVIGARENNLQNVTARFPLGKFIAVTGVSGSGKSTLINSILKKAIAQKL 663
Query: 106 NNSKDSPEK 114
N + D P K
Sbjct: 664 NRNSDKPGK 672
>UVRA_STRPN (P63384) UvrABC system protein A (UvrA protein)
(Excinuclease ABC subunit A)
Length = 943
Score = 30.8 bits (68), Expect = 1.5
Identities = 20/69 (28%), Positives = 32/69 (45%), Gaps = 1/69 (1%)
Query: 47 EKNQFASSRNVQVQDRIDAVSSNLVNENPYSRFVALDGCSCSAASQLLNDRWTAAI-QSY 105
E+ + + R ++V + N+ P +F+A+ G S S S L+N AI Q
Sbjct: 604 EERRVGNGRFIEVIGARENNLQNVTARFPLGKFIAVTGVSGSGKSTLINSILKKAIAQKL 663
Query: 106 NNSKDSPEK 114
N + D P K
Sbjct: 664 NRNSDKPGK 672
>CAR8_HUMAN (Q9Y2G2) Caspase recruitment domain protein 8 (Apoptotic
protein NDPP1) (DACAR) (CARD-inhibitor of NF-kappaB
activating ligand) (CARDINAL) (TUCAN)
Length = 431
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/40 (42%), Positives = 22/40 (54%)
Query: 121 GTSVWTHFRLPHQIMSPAASAPPSVSQLDFLGELNRQMQS 160
GT VW P + AASAPP S F+ E +RQ+Q+
Sbjct: 318 GTLVWDTEVKPVDLQLVAASAPPPFSGAAFVKENHRQLQA 357
>HNF4_DROME (P49866) Transcription factor HNF-4 homolog (dHNF4)
Length = 666
Score = 30.4 bits (67), Expect = 2.0
Identities = 26/95 (27%), Positives = 42/95 (43%), Gaps = 6/95 (6%)
Query: 14 VKRYAPPNQRNRSTNRRKSSDRLDRTNSIGNDLEKNQFASSRNVQVQDRIDAVSSNLVNE 73
+K+ A N+R+R + RR S+D D GN L + N Q + A +NE
Sbjct: 169 MKKEAVQNERDRISCRRTSNDDPDP----GNGLSVISLVKAENESRQSKAGAAMEPNINE 224
Query: 74 N-PYSRFVALDGCSCSAASQLLN-DRWTAAIQSYN 106
+ +F +++ S QLL W I ++N
Sbjct: 225 DLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFN 259
>YBE7_YEAST (P34216) Hypothetical 150.8 kDa protein in SEC17-QCR1
intergenic region
Length = 1381
Score = 30.0 bits (66), Expect = 2.6
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 130 LPHQIMSPAASAPPSVSQL----DFLGELNRQMQSVNPSFST 167
+PHQ+ +PA + P+V Q+ G LN + ++NPSFS+
Sbjct: 396 MPHQVSAPAVNTQPTVPQVLPQNSNNGSLN-DLLALNPSFSS 436
>TSSP_MOUSE (Q9QXE5) Thymus-specific serine protease precursor (EC
3.4.-.-)
Length = 509
Score = 30.0 bits (66), Expect = 2.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 118 YSGGTSVWTHFRLPHQIMSPAASAPPSVSQLDF 150
Y+G + W + PH + + AS+ P + +DF
Sbjct: 185 YAGSLATWARLKFPHLVFAAVASSAPLSAVVDF 217
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia
protein 3 homolog (Histone-lysine N-methyltransferase, H3
lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR
protein)
Length = 4911
Score = 30.0 bits (66), Expect = 2.6
Identities = 18/48 (37%), Positives = 25/48 (51%), Gaps = 4/48 (8%)
Query: 100 AAIQSYNNSKDSPEKPVMYSGGTSVWTHFRLPHQIM---SPAASAPPS 144
AA +S KD EK MYS T +TH + + + +P AS PP+
Sbjct: 3861 AAPRSKKRKKDEEEKQAMYS-STDTFTHLKQQNNLSNPPTPPASLPPT 3907
>VG09_BPT4 (P10927) Baseplate structural protein Gp9 (Baseplate
wedge protein 9)
Length = 288
Score = 29.6 bits (65), Expect = 3.3
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 57 VQVQDRIDAVSSNLVNENPYSRFVALDGCSCSAASQLLNDRWTAAIQSYNNSKDSP 112
+Q D I VS NLV +PYS+ V L S ++ + W +I+S K+SP
Sbjct: 124 IQAIDSIKGVSGNLVVTSPYSK-VTLRCISSDNSTSV----WNYSIESMFGQKESP 174
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia
protein 3 homolog (Histone-lysine N-methyltransferase, H3
lysine-4 specific MLL3) (EC 2.1.1.43)
Length = 4903
Score = 29.3 bits (64), Expect = 4.4
Identities = 18/48 (37%), Positives = 25/48 (51%), Gaps = 4/48 (8%)
Query: 100 AAIQSYNNSKDSPEKPVMYSGGTSVWTHFRLPHQIM---SPAASAPPS 144
AA +S KD EK MYS S +TH + + + +P AS PP+
Sbjct: 3854 AAPRSKKRKKDEEEKQAMYSSSDS-FTHLKQQNNLSNPPTPPASLPPT 3900
>UVRA_STRMU (P72481) UvrABC system protein A (UvrA protein)
(Excinuclease ABC subunit A)
Length = 943
Score = 28.9 bits (63), Expect = 5.7
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 65 AVSSNLVNEN---PYSRFVALDGCSCSAASQLLNDRWTAAI-QSYNNSKDSPEKPVMYSG 120
A +NL N N P +F+A+ G S S S L+N I Q N + + P K SG
Sbjct: 619 AAENNLQNINVKFPLGKFIAVTGVSGSGKSTLVNSILKKVIAQKLNRNSEKPGKYKSISG 678
>Z295_HUMAN (Q9ULJ3) Zinc finger protein 295 (Zinc finger and BTB
domain containing protein 21)
Length = 1066
Score = 28.5 bits (62), Expect = 7.4
Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 21/143 (14%)
Query: 20 PNQRNRSTNRRKSSDRLDRTNSIGNDLEKNQFASSRNVQVQDRIDAVSSNLVNENPYSRF 79
P +R +RR +L + N G+ + ++ F + + D D S+L + F
Sbjct: 481 PAKRRFQADRRLPFKKL-KVNEHGSPVSEDNFEEGSSPTLLDA-DFPDSDLNKDE----F 534
Query: 80 VALDGC------SCSAASQLLNDRWTAAIQSYNNSKDSPEKPVM-------YSGGTSVWT 126
L+G C ++ R TA + + N +PEKP + VWT
Sbjct: 535 GELEGTRPNKKFKCKHCLKIF--RSTAGLHRHVNMYHNPEKPYACDICHKRFHTNFKVWT 592
Query: 127 HFRLPHQIMSPAASAPPSVSQLD 149
H + H I+ + A S + LD
Sbjct: 593 HCQTQHGIVKNPSPASSSHAVLD 615
>SUA5_YEAST (P32579) SUA5 protein
Length = 426
Score = 28.5 bits (62), Expect = 7.4
Identities = 11/38 (28%), Positives = 21/38 (54%)
Query: 36 LDRTNSIGNDLEKNQFASSRNVQVQDRIDAVSSNLVNE 73
++R G +++ N FA+ R V D++D + +NE
Sbjct: 367 IERLGQSGEEIQTNLFAALRKVDENDKVDLIFVEGINE 404
>IF2_LACPL (Q88VK7) Translation initiation factor IF-2
Length = 858
Score = 28.5 bits (62), Expect = 7.4
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 21 NQRNRSTNRRKSSDRLDRTNSIGNDLEKNQFASSRN 56
N NRS N +S+ +RTNS GN N +RN
Sbjct: 155 NNNNRSNNNNRSNTSNNRTNSTGN--RTNNGGQNRN 188
>DPO2_HUMAN (Q14181) DNA polymerase alpha 70 kDa subunit (DNA
polymerase subunit B)
Length = 598
Score = 28.5 bits (62), Expect = 7.4
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 93 LLNDRWTAAIQSYNNSKDSPEKPVMYSGGTSVWTHFRLPHQIMSPAASAPPSVSQLDFLG 152
LLN T + S + +PE P+ T R PHQ++SP++ +P + +
Sbjct: 109 LLNSYTTPSKGSQKRAISTPETPL-----TKRSVSTRSPHQLLSPSSFSPSATPSQKYNS 163
Query: 153 ELNR 156
NR
Sbjct: 164 RSNR 167
>YFI3_YEAST (P43596) Hypothetical 90.9 kDa protein in GCN20-CMK1
intergenic region
Length = 787
Score = 28.1 bits (61), Expect = 9.7
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 15 KRYAPPNQRNRSTNRRKSSDRLD--RTNSIGND 45
KR APP ++ ST KS+D+++ +T SI D
Sbjct: 83 KRPAPPKKKAPSTQNSKSNDKVEKKKTTSIAKD 115
>SML1_YEAST (Q04964) Ribonucleotide reductase inhibitor protein
SML1
Length = 104
Score = 28.1 bits (61), Expect = 9.7
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 7 PAPPSESVKRYAPPNQRNRSTNRRKSS------DRLDRTNSIGNDLEKNQFAS 53
P PP V + N S + SS D +R NSI +D+ N+F S
Sbjct: 35 PLPPMAEVPMLSTQNSMGSSASASASSLEMWEKDLEERLNSIDHDMNNNKFGS 87
>CAN5_RAT (Q8R4C0) Calpain 5 (EC 3.4.22.-)
Length = 640
Score = 28.1 bits (61), Expect = 9.7
Identities = 15/58 (25%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 63 IDAVSSNLVNENPYSRFVALDGCSCSAASQLLNDRWTAAIQSYNNSKDSPEKPVMYSG 120
+D +SS+ +++ + CS A+ + L W I + + +PEKP Y+G
Sbjct: 65 VDGISSHDLHQGQVGNCWFVAACSSLASRESL---WQKVIPDWKEQEWNPEKPDSYAG 119
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.311 0.125 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,751,683
Number of Sequences: 164201
Number of extensions: 674921
Number of successful extensions: 1601
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1592
Number of HSP's gapped (non-prelim): 27
length of query: 167
length of database: 59,974,054
effective HSP length: 102
effective length of query: 65
effective length of database: 43,225,552
effective search space: 2809660880
effective search space used: 2809660880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0017.17