BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0016.10
(196 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YAQ9_SCHPO (Q10108) Hypothetical protein C18G6.09c in chromosome I 33 0.55
WR35_ARATH (O64747) Probable WRKY transcription factor 35 (WRKY ... 32 0.71
SGT1_ARATH (Q9LSM5) SGT1 protein homolog At5g65490 32 0.71
DYHC_HUMAN (Q14204) Dynein heavy chain, cytosolic (DYHC) (Cytopl... 32 0.71
DYHC_RAT (P38650) Dynein heavy chain, cytosolic (DYHC) (Cytoplas... 32 0.93
DYHC_MOUSE (Q9JHU4) Dynein heavy chain, cytosolic (DYHC) (Cytopl... 32 0.93
TRMD_STRAW (Q82JW3) tRNA (Guanine-N(1)-)-methyltransferase (EC 2... 31 1.6
PMP1_CHLPN (Q9Z9G5) Probable outer membrane protein pmp1 precurs... 31 1.6
PODX_HUMAN (O00592) Podocalyxin-like protein 1 precursor 31 2.1
PYRH_UREPA (Q9PPX6) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine ... 30 2.7
LPXA_PSESM (Q886N1) Acyl-[acyl-carrier-protein]--UDP-N-acetylglu... 30 2.7
PPHL_MOUSE (Q8K2H1) Periphilin 1 30 3.5
YOF7_SCHPO (Q9P7E1) RING finger protein P4H10.07 in chromosome II 30 4.6
FMT_CHLTR (O84535) Methionyl-tRNA formyltransferase (EC 2.1.2.9) 30 4.6
SOX3_XENLA (P55863) Transcription factor SOX-3 (SOX-11) 29 6.0
PGCV_BOVIN (P81282) Versican core protein precursor (Large fibro... 29 6.0
CRAC_DICDI (P35401) Protein CRAC 29 6.0
CARA_STRCO (Q9KXR5) Carbamoyl-phosphate synthase small chain (EC... 29 6.0
SPAA_STRDO (P21979) Cell surface antigen I/II precursor 29 7.9
MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia p... 29 7.9
>YAQ9_SCHPO (Q10108) Hypothetical protein C18G6.09c in chromosome I
Length = 312
Score = 32.7 bits (73), Expect = 0.55
Identities = 38/154 (24%), Positives = 64/154 (40%), Gaps = 10/154 (6%)
Query: 38 GGKEIQSIEAPGVCNTLSIGPSNENMAQFDLPSLAKPKITSKYVKPNVWVRGMINEARVG 97
GG + S + + +SI P + Q +P+ KPK T + N+ G N R G
Sbjct: 21 GGAMVASSDVEFSLDGMSIMPQRDGNLQ--IPNFVKPKST--FATSNI---GESNGKRNG 73
Query: 98 PNVW--IRNPSEHNQHNRVGASGKDTNNLASSTGEQGALSVGTSTKRLSPNVELYQNATF 155
V R+ S H+ + SG ++N+ S +G + V+ + +
Sbjct: 74 DKVRGNRRSKSGHSSYAGSRISGGNSNSHLPSGVASAPAGLGIDKVAVG-EVDSHLKSVS 132
Query: 156 SLTQNSSLIENTVISPPASDTDADLPEAPLAPHN 189
S NSS + + S +SDT++ L P H+
Sbjct: 133 SYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHS 166
>WR35_ARATH (O64747) Probable WRKY transcription factor 35 (WRKY
DNA-binding protein 35)
Length = 427
Score = 32.3 bits (72), Expect = 0.71
Identities = 43/176 (24%), Positives = 71/176 (39%), Gaps = 37/176 (21%)
Query: 40 KEIQSIEAPGVCNTLSIGPSNENMAQFDLPSLAKPKITSKYVKPNVWVRG---------- 89
K++ I AP N+ S G + DL A K K +K + + RG
Sbjct: 193 KKVVCIPAPAAMNSRSSG----EVVPSDL--WAWRKYGQKPIKGSPYPRGYYRCSSSKGC 246
Query: 90 ----MINEARVGPNVW-IRNPSEHN-----QHNRVGASGKDTNNLASSTGEQGALSVGTS 139
+ +R PN+ I SEHN Q N + S + +++ + + + + + T+
Sbjct: 247 SARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSSSSSSLNPSSKSSTAAATT 306
Query: 140 TKRLSPNVELYQNATFSLTQNSSLIENTVISPPASDTDADLPEAPLAPHNEEGRRE 195
SP+ ++QN NSS E + P+S T A + N E R+E
Sbjct: 307 ----SPSSRVFQN-------NSSKDEPNNSNLPSSSTHPPFDAAAIKEENVEERQE 351
>SGT1_ARATH (Q9LSM5) SGT1 protein homolog At5g65490
Length = 643
Score = 32.3 bits (72), Expect = 0.71
Identities = 28/122 (22%), Positives = 49/122 (39%), Gaps = 12/122 (9%)
Query: 80 YVKPNVWVRGMINEARVGPNVWIRNPSEHNQHNRVGASGKDTN------NLASSTGEQGA 133
Y P+V R +EA +G + + Q + G GK + NL +G
Sbjct: 285 YPMPSVSDRDAFSEAELGMKIACGMEMMYQQRKKEGEDGKGISWSKYKDNLEKYGYFEGL 344
Query: 134 LSVGTSTKRLSPNVELYQNATFSLTQNSSLIE------NTVISPPASDTDADLPEAPLAP 187
LS KRL N E Y + S ++ ++ + +++ P S+ D E P +
Sbjct: 345 LSGSKEYKRLMENAEEYHQKSSSFSRTRDIMSAPVRRIDEILALPYSEDDFKGQEVPASD 404
Query: 188 HN 189
++
Sbjct: 405 ND 406
>DYHC_HUMAN (Q14204) Dynein heavy chain, cytosolic (DYHC)
(Cytoplasmic dynein heavy chain 1) (DHC1) (Fragment)
Length = 4594
Score = 32.3 bits (72), Expect = 0.71
Identities = 41/144 (28%), Positives = 61/144 (41%), Gaps = 19/144 (13%)
Query: 43 QSIEAPGVCNTLSIGPSNENMAQFDLPSLAKPKITS---KYVKPNVWVRGMINEARVGPN 99
Q+IE P + +L I P N+A+ KPK+T K P +N+ + G N
Sbjct: 146 QNIEIPEI--SLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPT-----FLNQLQSGVN 198
Query: 100 VWIRNPSEHNQHNRVGASGKDTNNLASSTGEQGALSVGTSTKRLSPNVELYQNATFSLTQ 159
WIR + + +R ASG ++ + AL KR SP V L T + +
Sbjct: 199 RWIREIQKVTKLDRDPASGTALQEISFWLNLERAL-YRIQEKRESPEVLL----TLDILK 253
Query: 160 NSSLIENTVISPPASDTDADLPEA 183
+ TV + DTD L +A
Sbjct: 254 HGKRFHATV----SFDTDTGLKQA 273
>DYHC_RAT (P38650) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic
dynein heavy chain) (MAP 1C)
Length = 4644
Score = 32.0 bits (71), Expect = 0.93
Identities = 41/144 (28%), Positives = 61/144 (41%), Gaps = 19/144 (13%)
Query: 43 QSIEAPGVCNTLSIGPSNENMAQFDLPSLAKPKITS---KYVKPNVWVRGMINEARVGPN 99
Q+IE P + +L I P N+A+ KPK+T K P +N+ + G N
Sbjct: 196 QNIEIPEI--SLPIHPIITNVAKQCYERGEKPKVTDFGDKVEDPT-----FLNQLQSGVN 248
Query: 100 VWIRNPSEHNQHNRVGASGKDTNNLASSTGEQGALSVGTSTKRLSPNVELYQNATFSLTQ 159
WIR + + +R ASG ++ + AL KR SP V L T + +
Sbjct: 249 RWIREIQKVTKLDRDPASGTALQEISFWLNLERAL-YRIQEKRESPEVLL----TLDILK 303
Query: 160 NSSLIENTVISPPASDTDADLPEA 183
+ TV + DTD L +A
Sbjct: 304 HGKRFHATV----SFDTDTGLKQA 323
>DYHC_MOUSE (Q9JHU4) Dynein heavy chain, cytosolic (DYHC)
(Cytoplasmic dynein heavy chain)
Length = 4644
Score = 32.0 bits (71), Expect = 0.93
Identities = 41/144 (28%), Positives = 61/144 (41%), Gaps = 19/144 (13%)
Query: 43 QSIEAPGVCNTLSIGPSNENMAQFDLPSLAKPKITS---KYVKPNVWVRGMINEARVGPN 99
Q+IE P + +L I P N+A+ KPK+T K P +N+ + G N
Sbjct: 196 QNIEIPEI--SLPIHPIITNVAKQCYERGEKPKVTDFGDKVEDPT-----FLNQLQSGVN 248
Query: 100 VWIRNPSEHNQHNRVGASGKDTNNLASSTGEQGALSVGTSTKRLSPNVELYQNATFSLTQ 159
WIR + + +R ASG ++ + AL KR SP V L T + +
Sbjct: 249 RWIREIQKVTKLDRDPASGTALQEISFWLNLERAL-YRIQEKRESPEVLL----TLDILK 303
Query: 160 NSSLIENTVISPPASDTDADLPEA 183
+ TV + DTD L +A
Sbjct: 304 HGKRFHATV----SFDTDTGLKQA 323
>TRMD_STRAW (Q82JW3) tRNA (Guanine-N(1)-)-methyltransferase (EC
2.1.1.31) (M1G-methyltransferase) (tRNA [GM37]
methyltransferase)
Length = 282
Score = 31.2 bits (69), Expect = 1.6
Identities = 18/65 (27%), Positives = 34/65 (51%), Gaps = 4/65 (6%)
Query: 129 GEQGALSVGTSTKRLSP----NVELYQNATFSLTQNSSLIENTVISPPASDTDADLPEAP 184
GE L + + RL P N E +++ +F+ ++L+E V + P + D ++PE
Sbjct: 153 GEAAVLVITEAVARLLPGVLGNAESHRDDSFAPGAMANLLEGPVYTKPPAWRDREIPEVL 212
Query: 185 LAPHN 189
L+ H+
Sbjct: 213 LSGHH 217
>PMP1_CHLPN (Q9Z9G5) Probable outer membrane protein pmp1 precursor
(Polymorphic membrane protein 1) (Outer membrane protein
6)
Length = 922
Score = 31.2 bits (69), Expect = 1.6
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 97 GPNVWIRNPSEHNQHNRVGASGKDTNNLASSTGEQGALSVGTSTKRLS--PNVELYQNAT 154
GP ++I N S N N GA DT S + E+G ++ + L + L QNA
Sbjct: 306 GPTLFINNISYANSQNLGGAIAIDTGGEISLSAEKGTITFQGNRTSLPFLNGIHLLQNAK 365
Query: 155 FSLTQNSSLIENTVISPPASDTD 177
F Q + P S+ D
Sbjct: 366 FLKLQARNGYSIEFYDPITSEAD 388
>PODX_HUMAN (O00592) Podocalyxin-like protein 1 precursor
Length = 528
Score = 30.8 bits (68), Expect = 2.1
Identities = 24/81 (29%), Positives = 32/81 (38%), Gaps = 6/81 (7%)
Query: 113 RVGASGKDTNNLAS--STGEQGALSVGTSTKRLSPNVELYQNATFSLT----QNSSLIEN 166
R G SG T + S ST +V TST PN QN T ++S +
Sbjct: 111 RGGGSGNPTTTIESPKSTKSADTTTVATSTATAKPNTTSSQNGAEDTTNSGGKSSHSVTT 170
Query: 167 TVISPPASDTDADLPEAPLAP 187
+ S A P +PL+P
Sbjct: 171 DLTSTKAEHLTTPHPTSPLSP 191
>PYRH_UREPA (Q9PPX6) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine
monophosphate kinase) (UMP kinase)
Length = 235
Score = 30.4 bits (67), Expect = 2.7
Identities = 14/44 (31%), Positives = 27/44 (60%), Gaps = 2/44 (4%)
Query: 129 GEQGALSVGTSTKRLSPNVELYQNATF--SLTQNSSLIENTVIS 170
G+ G V S +++PN + Y++ TF +LTQN +++ T ++
Sbjct: 157 GKNGVDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALA 200
>LPXA_PSESM (Q886N1)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine
O-acyltransferase (EC 2.3.1.129)
(UDP-N-acetylglucosamine acyltransferase)
Length = 258
Score = 30.4 bits (67), Expect = 2.7
Identities = 17/45 (37%), Positives = 28/45 (61%), Gaps = 4/45 (8%)
Query: 96 VGPNVWIRNPSEHNQHNRV---GASGKDTNNLASSTGEQGALSVG 137
VGP+V +R P++ +HNR+ + G+DT +L GE+ L +G
Sbjct: 40 VGPHVVLRGPTKIGKHNRIYQFSSVGEDTPDL-KYKGEETRLVIG 83
>PPHL_MOUSE (Q8K2H1) Periphilin 1
Length = 381
Score = 30.0 bits (66), Expect = 3.5
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 106 SEHNQHNRVGASGKDTNNLASSTGEQGALSVGTSTKRLSPNVELYQNATFSLTQNSSLIE 165
S+H + +RVGAS K N G++ ++ +++ SP+ ++ +L + S L E
Sbjct: 181 SQHRKSSRVGASYKRQNEAIRGRGKERSIQSVKTSRDASPSSSSAVASSKALDKPSRLTE 240
Query: 166 NTVI---SPPASDTDADLPEAPLAPHNE 190
+ S A++T E+ LA NE
Sbjct: 241 KELAEAESKWANETLEKSDESNLAEMNE 268
>YOF7_SCHPO (Q9P7E1) RING finger protein P4H10.07 in chromosome II
Length = 583
Score = 29.6 bits (65), Expect = 4.6
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 106 SEHNQHNRVGASGKD------TNNLASSTGEQGALSVGTSTKRLSPNVELYQNATFSLTQ 159
S H N + G++ NNL S G L V + T N+E Y A +
Sbjct: 165 SNHEDENVSSSGGQEMQDHGSVNNLESPGTAIGRLPVRSVTSLADSNMEDYTRAVMNYIN 224
Query: 160 NSSLIENTVISPPAS 174
NS + +SP S
Sbjct: 225 NSENTQQASVSPEES 239
>FMT_CHLTR (O84535) Methionyl-tRNA formyltransferase (EC 2.1.2.9)
Length = 316
Score = 29.6 bits (65), Expect = 4.6
Identities = 25/93 (26%), Positives = 36/93 (37%), Gaps = 5/93 (5%)
Query: 40 KEIQSIEAPGVCNTLSIGPSNENMAQFDLPSLAKPKITSKYVKPNVWVRGMINEARVGPN 99
K +Q IEA T+ P NE MA P L K + + P V I P
Sbjct: 180 KTLQEIEA----GTVRHVPQNEAMATL-APKLTKEEGGIHWDAPASQVYAHIRGVSPAPG 234
Query: 100 VWIRNPSEHNQHNRVGASGKDTNNLASSTGEQG 132
W R S+ + R+G + + + G+ G
Sbjct: 235 AWTRYLSQGKEARRLGVLSARMESFSGNYGDPG 267
>SOX3_XENLA (P55863) Transcription factor SOX-3 (SOX-11)
Length = 309
Score = 29.3 bits (64), Expect = 6.0
Identities = 22/101 (21%), Positives = 40/101 (38%), Gaps = 5/101 (4%)
Query: 80 YVKPNVWVRG----MINEARVGPNVWIRNPSEHNQHNRVGASGKDTNNLASSTGEQGALS 135
Y N W G M ++ + + +P +R SG N + +S + ++
Sbjct: 151 YAHMNGWTNGAYSLMQDQLGYSQHPAMNSPQMQQIQHRYDMSGLQYNPMMTSA-QNAYMN 209
Query: 136 VGTSTKRLSPNVELYQNATFSLTQNSSLIENTVISPPASDT 176
ST +SP + SL S++++ SPP + T
Sbjct: 210 AAASTYSMSPAYNQQSSTVMSLASMGSVVKSEPSSPPPAIT 250
>PGCV_BOVIN (P81282) Versican core protein precursor (Large fibroblast
proteoglycan) (Chondroitin sulfate proteoglycan core
protein 2) (PG-M) (Glial hyaluronate-binding protein)
(GHAP)
Length = 3381
Score = 29.3 bits (64), Expect = 6.0
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 116 ASGKDTNNLASSTGEQGALSVGTSTKRLSPNVELYQNATFSLTQNSSLIENTVIS---PP 172
ASG D+ + GE+GA++ + P E +T + T+ + EN +S PP
Sbjct: 2026 ASGTDSPFIDQRLGEEGAINETDQRSTILPTAE--AESTKASTEEGEVKENHTVSMDFPP 2083
Query: 173 ASDTDADLPEAPLAPHNEEGRREV 196
+ D P + P + E+
Sbjct: 2084 TVEPDELWPRQEVNPVRQGNGSEI 2107
>CRAC_DICDI (P35401) Protein CRAC
Length = 697
Score = 29.3 bits (64), Expect = 6.0
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 112 NRVGASG-------KDTNNLASSTGEQGAL-SVGTSTKRLSPNVELYQNATF 155
+RVGA+G + TNNL SST +L S TST + S LY + F
Sbjct: 588 SRVGATGGGSVPSSQSTNNLQSSTSSMSSLSSSSTSTTKRSHPTTLYPDYQF 639
>CARA_STRCO (Q9KXR5) Carbamoyl-phosphate synthase small chain (EC
6.3.5.5) (Carbamoyl-phosphate synthetase glutamine
chain)
Length = 380
Score = 29.3 bits (64), Expect = 6.0
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 34 VNGVGGKEIQSIEAPGVCNTLSIGPSNENMAQFDLPSLAKPKITSKYVKPN-VWVRGMI- 91
V G+ + S G TL+ + + P + I + ++ +WV G +
Sbjct: 31 VGATFGEAVFSTGMTGYQETLTDPSYHRQVVVMTAPHVGNTGINDEDMESRRIWVSGYVV 90
Query: 92 -NEARVGPNVWIRNPS---EHNQHNRVGASGKDTNNLASSTGEQGALSVGTSTKRLSPN 146
+ ARV P+ W S E VG SG DT L E+GA+ VG + P+
Sbjct: 91 RDPARV-PSNWRSTRSLDQELAAQGVVGISGIDTRALTRHLRERGAMRVGIFSGNALPD 148
>SPAA_STRDO (P21979) Cell surface antigen I/II precursor
Length = 1528
Score = 28.9 bits (63), Expect = 7.9
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 104 NPSEHNQHNRVGASGKDTNNLASSTGEQGALSVGTSTKRLSPNVELYQNATFSLTQNSSL 163
NP+ + + S + + A + + GA+SV ST L + Q A +++Q++++
Sbjct: 72 NPATNLPDKQDNPSSQAETSQAQARQKTGAMSVDVSTSELDEAAKSPQEAGVTVSQDATV 131
Query: 164 IENTVISPPASDTDADLPE 182
+ TV P+ + + PE
Sbjct: 132 NKGTV--EPSDEANQKEPE 148
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia
protein 3 homolog (Histone-lysine N-methyltransferase,
H3 lysine-4 specific MLL3) (EC 2.1.1.43)
Length = 4903
Score = 28.9 bits (63), Expect = 7.9
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 143 LSPNVELYQNATFS-----LTQNSSLIENTVISPPASDTDADLPEAPLAPHNE 190
++ N+E+ + T L S + + +SPP S + PEA L+PH+E
Sbjct: 647 VTENIEVLPHQTIVPQEDLLLSEDSEVASKELSPPKSAPETAAPEALLSPHSE 699
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.310 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,348,656
Number of Sequences: 164201
Number of extensions: 992074
Number of successful extensions: 1782
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1778
Number of HSP's gapped (non-prelim): 26
length of query: 196
length of database: 59,974,054
effective HSP length: 105
effective length of query: 91
effective length of database: 42,732,949
effective search space: 3888698359
effective search space used: 3888698359
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0016.10