BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0014.4
         (568 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Y115_BUCAP (Q8KA12) Hypothetical UPF0118 protein BUsg115               32  4.4
PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type...    31  9.9

>Y115_BUCAP (Q8KA12) Hypothetical UPF0118 protein BUsg115
          Length = 364

 Score = 32.0 bits (71), Expect = 4.4
 Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 17/89 (19%)

Query: 475 WNCLCILASGGFSLRRIAYLSFRLGRRRIELLYFLLFMIVVV*FQFLIMLIFLLYVVRET 534
           W  + ++A+    L+   +L    G+R    L  ++ MI+++   F+I ++FL+     +
Sbjct: 40  WASMIVIATWPLMLKMQKFLG---GKR----LVAVIGMIIILLLLFIIPIVFLV----NS 88

Query: 535 LVLTTLPV------TPLPFPDVVWIDEGP 557
           L+ T++P+        L FP+++W+ + P
Sbjct: 89  LIKTSIPLIHWFSSNNLEFPELIWLQDIP 117


>PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type I
           retrotransposable element R1 [Contains: Reverse
           transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
          Length = 1004

 Score = 30.8 bits (68), Expect = 9.9
 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 11/98 (11%)

Query: 258 PSFPRVREVAWR--------VCTWAVPVRVKLHRRGVDVDPSYPLCGLEDEIVEHLFMSC 309
           PS   VRE  W         V T    +   LH+RG+   P   +CG  +E V+HL   C
Sbjct: 888 PSVRFVRENEWMAFGLCLGYVLTGHGSMNGFLHKRGLSNTPVC-MCGAPNEDVKHLLGEC 946

Query: 310 NVSRGCWFARNLGLRLLSGS--VLRLCSVIDSAEVLNQ 345
            +          GL + +GS  V    S I + E LNQ
Sbjct: 947 PLYEDLRDLNGCGLLIRNGSLDVSGALSEIGAFEKLNQ 984


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.345    0.155    0.589 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,361,832
Number of Sequences: 164201
Number of extensions: 2749444
Number of successful extensions: 8730
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8728
Number of HSP's gapped (non-prelim): 3
length of query: 568
length of database: 59,974,054
effective HSP length: 116
effective length of query: 452
effective length of database: 40,926,738
effective search space: 18498885576
effective search space used: 18498885576
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 68 (30.8 bits)