BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0014.18
         (181 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CCMF_PSEFL (P52225) Cytochrome c-type biogenesis protein cycK          29  6.8

>CCMF_PSEFL (P52225) Cytochrome c-type biogenesis protein cycK
          Length = 660

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 22/135 (16%)

Query: 18  PAIRWWPLDAVWVKLNSDGAYISSADMAACRGIIRDRFSA--FVIAYARRLGS----YST 71
           P +  WP D +W+ L     +   A +    G +   F    F +AY     +    +  
Sbjct: 29  PLLGAWPGDRLWMSLAQPARWGQFAFLLFAFGCLTYAFMTDDFSVAYVANNSNSALPWYY 88

Query: 72  LQAELWGILCGARLLQ--------------ERDY*RVLIETNLSILGVVLVLIPVLLLLT 117
           L + +WG   G+ LL                R   +V++   L+++G++ +   + L++T
Sbjct: 89  LFSAVWGAHEGSLLLWALILGGWTFAVSVFSRQLPQVMLARVLAVMGMISIGFLLFLIMT 148

Query: 118 K*SRLFSRVSPRLGA 132
             S  FSR+ P++ A
Sbjct: 149 --SNPFSRMLPQIPA 161


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.336    0.145    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,768,715
Number of Sequences: 164201
Number of extensions: 621276
Number of successful extensions: 1730
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1730
Number of HSP's gapped (non-prelim): 1
length of query: 181
length of database: 59,974,054
effective HSP length: 103
effective length of query: 78
effective length of database: 43,061,351
effective search space: 3358785378
effective search space used: 3358785378
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 62 (28.5 bits)