BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0012a.8
(719 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SNF5_YEAST (P18480) Transcription regulatory protein SNF5 (SWI/S... 45 7e-04
PR16_HUMAN (Q92620) Pre-mRNA splicing factor ATP-dependent RNA h... 44 0.002
ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (X-li... 43 0.003
FOR3_SCHPO (O94532) Formin 3 42 0.007
ZAP3_HUMAN (P49750) Nuclear protein ZAP3 (ZAP113) 41 0.010
BCHD_HELMO (Q9ZGE6) Magnesium-chelatase 67 kDa subunit (EC 6.6.1... 40 0.016
SOX9_MOUSE (Q04887) Transcription factor SOX-9 40 0.028
OSA_DROME (Q8IN94) Trithorax group protein OSA (Eyelid protein) 39 0.037
GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor (H... 39 0.037
MYPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein... 39 0.048
KCN3_PIG (P58392) Small conductance calcium-activated potassium ... 39 0.063
MYS_AEQIR (P24733) Myosin heavy chain, striated muscle 38 0.082
AGLU_BETVU (O04931) Alpha-glucosidase precursor (EC 3.2.1.20) (M... 38 0.082
MYSS_CYPCA (Q90339) Myosin heavy chain, fast skeletal muscle 38 0.11
FXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription facto... 38 0.11
EP40_MOUSE (Q8CHI8) E1A binding protein p400 (EC 3.6.1.-) (p400 ... 38 0.11
NCR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Sil... 37 0.14
HXD3_CHICK (O93353) Homeobox protein Hox-D3 37 0.14
H15_DROME (Q94890) T-box protein H15 37 0.14
CD2_HORSE (P37998) T-cell surface antigen CD2 precursor 37 0.14
>SNF5_YEAST (P18480) Transcription regulatory protein SNF5 (SWI/SNF
complex component SNF5) (Transcription factor TYE4)
Length = 905
Score = 45.1 bits (105), Expect = 7e-04
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 4 RRRKQHHSPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPG 63
R R Q +Q+ SPP + H+ P ++ + + S +PPPPP+P + +
Sbjct: 57 RSRLQQQQQQQQQTSPPPQTHQSPPPPPQQSQPIANQSATSTPPPPPAPHNLHPQIGQVP 116
Query: 64 NSPAP-------EQQPAVTQEQWRHLMR----SIGNIQQRNEHLQAQLDFYRREQRDDGS 112
+PAP Q P TQ+Q + +R + N Q N AQ R+ ++ G
Sbjct: 117 LAPAPINLPPQIAQLPLATQQQVLNKLRQQAIAKNNPQVVNAITVAQQQVQRQIEQQKGQ 176
Query: 113 READSVAE 120
+ A + E
Sbjct: 177 QTAQTQLE 184
>PR16_HUMAN (Q92620) Pre-mRNA splicing factor ATP-dependent RNA
helicase PRP16 (EC 3.6.1.-) (ATP-dependent RNA helicase
DHX38) (DEAH-box protein 38)
Length = 1227
Score = 43.5 bits (101), Expect = 0.002
Identities = 44/216 (20%), Positives = 95/216 (43%), Gaps = 37/216 (17%)
Query: 285 RARASTYILDEEDDAFKRKRAKLEKGDTSPKRVKKDRSGED-KGDGKQQRSGEGKSVFKL 343
+++ S+Y D E+ +K A+ E GD + + ++KDR + + G + ++
Sbjct: 73 KSKVSSY-KDWEESKDDQKDAEEEGGDQAGQNIRKDRHYRSARVETPSHPGGVSEEFWER 131
Query: 344 TKEQLYPRRD-----DYEQRRPWQSKSHRQRE--------ETDMVMNTDVSDMLRGASDA 390
++++ RR+ ++ + W+ + R R+ E D ++ S+ G+ +
Sbjct: 132 SRQRERERREHGVYASSKEEKDWKKEKSRDRDYDRKRDRDERDRSRHSSRSERDGGSERS 191
Query: 391 NLVDEPEAPKYHPRDANPKKWCEFHRSAGHDTDDCWTLHREIDKLIRAGYQGNRQGQWRN 450
+ +EPE+P++ P+DA RS + D +GY +R+ QW +
Sbjct: 192 SRRNEPESPRHRPKDAATPS-----RSTWEEED--------------SGYGSSRRSQWES 232
Query: 451 SGDQNKAHKREEERADTKGKKKQESAAIATKGADDT 486
R+ ER+ + ++ ++ K +DDT
Sbjct: 233 PSP--TPSYRDSERSHRLSTRDRD-RSVRGKYSDDT 265
>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog
(X-linked nuclear protein-1)
Length = 1359
Score = 42.7 bits (99), Expect = 0.003
Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 31/231 (13%)
Query: 270 NSKLTRKPARSMGEIRARASTYILDEEDDAFKRK-RAKLEKGDTSPKRVKKDRSGEDKGD 328
+SK +RK A+S E DEE+D K K + K+++ + K+ S + D
Sbjct: 78 SSKKSRKRAKSESESDES------DEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSSEDED 131
Query: 329 GKQQRSGEGKSVFKLTKEQLYPRRDDYEQRRPWQSKSHRQREETDMVMNTDVSDMLRGAS 388
++R + K K TK+Q + + KS + +E++ + + A
Sbjct: 132 SDEEREQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKS----------VKKRAE 181
Query: 389 DANLVDEPEAPKYHPRDANPKKWCEFHRSAGHDTDDCWTLHREIDKLIRAGYQGNRQGQW 448
+ DE E P + KK S D + ++ K+++ + +
Sbjct: 182 TSEESDEDEKPSKKSKKGLKKKAKSESESESEDEKEVKKSKKKSKKVVKKESESEDEAPE 241
Query: 449 RN--------------SGDQNKAHKREEERADTKGKKKQESAAIATKGADD 485
+ S + K+ + EEE+ + KK++ A+ +D+
Sbjct: 242 KKKTEKRKRSKTSSEESSESEKSDEEEEEKESSPKPKKKKPLAVKKLSSDE 292
Score = 32.3 bits (72), Expect = 4.5
Identities = 35/218 (16%), Positives = 81/218 (37%), Gaps = 21/218 (9%)
Query: 275 RKPARSMGEIRARASTYILDEEDDAFKRKRAKLEKGDTSPKRVKKDRSGEDKGDGKQQRS 334
++PA+ +A +S D+E+++ ++ K K S + ED+ K ++
Sbjct: 53 KRPAKKR---KASSSEEDDDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKK 109
Query: 335 GEGKSVFKLTKEQLYPRRDDYEQRRPWQSKSHRQREETDMVMNTDVSD------------ 382
+ K K K++ +D + + KS ++ ++T +++ S+
Sbjct: 110 VDQKKKEKSKKKRTTSSSEDEDSDEEREQKSKKKSKKTKKQTSSESSEESEEERKVKKSK 169
Query: 383 ------MLRGASDANLVDEPEAPKYHPRDANPKKWCEFHRSAGHDTDDCWTLHREIDKLI 436
+ + A + DE E P + KK S D + ++ K++
Sbjct: 170 KNKEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSESESESEDEKEVKKSKKKSKKVV 229
Query: 437 RAGYQGNRQGQWRNSGDQNKAHKREEERADTKGKKKQE 474
+ + + + ++ K K E + K +E
Sbjct: 230 KKESESEDEAPEKKKTEKRKRSKTSSEESSESEKSDEE 267
>FOR3_SCHPO (O94532) Formin 3
Length = 1461
Score = 41.6 bits (96), Expect = 0.007
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 19 PPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPE---QQPAVT 75
PP P P GV PP PPPPP+ S GSR ++P PE + ++T
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDETSLT 811
Query: 76 QEQ 78
+EQ
Sbjct: 812 EEQ 814
>ZAP3_HUMAN (P49750) Nuclear protein ZAP3 (ZAP113)
Length = 1822
Score = 41.2 bits (95), Expect = 0.010
Identities = 48/215 (22%), Positives = 75/215 (34%), Gaps = 38/215 (17%)
Query: 265 LPGGLNSKLTRKPARSMGEIRARASTYILDEEDDAFKRKRAKLEKGDTSPKRVKKDRSGE 324
+PGGL R A S R R ++ R+ E+ P+R G
Sbjct: 898 VPGGLQGSQDRGAAGS----RERGPPRRAGSQERGPLRRAGSRER--IPPRRAGSRERGP 951
Query: 325 DKGDGKQQRSGEGKSVFKLTK-----------EQLYPRRDDYEQRRPWQSKSHRQREETD 373
+G G ++R G G+S F + E++YP D R PW R EE
Sbjct: 952 PRGPGSRER-GLGRSDFGRDRGPFRPEPGDGGEKMYPYHRDEPPRAPWNHGEERGHEEFP 1010
Query: 374 MVMNTDVSDMLRGASDANLVDEPEAPKYHPRDANPKKWCEFHRSAGHDTDDCWTLHREID 433
+ D + +D+ + +Y W E R DT + +
Sbjct: 1011 L-------DGRNAPMERERLDDWDRERY---------WRECERDYQDDTLELYNREDRFS 1054
Query: 434 KLIRAGYQGNRQG----QWRNSGDQNKAHKREEER 464
+ G+R+G W D ++ + RE ER
Sbjct: 1055 APPSRSHDGDRRGPWWDDWERDQDMDEDYNREMER 1089
Score = 33.5 bits (75), Expect = 2.0
Identities = 25/79 (31%), Positives = 38/79 (47%), Gaps = 9/79 (11%)
Query: 2 ETRRRKQHHSPMRQRISPPRRPHRVDLDSPVRTAGVQSPSH-PPS----PPPPPSPSQ-- 54
+ +++ +H QR PP ++L+SP + V S+ PPS PPP P PS
Sbjct: 118 QKQQQYKHQMLHHQRDGPPGLVP-MELESPPESPPVPPGSYMPPSQSYMPPPQPPPSYYP 176
Query: 55 -VGSREHSPGNSPAPEQQP 72
S+ + P P+P Q P
Sbjct: 177 PTSSQPYLPPAQPSPSQSP 195
>BCHD_HELMO (Q9ZGE6) Magnesium-chelatase 67 kDa subunit (EC 6.6.1.1)
(Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit
D)
Length = 666
Score = 40.4 bits (93), Expect = 0.016
Identities = 19/53 (35%), Positives = 25/53 (46%)
Query: 25 RVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQPAVTQE 77
R +D P +Q P PP PPPPP P + E P +P EQ + +E
Sbjct: 322 RQTVDLPDEEEQMQPPPPPPPPPPPPEPDKPDDPETPPDEAPKDEQTLQLPEE 374
>SOX9_MOUSE (Q04887) Transcription factor SOX-9
Length = 507
Score = 39.7 bits (91), Expect = 0.028
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 34 TAGVQSPSHPPSPPPPP-SPSQVGSREHSPGNSPAPEQQPAVTQEQWRHLMRSIGNIQQR 92
TAG S +PPPPP P Q +P AP QQP Q+Q H + ++ + +
Sbjct: 330 TAGHVWMSKQQAPPPPPQQPPQAPQAPQAPPQQQAPPQQPQAPQQQQAHTLTTLSSEPGQ 389
Query: 93 NEHLQAQLDFYRREQRDDGSREADSVAEFRPFS 125
++ + + + + + + PF+
Sbjct: 390 SQRTHIKTEQLSPSHYSEQQQHSPQQISYSPFN 422
>OSA_DROME (Q8IN94) Trithorax group protein OSA (Eyelid protein)
Length = 2716
Score = 39.3 bits (90), Expect = 0.037
Identities = 22/78 (28%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 11 SPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSP---- 66
+P R PP PH + P A +PP PPP P Q + P
Sbjct: 1530 APPRGAAPPPGAPHGPPIQQPAGVAQWDQHRYPPQQGPPPPPQQQQQPQQQQQQPPYQQV 1589
Query: 67 --APEQQPAVTQEQWRHL 82
P QQP QW +
Sbjct: 1590 AGPPGQQPPQAPPQWAQM 1607
Score = 33.9 bits (76), Expect = 1.5
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 39 SPSHPP----SPPPPPSPSQVGSR-EHSPGNSPAPEQQPA 73
SP H P PPPPP S G SPG++P+P QP+
Sbjct: 429 SPHHVPPLQQQPPPPPHVSAGGPPPSSSPGHAPSPSPQPS 468
Score = 33.1 bits (74), Expect = 2.6
Identities = 22/63 (34%), Positives = 28/63 (43%), Gaps = 16/63 (25%)
Query: 9 HHSPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAP 68
HH P Q+ PP P V P ++ SP H PSP P PS + SP+P
Sbjct: 431 HHVPPLQQQPPP--PPHVSAGGPPPSS---SPGHAPSPSPQPSQA-----------SPSP 474
Query: 69 EQQ 71
Q+
Sbjct: 475 HQE 477
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor
(Hydroxyproline-rich glycoprotein 1)
Length = 555
Score = 39.3 bits (90), Expect = 0.037
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 18 SPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQPAVTQE 77
SPP P +P + SPS PSP P PSPS S P SP P P +
Sbjct: 333 SPPPSP------APPTPSPSPSPSPSPSPSPSPSPSPSPSPSPIPSPSPKPSPSPVAVKL 386
Query: 78 QW 79
W
Sbjct: 387 VW 388
Score = 37.7 bits (86), Expect = 0.11
Identities = 21/63 (33%), Positives = 24/63 (37%)
Query: 11 SPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQ 70
SP SPP P V + SP P PPPP P R P N+P P
Sbjct: 230 SPAPPSPSPPAPPSPVPPSPAPPSPAPPSPKPPAPPPPPSPPPPPPPRPPFPANTPMPPS 289
Query: 71 QPA 73
P+
Sbjct: 290 PPS 292
Score = 37.7 bits (86), Expect = 0.11
Identities = 21/54 (38%), Positives = 23/54 (41%)
Query: 19 PPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQP 72
PP SP + +PS PSP P PSPS S SP SP P P
Sbjct: 322 PPSPAPPSPAPSPPPSPAPPTPSPSPSPSPSPSPSPSPSPSPSPSPSPIPSPSP 375
Score = 37.0 bits (84), Expect = 0.18
Identities = 20/54 (37%), Positives = 23/54 (42%)
Query: 20 PRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQPA 73
P P P SPS PSP P PSPS S SP P+P +P+
Sbjct: 325 PAPPSPAPSPPPSPAPPTPSPSPSPSPSPSPSPSPSPSPSPSPSPIPSPSPKPS 378
Score = 34.7 bits (78), Expect = 0.90
Identities = 21/63 (33%), Positives = 24/63 (37%), Gaps = 8/63 (12%)
Query: 19 PPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPG--------NSPAPEQ 70
PPR P + P PP+PP PPSPS SP SPAP
Sbjct: 275 PPRPPFPANTPMPPSPPSPPPSPAPPTPPTPPSPSPPSPVPPSPAPVPPSPAPPSPAPSP 334
Query: 71 QPA 73
P+
Sbjct: 335 PPS 337
Score = 33.9 bits (76), Expect = 1.5
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 19/82 (23%)
Query: 11 SPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPP-------------------PPS 51
SP PP P P A P PPSPPP PPS
Sbjct: 258 SPKPPAPPPPPSPPPPPPPRPPFPANTPMPPSPPSPPPSPAPPTPPTPPSPSPPSPVPPS 317
Query: 52 PSQVGSREHSPGNSPAPEQQPA 73
P+ V P +P+P PA
Sbjct: 318 PAPVPPSPAPPSPAPSPPPSPA 339
Score = 32.3 bits (72), Expect = 4.5
Identities = 18/54 (33%), Positives = 20/54 (36%)
Query: 19 PPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQP 72
PP P +P SPS P PP P+P SP SP P P
Sbjct: 287 PPSPPSPPPSPAPPTPPTPPSPSPPSPVPPSPAPVPPSPAPPSPAPSPPPSPAP 340
Score = 31.6 bits (70), Expect = 7.6
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 30 SPVRTAGVQSPSHPP-SPPP---PPSPSQVGSREHSPGNSPAPEQQPA 73
SP +P P SPPP PP+PS S SP SP+P P+
Sbjct: 317 SPAPVPPSPAPPSPAPSPPPSPAPPTPSPSPSPSPSPSPSPSPSPSPS 364
>MYPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein)
(86 kDa protein)
Length = 537
Score = 38.9 bits (89), Expect = 0.048
Identities = 21/73 (28%), Positives = 34/73 (45%), Gaps = 5/73 (6%)
Query: 7 KQHHSPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPS-QVGSREHSPGNS 65
K+ H+P +PP H D + P A H P+P +P+ + G +P +
Sbjct: 65 KEEHAPAPAAETPPAPEHPPDAEQPAAPAA----EHAPTPTHEAAPAHEEGPPPAAPAEA 120
Query: 66 PAPEQQPAVTQEQ 78
PAPE +P +E+
Sbjct: 121 PAPEPEPEKPKEE 133
>KCN3_PIG (P58392) Small conductance calcium-activated potassium
channel protein 3 (SK3)
Length = 724
Score = 38.5 bits (88), Expect = 0.063
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 38 QSPSHPPSPPPPPSPSQVGSREHSPGNSPAP---EQQPAVTQEQWRHLMRSIGNIQQRNE 94
Q PP PPPPP+P + P P P +QQ Q+Q H + + +Q +
Sbjct: 30 QQQQQPPPPPPPPAPPAAPQQPPGPPLQPQPLQLQQQQQQQQQQPPHPLSQLAQLQSQPV 89
Query: 95 H 95
H
Sbjct: 90 H 90
>MYS_AEQIR (P24733) Myosin heavy chain, striated muscle
Length = 1938
Score = 38.1 bits (87), Expect = 0.082
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 30/144 (20%)
Query: 214 KNQPVTINDLYNIRQQEGESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKL 273
K+ + DL ++++ E+++ A S+ + K+EDE+ L S+L
Sbjct: 1057 KSTQENVEDLERVKRELEENVRRKEAEISSLNSKLEDEQ---------------NLVSQL 1101
Query: 274 TRKPARSMGEIRARASTYILDEEDDAFKRKRAKLEKGDTSPKRVKKDRSGEDKGDGKQQR 333
RK + E++AR L+EE +A + RAK+EK +R + +R E+ G+ +
Sbjct: 1102 QRK----IKELQARIEE--LEEELEAERNARAKVEK-----QRAELNRELEELGERLDEA 1150
Query: 334 SGEGKSVFKLTK----EQLYPRRD 353
G + +L K E L RRD
Sbjct: 1151 GGATSAQIELNKKREAELLKIRRD 1174
>AGLU_BETVU (O04931) Alpha-glucosidase precursor (EC 3.2.1.20)
(Maltase)
Length = 913
Score = 38.1 bits (87), Expect = 0.082
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 44 PSPPPPPSPSQVGSREHSPGNSPAPEQQPAVT 75
P PPPPPSP + S +H P P P+ QP T
Sbjct: 112 PRPPPPPSPPPLSSLQHLP--KPIPQNQPTTT 141
>MYSS_CYPCA (Q90339) Myosin heavy chain, fast skeletal muscle
Length = 1935
Score = 37.7 bits (86), Expect = 0.11
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 30/164 (18%)
Query: 219 TINDLYNIRQQEGESLKEYMARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTRKPA 278
+I DL N +QQ E +K+ S K+EDE+ L ++L +K
Sbjct: 1066 SIMDLENEKQQSDEKIKKKDFEISQLLSKIEDEQ---------------SLGAQLQKK-- 1108
Query: 279 RSMGEIRARASTYILDEEDDAFKRKRAKLEKGDTSPKRVKKDRSGEDKGDGKQQRSGEGK 338
+ E++AR L+EE +A + RAK+EK +R R E+ + ++ G
Sbjct: 1109 --IKELQARIEE--LEEEIEAERAARAKVEK-----QRADLSRELEEISERLEEAGGATA 1159
Query: 339 SVFKLTKEQLYPRRDDYEQRRPWQSKSHRQREETDMVMNTDVSD 382
+ ++ K+ R ++++ R +S Q E T + + +D
Sbjct: 1160 AQIEMNKK----REAEFQKMRRDLEESTLQHEATAAALRKEQAD 1199
>FXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription factor
FKH-4)
Length = 428
Score = 37.7 bits (86), Expect = 0.11
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 42 HPPSPPPPPSPSQVGSREHSPGNSPAPEQQPAVTQEQ 78
HPP PPPPP P V P +P P P+ +Q
Sbjct: 162 HPPQPPPPPPPHMVPYFHQQPAPAPQPPHLPSQPAQQ 198
>EP40_MOUSE (Q8CHI8) E1A binding protein p400 (EC 3.6.1.-) (p400 kDa
SWI2/SNF2-related protein) (Domino homolog) (mDomino)
Length = 3072
Score = 37.7 bits (86), Expect = 0.11
Identities = 19/68 (27%), Positives = 28/68 (40%), Gaps = 3/68 (4%)
Query: 5 RRKQHHSPMRQRISPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGN 64
++K P+ Q PP + + + Q P PP PPPP P + +P
Sbjct: 2448 QQKAQQPPVTQ---PPPQQQQQQQQQQQQQQQQQQPPPPPQQPPPPVPQPQAASSQTPAG 2504
Query: 65 SPAPEQQP 72
PA + QP
Sbjct: 2505 QPAVQPQP 2512
>NCR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2)
(Silencing mediator of retinoic acid and thyroid hormone
receptor) (SMRT) (SMRTe) (Thyroid-,
retinoic-acid-receptor-associated corepressor) (T3
receptor-associating factor) (TRAC) (CTG repeat pr
Length = 2517
Score = 37.4 bits (85), Expect = 0.14
Identities = 19/67 (28%), Positives = 31/67 (45%), Gaps = 7/67 (10%)
Query: 18 SPPRRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREH-------SPGNSPAPEQ 70
+PPRR R ++ + +P+ PP+PP P +P V +E +P EQ
Sbjct: 784 TPPRRTSRAPIEPTPASEATGAPTPPPAPPSPSAPPPVVPKEEKEEETAAAPPVEEGEEQ 843
Query: 71 QPAVTQE 77
+P +E
Sbjct: 844 KPPAAEE 850
>HXD3_CHICK (O93353) Homeobox protein Hox-D3
Length = 413
Score = 37.4 bits (85), Expect = 0.14
Identities = 23/75 (30%), Positives = 34/75 (44%), Gaps = 12/75 (16%)
Query: 31 PVRTAGVQSPSHPPSPPPPP----------SPSQVGSREHSPGNSPAPE--QQPAVTQEQ 78
P++ G+ P PP PPP P SPSQ S +P NS P V+++
Sbjct: 78 PLQPPGLTDPQAPPQPPPAPQAQPPPPSSASPSQNASSNPAPANSTKSPALNSPTVSKQI 137
Query: 79 WRHLMRSIGNIQQRN 93
+ + S N +Q+N
Sbjct: 138 FPWMKESRQNTKQKN 152
>H15_DROME (Q94890) T-box protein H15
Length = 544
Score = 37.4 bits (85), Expect = 0.14
Identities = 22/71 (30%), Positives = 33/71 (45%), Gaps = 6/71 (8%)
Query: 6 RKQHHSPMRQRISPPRRPHRVDLDSPVRT--AGVQSPSHPPSPPPPPSPSQVGSREHSPG 63
++QH + R ++ H+ + P R A V + + P PPPPPS S SP
Sbjct: 83 QQQHQQQQQLR----QQQHQQQIKQPARAFAAAVGAAATPSPPPPPPSQSPEELERLSPE 138
Query: 64 NSPAPEQQPAV 74
SPA + P +
Sbjct: 139 ESPAQQPTPKI 149
>CD2_HORSE (P37998) T-cell surface antigen CD2 precursor
Length = 347
Score = 37.4 bits (85), Expect = 0.14
Identities = 20/60 (33%), Positives = 27/60 (44%), Gaps = 5/60 (8%)
Query: 21 RRPHRVDLDSPVRTAGVQSPSHPPSPPPPPSPSQVGSREHSPGNSPAPEQQPAVTQEQWR 80
R+PH++ +P+ A Q P PPP P G R PG+ P P Q+Q R
Sbjct: 259 RKPHQIPGSTPLNPAASQPP-----PPPSHRPQAPGHRPQVPGHRPLPPGHRVQHQQQKR 313
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,207,117
Number of Sequences: 164201
Number of extensions: 4159288
Number of successful extensions: 29904
Number of sequences better than 10.0: 406
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 306
Number of HSP's that attempted gapping in prelim test: 24900
Number of HSP's gapped (non-prelim): 2409
length of query: 719
length of database: 59,974,054
effective HSP length: 118
effective length of query: 601
effective length of database: 40,598,336
effective search space: 24399599936
effective search space used: 24399599936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)
Lotus: description of TM0012a.8