BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0011b.6
         (189 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SYM_METKA (Q8TX28) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth...    32  1.1
RADA_SYNY3 (P74391) DNA repair protein radA homolog (DNA repair ...    29  5.7
GBB_YEAST (P18851) Guanine nucleotide-binding protein beta subunit     29  5.7
NU1M_ASTPE (P23650) NADH-ubiquinone oxidoreductase chain 1 (EC 1...    28  9.7

>SYM_METKA (Q8TX28) Methionyl-tRNA synthetase (EC 6.1.1.10)
           (Methionine--tRNA ligase) (MetRS)
          Length = 668

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 22/62 (35%), Positives = 31/62 (49%), Gaps = 9/62 (14%)

Query: 13  DPGCAICGN--EVETMEHLFL---EFPMFLGVWFASSLSLRVNLFATVEDFVSEMVREGM 67
           +P C ICG+  EV    HLF    EF   L  W  S+ +L  N    V ++  + VREG+
Sbjct: 173 EPRCVICGSKPEVRRTMHLFFKLSEFEEDLKKWLESNDNLPKN----VRNYAIQWVREGL 228

Query: 68  PE 69
            +
Sbjct: 229 KD 230


>RADA_SYNY3 (P74391) DNA repair protein radA homolog (DNA repair
           protein sms homolog)
          Length = 505

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 30/74 (40%), Positives = 37/74 (49%), Gaps = 5/74 (6%)

Query: 17  AICGNEVETMEHLFLEFPMFLGVWFASSLSLRV--NLF-ATVEDFVSEMVREGMPEVLAA 73
           AI G +V  +EHL      F G  FAS   LR   N F AT E  + EMV+ G+ EVL  
Sbjct: 249 AIAGPKV--LEHLVDTVLYFQGDRFASHRLLRSVKNRFGATQEIGIFEMVQSGLQEVLNP 306

Query: 74  VQTMLYAIWESQNG 87
            Q  L +  E  +G
Sbjct: 307 SQLFLGSREEFMSG 320


>GBB_YEAST (P18851) Guanine nucleotide-binding protein beta subunit
          Length = 423

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 70  VLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGS 109
           +L+A Q     IW+S +GL    +  D  WVL+ A++  S
Sbjct: 107 ILSASQDGFMLIWDSASGLKQNAIPLDSQWVLSCAISPSS 146


>NU1M_ASTPE (P23650) NADH-ubiquinone oxidoreductase chain 1 (EC
           1.6.5.3)
          Length = 326

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 25/77 (32%), Positives = 34/77 (43%), Gaps = 13/77 (16%)

Query: 107 LGSGWVRVHESPHAGRELPSRWKRPATRAVKVNLDARVHDGS-MAGLVLVARDENEEVLE 165
           LGSGW         G          A RAV   +   +  G  + G+VL A   N EV+E
Sbjct: 121 LGSGWSSNSNYSFLG----------AVRAVAQTVSYEISLGLILLGVVLFAGGFNVEVIE 170

Query: 166 ATSSYPWPILS--PLLA 180
           ++ S+ W + S  PL A
Sbjct: 171 SSQSWSWLMFSCFPLFA 187


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,504,257
Number of Sequences: 164201
Number of extensions: 806227
Number of successful extensions: 1820
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1818
Number of HSP's gapped (non-prelim): 5
length of query: 189
length of database: 59,974,054
effective HSP length: 104
effective length of query: 85
effective length of database: 42,897,150
effective search space: 3646257750
effective search space used: 3646257750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)