BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.7
(564 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SR5C_ARATH (P37107) Signal recognition particle 54 kDa protein, ... 846 0.0
SR54_SYNP7 (Q55311) Signal sequence binding protein 491 e-138
SR54_SYNY3 (P74214) Signal recognition particle protein (Fifty-f... 484 e-136
SR54_BACSU (P37105) Signal recognition particle protein (Fifty-f... 405 e-112
SR54_STRMU (Q54431) Signal recognition particle protein (Fifty-f... 392 e-108
SR54_MYCTU (P66844) Signal recognition particle protein (Fifty-f... 382 e-105
SR54_MYCBO (P66845) Signal recognition particle protein (Fifty-f... 382 e-105
SR54_MYCLE (O33013) Signal recognition particle protein (Fifty-f... 380 e-105
SR54_ECOLI (P07019) Signal recognition particle protein (Fifty-f... 377 e-104
SR54_AQUAE (O67615) Signal recognition particle protein (Fifty-f... 356 1e-97
SR54_RICCN (Q92J55) Signal recognition particle protein (Fifty-f... 353 9e-97
SR54_HAEIN (P44518) Signal recognition particle protein (Fifty-f... 346 1e-94
SR54_RICPR (Q9ZDZ0) Signal recognition particle protein (Fifty-f... 345 2e-94
SR54_THEAQ (O07347) Signal recognition particle protein (Fifty-f... 341 3e-93
SR54_MYCMY (Q01442) Signal recognition particle protein (Fifty-f... 315 2e-85
SR54_METJA (Q57565) Signal recognition 54 kDa protein (SRP54) 310 5e-84
SR54_BUCAI (P57473) Signal recognition particle protein (Fifty-f... 308 3e-83
SR54_HELPJ (Q9ZK62) Signal recognition particle protein (Fifty-f... 306 7e-83
SR54_HELPY (P56005) Signal recognition particle protein (Fifty-f... 303 6e-82
SR54_BUCAP (Q8K9F7) Signal recognition particle protein (Fifty-f... 301 3e-81
>SR5C_ARATH (P37107) Signal recognition particle 54 kDa protein,
chloroplast precursor (SRP54) (54 chloroplast protein)
(54CP) (FFC)
Length = 564
Score = 846 bits (2186), Expect = 0.0
Identities = 445/557 (79%), Positives = 496/557 (88%), Gaps = 11/557 (1%)
Query: 17 SSHNRTVCSSSPSPN---SLKLSSPWTNASI------SSRNSFTKEIWGWVQAKSVAVRR 67
SS NR C+ S + N SS +T +I SSRN T+EIW WV++K+V V
Sbjct: 7 SSVNRVPCTLSCTGNRRIKAAFSSAFTGGTINSASLSSSRNLSTREIWSWVKSKTV-VGH 65
Query: 68 RRDMPGVVRAEMFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVR 127
R VRAEMFGQLT GLEAAW+KLKGEEVLTK+NI EPMRDIRRALLEADVSLPVVR
Sbjct: 66 GRYRRSQVRAEMFGQLTGGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVR 125
Query: 128 RFVQSVSDQAVGVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQ 187
RFVQSVSDQAVG+GVIRGVKPDQQLVKIVH+ELVKLMGGEVSEL FAKSG TVILLAGLQ
Sbjct: 126 RFVQSVSDQAVGMGVIRGVKPDQQLVKIVHDELVKLMGGEVSELQFAKSGPTVILLAGLQ 185
Query: 188 GVGKTTVCAKLSNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSE 247
GVGKTTVCAKL+ YLKKQGKSCML+AGD+YRPAAIDQL ILG+QVGVPVYTAGTDVKP++
Sbjct: 186 GVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPAD 245
Query: 248 IARQGLEEAKKKKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAA 307
IA+QGL+EAKK +DVVI+DTAGRLQIDK MMDELK+VKK LNPTEVLLVVDAMTGQEAA
Sbjct: 246 IAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAA 305
Query: 308 ALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRM 367
ALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM+DLEPFYPDRM
Sbjct: 306 ALVTTFNVEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRM 365
Query: 368 AGRILGMGDVLSFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVM 427
AGRILGMGDVLSFVEKA EVM+QEDAE LQ+KIMSAKFDFNDFLKQTRAVA+MGS++RV+
Sbjct: 366 AGRILGMGDVLSFVEKATEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVAKMGSMTRVL 425
Query: 428 GMIPGMSKVTPAQIREAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTE 487
GMIPGM KV+PAQIREAEKNL MEAMIE MTPEERE+PELLAESP RRKR+A++SGKTE
Sbjct: 426 GMIPGMGKVSPAQIREAEKNLLVMEAMIEVMTPEERERPELLAESPERRKRIAKDSGKTE 485
Query: 488 QQVSQVVAQLFQMRVRMKNLMGVMQGGSMPTLSNLEEALKPEEKAPPGTARRRKRSEQRS 547
QQVS +VAQ+FQMRV+MKNLMGVM+GGS+P LS LE+ALK E+KAPPGTARR+++++ R
Sbjct: 486 QQVSALVAQIFQMRVKMKNLMGVMEGGSIPALSGLEDALKAEQKAPPGTARRKRKADSRK 545
Query: 548 LFADSA-ARPTPRGFGS 563
F +SA ++P PRGFGS
Sbjct: 546 KFVESASSKPGPRGFGS 562
>SR54_SYNP7 (Q55311) Signal sequence binding protein
Length = 485
Score = 491 bits (1265), Expect = e-138
Identities = 256/483 (53%), Positives = 351/483 (72%), Gaps = 12/483 (2%)
Query: 79 MFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 138
MF L LE AW KL+G++ +++ N+ E ++++RRALLEADV+L VV+ F+ V ++AV
Sbjct: 1 MFDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAV 60
Query: 139 GVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKL 198
G VI G++PDQQ +K+V++ELV++MG LA A TVIL+AGLQG GKTT AKL
Sbjct: 61 GTQVISGIRPDQQFIKVVYDELVQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKL 120
Query: 199 SNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAKK 258
+ +L+K+G+S +LVA D+YRPAAIDQL LGKQ+ VPV+ G+D P EIARQG+E+A++
Sbjct: 121 ALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEKARQ 180
Query: 259 KKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 318
+ ID VIVDTAGRLQID MM+EL +VK+++ P EVLLVVD+M GQEAA+L +F+ IG
Sbjct: 181 EGIDTVIVDTAGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERIG 240
Query: 319 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVL 378
ITGAILTKLDGDSRGGAALS++ VSG+PIK VG GE+++ L+PF+P+RMA RILGMGDVL
Sbjct: 241 ITGAILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGDVL 300
Query: 379 SFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGM-SKVT 437
+ VEKAQE + D EK+QEKI++AKFDF DFLKQ R + MGS++ + +IPG+ K+
Sbjct: 301 TLVEKAQEEIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKIN 360
Query: 438 PAQIREAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQVVAQL 497
Q+R+ E+ LK +EAMI +MTP+ER P+LL+ SP RR R+A+ G+TE ++ Q++ Q
Sbjct: 361 DEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTEAEIRQIIQQF 420
Query: 498 FQMRVRMKNL-------MGVMQ----GGSMPTLSNLEEALKPEEKAPPGTARRRKRSEQR 546
QMR M+ + MG M GG MP A +P + +++K S+++
Sbjct: 421 QQMRTMMQQMSQGGFPGMGGMGMPGFGGGMPGFGGGAPAPQPGFRGYGPPKKQKKGSKKK 480
Query: 547 SLF 549
F
Sbjct: 481 KGF 483
>SR54_SYNY3 (P74214) Signal recognition particle protein (Fifty-four
homolog)
Length = 482
Score = 484 bits (1246), Expect = e-136
Identities = 248/437 (56%), Positives = 327/437 (74%), Gaps = 1/437 (0%)
Query: 79 MFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 138
MF L LE AW KL+G++ +++ NI E ++++RRALL ADV+L VV+ F++ V +A+
Sbjct: 1 MFDALADRLEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQVVKGFIKDVEQKAL 60
Query: 139 GVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKL 198
G VI GV P QQ +KIV++ELV LMG LA A+ TVIL+AGLQG GKTT AKL
Sbjct: 61 GADVISGVNPGQQFIKIVYDELVNLMGESNVPLAQAEQAPTVILMAGLQGTGKTTATAKL 120
Query: 199 SNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAKK 258
+ YL+KQ +S ++VA D+YRPAAIDQL LG+Q+ VPV+ G+D P EIARQG+E+AK+
Sbjct: 121 ALYLRKQKRSALMVATDVYRPAAIDQLKTLGQQIDVPVFDLGSDANPVEIARQGVEKAKE 180
Query: 259 KKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 318
+D V++DTAGRLQID MM EL E+K+ + P + LLVVDAMTGQEAA L TF+ +IG
Sbjct: 181 LGVDTVLIDTAGRLQIDPQMMAELAEIKQVVKPDDTLLVVDAMTGQEAANLTHTFHEQIG 240
Query: 319 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVL 378
ITGAILTKLDGD+RGGAALSV+++SG+PIK VG GE+++ L+PFYPDR+A RIL MGDVL
Sbjct: 241 ITGAILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRLASRILNMGDVL 300
Query: 379 SFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKVTP 438
+ VEKAQE + D EKLQ KI+ A FDF+DF+KQ R + MGS+ ++ MIPGM+K++
Sbjct: 301 TLVEKAQEAIDVGDVEKLQNKILEATFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSS 360
Query: 439 AQIREAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQVVAQLF 498
I + EK LK EAMI +MT EER+ P+LLA+SP RR+R+AQ SG +E VS+++
Sbjct: 361 GDIEKGEKELKRTEAMISSMTTEERKNPDLLAKSPSRRRRIAQGSGHSETDVSKLITNFT 420
Query: 499 QMRVRMKNL-MGVMQGG 514
+MR M+ + MG M GG
Sbjct: 421 KMRTMMQQMGMGGMPGG 437
>SR54_BACSU (P37105) Signal recognition particle protein (Fifty-four
homolog)
Length = 446
Score = 405 bits (1040), Expect = e-112
Identities = 209/436 (47%), Positives = 312/436 (70%), Gaps = 4/436 (0%)
Query: 80 FGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVG 139
F L L+ +K++G+ ++++++ E MR++R ALLEADV+ VV+ FV+ VS++AVG
Sbjct: 3 FEGLADRLQQTISKIRGKGKVSEQDVKEMMREVRLALLEADVNFKVVKDFVKKVSERAVG 62
Query: 140 VGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKLS 199
V++ + P QQ++K+V EEL +LMGGE S++A AK TVI++ GLQG GKTT KL+
Sbjct: 63 QDVMKSLTPGQQVIKVVQEELTELMGGEESKIAVAKRPPTVIMMVGLQGAGKTTTSGKLA 122
Query: 200 NYL-KKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAKK 258
N L KK + MLVA DIYRPAAI QL LGKQ+ +PV++ G V P EIA+Q +E+AK+
Sbjct: 123 NLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIEKAKE 182
Query: 259 KKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 318
+ D VI+DTAGRL ID +MDEL VK+ NP E+ LVVD+MTGQ+A + +FN ++G
Sbjct: 183 EHYDYVILDTAGRLHIDHELMDELTNVKEIANPEEIFLVVDSMTGQDAVNVAKSFNEQLG 242
Query: 319 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVL 378
+TG +LTKLDGD+RGGAALS++ V+ PIK G GE++D LEPF+P+RMA RILGMGDVL
Sbjct: 243 LTGVVLTKLDGDTRGGAALSIRAVTNTPIKFAGLGEKLDALEPFHPERMASRILGMGDVL 302
Query: 379 SFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKVTP 438
+ +EKAQ + ++ A++L++K+ + F +DFL+Q V MG + ++ M+PG K+
Sbjct: 303 TLIEKAQASVDEDKAKELEQKMRTMSFTLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKG 362
Query: 439 AQ-IREAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQVVAQL 497
+ I+ EK L ++EA+I++MT E+E+P+++ S RRKR+A+ SG + Q+V++++ Q
Sbjct: 363 LKNIQVDEKQLNHVEAIIKSMTVLEKEQPDIINAS--RRKRIAKGSGTSVQEVNRLLKQF 420
Query: 498 FQMRVRMKNLMGVMQG 513
+M+ MK + + +G
Sbjct: 421 DEMKKMMKQMTNMSKG 436
>SR54_STRMU (Q54431) Signal recognition particle protein (Fifty-four
homolog)
Length = 516
Score = 392 bits (1008), Expect = e-108
Identities = 203/436 (46%), Positives = 298/436 (67%), Gaps = 7/436 (1%)
Query: 80 FGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVG 139
F LT L+ + L+G+ L+++++ E ++IR ALLEADV+LPVV+ F++ V +AVG
Sbjct: 3 FESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVG 62
Query: 140 VGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKLS 199
VI + P QQ++KIV+EEL ++G E +E+ + T+I++ GLQG GKTT KL+
Sbjct: 63 HEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKSSKIPTIIMMVGLQGAGKTTFAGKLA 122
Query: 200 NYL-KKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAKK 258
N L K++ +++A DIYRPAAIDQL LG+Q+ VPV+ GT+ EI QGL +AK+
Sbjct: 123 NKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTEHSAVEIVSQGLAQAKE 182
Query: 259 KKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 318
+ D V++DTAGRLQID+ +M EL+++K NP E+LLVVD+M GQEAA + FN ++
Sbjct: 183 NRNDYVLIDTAGRLQIDEKLMTELRDIKALANPNEILLVVDSMIGQEAANVAREFNQQLE 242
Query: 319 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVL 378
+TG ILTK+DGD+RGGAALSV++++GKPIK G GE++ D+E F+PDRM+ RILGMGD+L
Sbjct: 243 VTGVILTKIDGDTRGGAALSVRQITGKPIKFTGTGEKITDIETFHPDRMSSRILGMGDLL 302
Query: 379 SFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGM-SKVT 437
+ +EKA + ++ + +L EK+ FDFNDF++Q V MGS+ ++ MIPGM +
Sbjct: 303 TLIEKASQDYDEQKSAELAEKMRENSFDFNDFIEQLDQVQNMGSMEDILKMIPGMANNPA 362
Query: 438 PAQIREAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQVVAQL 497
A ++ E + A++ +MTPEERE P+LL +P RR+R+A SG T V++ +
Sbjct: 363 LANVKVDEGEIARKRAIVSSMTPEERENPDLL--TPSRRRRIASGSGNTFVNVNKFIKDF 420
Query: 498 FQMRVRMKNLMGVMQG 513
Q + K + GVM G
Sbjct: 421 NQAK---KMMQGVMSG 433
>SR54_MYCTU (P66844) Signal recognition particle protein (Fifty-four
homolog)
Length = 525
Score = 382 bits (980), Expect = e-105
Identities = 204/440 (46%), Positives = 289/440 (65%), Gaps = 9/440 (2%)
Query: 79 MFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 138
MF L+ L AA L+G+ LT +I R+IR ALLEADVSLPVVR F+ + ++A
Sbjct: 1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERAR 60
Query: 139 GVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKL 198
G V + P QQ+VKIV+EEL+ ++GGE ELAFAK+ TV++LAGLQG GKTT+ KL
Sbjct: 61 GAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKL 120
Query: 199 SNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSE-------IARQ 251
+ L+ QG + +LVA D+ RPAA++QL ++G++ GVPV+ P +A
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180
Query: 252 GLEEAKKKKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVT 311
GL EA+ K DVVIVDTAGRL ID+ +M + ++ ++NP EVL V+DAM GQ+A
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAA 240
Query: 312 TFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRI 371
F +G TG LTKLDGD+RGGAALSV+EV+G PI GE+++D + F+PDRMA RI
Sbjct: 241 AFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRI 300
Query: 372 LGMGDVLSFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIP 431
LGMGDVLS +E+A++V + AE+ KI + + DFL+Q AV +MG + ++GM+P
Sbjct: 301 LGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLP 360
Query: 432 GMSKVTPAQIREAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVS 491
G +++ A +K L ++A+I MTP+ER P+++ S RR R+A SG T +V+
Sbjct: 361 GAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVN 418
Query: 492 QVVAQLFQMRVRMKNLMGVM 511
Q+V + F+ R M +++G M
Sbjct: 419 QLVERFFEARKMMSSMLGGM 438
>SR54_MYCBO (P66845) Signal recognition particle protein (Fifty-four
homolog)
Length = 525
Score = 382 bits (980), Expect = e-105
Identities = 204/440 (46%), Positives = 289/440 (65%), Gaps = 9/440 (2%)
Query: 79 MFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 138
MF L+ L AA L+G+ LT +I R+IR ALLEADVSLPVVR F+ + ++A
Sbjct: 1 MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERAR 60
Query: 139 GVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKL 198
G V + P QQ+VKIV+EEL+ ++GGE ELAFAK+ TV++LAGLQG GKTT+ KL
Sbjct: 61 GAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKL 120
Query: 199 SNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSE-------IARQ 251
+ L+ QG + +LVA D+ RPAA++QL ++G++ GVPV+ P +A
Sbjct: 121 AARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAA 180
Query: 252 GLEEAKKKKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVT 311
GL EA+ K DVVIVDTAGRL ID+ +M + ++ ++NP EVL V+DAM GQ+A
Sbjct: 181 GLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAA 240
Query: 312 TFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRI 371
F +G TG LTKLDGD+RGGAALSV+EV+G PI GE+++D + F+PDRMA RI
Sbjct: 241 AFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRI 300
Query: 372 LGMGDVLSFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIP 431
LGMGDVLS +E+A++V + AE+ KI + + DFL+Q AV +MG + ++GM+P
Sbjct: 301 LGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLP 360
Query: 432 GMSKVTPAQIREAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVS 491
G +++ A +K L ++A+I MTP+ER P+++ S RR R+A SG T +V+
Sbjct: 361 GAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVN 418
Query: 492 QVVAQLFQMRVRMKNLMGVM 511
Q+V + F+ R M +++G M
Sbjct: 419 QLVERFFEARKMMSSMLGGM 438
>SR54_MYCLE (O33013) Signal recognition particle protein (Fifty-four
homolog)
Length = 521
Score = 380 bits (976), Expect = e-105
Identities = 205/440 (46%), Positives = 290/440 (65%), Gaps = 9/440 (2%)
Query: 79 MFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 138
MF L+ L L+G+ LT +I R+IR AL EADVSLPVVR FV + ++A
Sbjct: 1 MFESLSNRLTGVIQGLRGKGRLTDADIEATTREIRLALFEADVSLPVVRAFVHRIKERAR 60
Query: 139 GVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKL 198
G V + P QQ+VKIV+EEL+ ++GGE +LAFAK+ TV++LAGLQG GKTT+ KL
Sbjct: 61 GTEVSAALNPAQQIVKIVNEELIGILGGETRQLAFAKTPPTVVMLAGLQGSGKTTLAGKL 120
Query: 199 SNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYT----AGTDVKPSE---IARQ 251
+ L++QG + +LVA D+ RPAA++QL ++G++ GVPV+ A D P + +A
Sbjct: 121 AVRLRRQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPDSGPGDPVAVASA 180
Query: 252 GLEEAKKKKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVT 311
GL EA+ K DVVIVDTAGRL ID +M + +++++NP EVL V+DAM GQ+A
Sbjct: 181 GLVEARAKHFDVVIVDTAGRLGIDDELMAQAGAIREAINPDEVLFVLDAMIGQDAVTTAA 240
Query: 312 TFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRI 371
F +G TG +LTKLDGD+RGGAALSV+EV+G PI GE++DD + F+PDRMA RI
Sbjct: 241 AFGAGVGFTGVVLTKLDGDARGGAALSVREVTGVPILFATTGEKLDDFDVFHPDRMASRI 300
Query: 372 LGMGDVLSFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIP 431
LGMGDVLS +E+A++V E AE KI++ + DFL+Q AV +MG + ++GM+P
Sbjct: 301 LGMGDVLSLIEQAEQVFDAEQAEAAAAKIVAGELTLEDFLEQMLAVRKMGLIGNLLGMLP 360
Query: 432 GMSKVTPAQIREAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVS 491
G +V + +K L ++A+I MTP+ER P+++ S RR R+A SG T +V+
Sbjct: 361 GAGQVKEVLEQVDDKQLDRLQAIIRGMTPQERADPKIINAS--RRLRIANGSGVTVSEVN 418
Query: 492 QVVAQLFQMRVRMKNLMGVM 511
Q+V + F+ R M +++G M
Sbjct: 419 QLVDRFFEARKMMSSVLGGM 438
>SR54_ECOLI (P07019) Signal recognition particle protein (Fifty-four
homolog) (P48)
Length = 453
Score = 377 bits (968), Expect = e-104
Identities = 206/454 (45%), Positives = 292/454 (63%), Gaps = 10/454 (2%)
Query: 79 MFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 138
MF LT L + G LT++N+ + +R++R ALLEADV+LPVVR F+ V ++AV
Sbjct: 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV 60
Query: 139 GVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKL 198
G V + + P Q+ VKIV ELV MG E L A V+L+AGLQG GKTT KL
Sbjct: 61 GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120
Query: 199 SNYLK-KQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAK 257
+L+ K K ++V+ D+YRPAAI QL L +QVGV + + KP +I L+EAK
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180
Query: 258 KKKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEI 317
K DV++VDTAGRL +D+AMMDE+K+V S+NP E L VVDAMTGQ+AA FN +
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240
Query: 318 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDV 377
+TG +LTK+DGD+RGGAALS++ ++GKPIK +G GE+ + LEPF+PDR+A RILGMGDV
Sbjct: 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDV 300
Query: 378 LSFVEKAQEVMQQEDAEKLQEKIMSAK-FDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKV 436
LS +E + + + AEKL K+ FD NDFL+Q R + MG ++ +MG +PGM ++
Sbjct: 301 LSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI 360
Query: 437 TPAQIREA--EKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQVV 494
P ++ +K L MEA+I +MT +ER KPE++ S R++R+A G Q V++++
Sbjct: 361 -PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLL 417
Query: 495 AQLFQMRVRMKNLMGVMQGGSMPTLSNLEEALKP 528
Q M+ MK + +GG + +++ + P
Sbjct: 418 KQFDDMQRMMKKM---KKGGMAKMMRSMKGMMPP 448
>SR54_AQUAE (O67615) Signal recognition particle protein (Fifty-four
homolog)
Length = 454
Score = 356 bits (913), Expect = 1e-97
Identities = 188/444 (42%), Positives = 290/444 (64%), Gaps = 11/444 (2%)
Query: 79 MFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 138
M LT A KL +T++NI + +R+IR ALLEADV V + F++ + ++ V
Sbjct: 1 MLELLTEKFSHALEKLTNARKITEKNINQTLREIRLALLEADVDYQVAKDFIKRIREKVV 60
Query: 139 GVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKL 198
G V + + P + ++K V+EELV ++GGE ++L K GT +L GLQG GKTT K+
Sbjct: 61 GKEVPKNLSPAEFVIKTVYEELVDILGGEKADL---KKGT--VLFVGLQGTGKTTTIGKI 115
Query: 199 SNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAKK 258
+N LKK G + + D+ RPAA+ QL L ++VGVP Y + EIAR+ ++ AK+
Sbjct: 116 ANLLKKGGHKVAVSSTDLRRPAAMLQLQRLAERVGVPYYEFEEGLGAVEIARRAVKRAKE 175
Query: 259 KKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 318
+ +D +++DTAGRL +D+ +M EL+E+K+ NP+E+L V DAM GQ A TF+ +G
Sbjct: 176 ESVDYLLLDTAGRLHVDEELMKELQEIKEVTNPSEILYVADAMQGQTALETAKTFHERLG 235
Query: 319 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVL 378
+TG ++TK+DGD+RGG ALSVKEV G PIK +G GE+++D+EPFYPDR+A RILG+GD+
Sbjct: 236 LTGVVITKMDGDARGGLALSVKEVLGVPIKFIGVGEKIEDIEPFYPDRIAQRILGLGDIQ 295
Query: 379 SFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKVTP 438
S VEKAQEV+ ++ A+ + K+M+ +FD D + R + QMG + +++ MIPG++
Sbjct: 296 SLVEKAQEVITEDKAQVMATKVMTGEFDLEDLREMLRMIQQMGPLDKLLSMIPGVAPQL- 354
Query: 439 AQIREAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQVVAQLF 498
++ EK K +EA+I +MTPEER P+++ S R+KR+A+ SG T V++++ +
Sbjct: 355 KHLKVDEKQFKKIEAIINSMTPEERRNPKIINMS--RKKRIARGSGTTVSDVNKLLKRYE 412
Query: 499 QMRVRMKNLMGVMQGGSMPTLSNL 522
+M+ M+ L + G MP + +
Sbjct: 413 EMKKMMRKL---QKAGGMPAIPKM 433
>SR54_RICCN (Q92J55) Signal recognition particle protein (Fifty-four
homolog)
Length = 449
Score = 353 bits (905), Expect = 9e-97
Identities = 192/434 (44%), Positives = 282/434 (64%), Gaps = 8/434 (1%)
Query: 79 MFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 138
MF LT L ++KL +LT+ I MRDIR ALLE+DV+LPV++ F+ V +A+
Sbjct: 1 MFKTLTQNLTKIFDKLVSSGILTEAQIDAAMRDIRVALLESDVALPVIKDFIAEVKQKAL 60
Query: 139 GVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVI--LLAGLQGVGKTTVCA 196
G VI+ V P Q ++KI+HEE++ L+ SE + + L+ GLQG GKTT +
Sbjct: 61 GQEVIKSVSPGQMIIKIIHEEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTTASS 120
Query: 197 KLSNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEA 256
KL+ L+ Q K +LV+ D YRPAA +QL IL V + KP +I ++ + EA
Sbjct: 121 KLALRLRNQNKKVLLVSLDTYRPAAQEQLAILANSVQINSLPIVQGEKPLDIVKRAIAEA 180
Query: 257 KKKKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLE 316
K DVVI DTAGR QIDKAMM+E +KK + PTE LLV+D+MTGQ+A ++FN +
Sbjct: 181 KISAYDVVIYDTAGRTQIDKAMMEEALAIKKIVEPTETLLVIDSMTGQDAVVTASSFNEK 240
Query: 317 IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGD 376
+ I+G IL+++DGDS+GGAALSVK ++ KPIK + GE + DLE F +R+A RIL MGD
Sbjct: 241 LAISGLILSRIDGDSKGGAALSVKYITKKPIKFLSSGENLIDLEEFDAERLASRILDMGD 300
Query: 377 VLSFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKV 436
++SFVEKA ++ +E+AEK K+ KFD ND+L+Q R++ +MG ++ M+PG K+
Sbjct: 301 IISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKI 360
Query: 437 TPAQIREAEKN---LKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQV 493
QI +++ N +++ EA+I +MTP+ER+ P+++ S RRKR+A +G T Q+V+ +
Sbjct: 361 MD-QIDQSKLNSKIIEHQEAIILSMTPKERKNPDIINAS--RRKRIAVGAGTTVQKVNIL 417
Query: 494 VAQLFQMRVRMKNL 507
+ Q Q+ MK +
Sbjct: 418 LKQYKQISEIMKKV 431
>SR54_HAEIN (P44518) Signal recognition particle protein (Fifty-four
homolog)
Length = 462
Score = 346 bits (887), Expect = 1e-94
Identities = 191/432 (44%), Positives = 276/432 (63%), Gaps = 5/432 (1%)
Query: 79 MFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 138
MF L+ L + G+ LT++NI E +R++R ALLEADV+LPVVR F+ V + A+
Sbjct: 1 MFENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESAL 60
Query: 139 GVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKL 198
G V + + P Q+ +KIV EL K MG L A VIL+AGLQG GKTT KL
Sbjct: 61 GEEVNKSLTPGQEFLKIVQRELEKAMGEANESLNLATQPPAVILMAGLQGAGKTTSVGKL 120
Query: 199 SNYLKKQGKSCMLV-AGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAK 257
+ +L+++ K +LV + D+YRPAAI QL L + VGV + + P +IA+ L +AK
Sbjct: 121 AKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALADAK 180
Query: 258 KKKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEI 317
K DV+IVDTAGRL +D MMDE+K+V +LNP E L VDAMTGQ+AA FN +
Sbjct: 181 LKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALNPIETLFTVDAMTGQDAANTAKAFNEAL 240
Query: 318 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDV 377
+TG ILTK+DGD+RGGAALS+++++GKPIK +G GE+ + LEPF+PDR+A RILGMGDV
Sbjct: 241 PLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGDV 300
Query: 378 LSFVEKAQEVMQQEDAEKLQEKIMSA-KFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKV 436
LS +E + + +E AEK+ +K F +DF +Q + +MG + ++ +PG +
Sbjct: 301 LSLIEDLERSVDREKAEKMAQKFKKGDDFTLDDFREQLIEMKKMGGMMSMLEKLPGAKNL 360
Query: 437 TP-AQIREAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQVVA 495
+ + + +K MEA+I +MT +ER P+++ S RR+R+A SG Q V++++
Sbjct: 361 SEHVKNQVDDKMFVKMEAIINSMTLKERANPDIIKGS--RRRRIALGSGTQVQDVNKLLK 418
Query: 496 QLFQMRVRMKNL 507
Q +M+ MK +
Sbjct: 419 QFDEMQRMMKKM 430
>SR54_RICPR (Q9ZDZ0) Signal recognition particle protein (Fifty-four
homolog)
Length = 449
Score = 345 bits (885), Expect = 2e-94
Identities = 188/432 (43%), Positives = 280/432 (64%), Gaps = 8/432 (1%)
Query: 79 MFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 138
MF LT L ++KL +LT+ I MRD+R ALLE+DV+LPV++ F++ V +A+
Sbjct: 1 MFKTLTQNLTKIFDKLVNSGILTENQIDTAMRDVRVALLESDVALPVIKGFIEEVKQKAL 60
Query: 139 GVGVIRGVKPDQQLVKIVHEELVKLMGGEVS--ELAFAKSGTTVILLAGLQGVGKTTVCA 196
G VI+ V P Q ++KI+HEE++ L+ S +L +L+ GLQG GKTT
Sbjct: 61 GQEVIKSVSPGQMIIKIIHEEMINLLASTESTTKLNLNAKPPVNLLIVGLQGGGKTTASG 120
Query: 197 KLSNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEA 256
KL+ LK Q K +LV+ D YRPAA +QL I+ V + KP +I ++ + EA
Sbjct: 121 KLALRLKNQNKKVLLVSLDTYRPAAQEQLAIIANSVNIDSLPIVKGEKPLDIVKRAIGEA 180
Query: 257 KKKKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLE 316
+ DVVI DTAGR+QID MM+E +KK LNPTE LLV+D+MTGQ+A TF+ +
Sbjct: 181 QISAYDVVIYDTAGRIQIDNVMMEEALAIKKILNPTETLLVIDSMTGQDAVITAKTFSEK 240
Query: 317 IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGD 376
+ I+G IL+++DGD++GGAALSVK + KPIK + GE++ DLE F +R+A RIL MGD
Sbjct: 241 LEISGLILSRIDGDTKGGAALSVKYFTQKPIKFLSSGEKLTDLEEFNAERLASRILDMGD 300
Query: 377 VLSFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKV 436
++SFV+KA ++ +E+AEK K+ S KFD ND+L+Q R++ +MG ++ M+PG K+
Sbjct: 301 IISFVKKAASIVDREEAEKTAIKLKSGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKI 360
Query: 437 TPAQIREAEKN---LKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQV 493
QI +++ N +++ EA+I +MT +ER+ P+++ S RRKR+A +G T Q+V+ +
Sbjct: 361 FD-QIDQSKLNSKIIEHQEAIILSMTLKERKNPDIINAS--RRKRIAAGAGMTVQKVNIL 417
Query: 494 VAQLFQMRVRMK 505
+ Q Q+ MK
Sbjct: 418 LKQYKQISAVMK 429
>SR54_THEAQ (O07347) Signal recognition particle protein (Fifty-four
homolog)
Length = 429
Score = 341 bits (874), Expect = 3e-93
Identities = 188/428 (43%), Positives = 283/428 (65%), Gaps = 13/428 (3%)
Query: 80 FGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVG 139
F QL+ L+ A +L+G +T+E++ +R+IRRAL++ADV+L V R FV+ V ++A+G
Sbjct: 1 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALG 60
Query: 140 VGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKLS 199
V+ + P + ++ V+E L + +GGE + L K + L GLQG GKTT AKL+
Sbjct: 61 KQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKD-RNLWFLVGLQGSGKTTTAAKLA 118
Query: 200 NYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAKKK 259
Y K +G+ +LVA D RPAA +QL +LG++VGVPV P I R+ E+A+ +
Sbjct: 119 LYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE 178
Query: 260 KIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIGI 319
D+++VDTAGRLQID+ +M EL +K+ L P EVLLV+DAMTGQEA ++ F+ ++G+
Sbjct: 179 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGV 238
Query: 320 TGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLS 379
TG +LTKLDGD+RGGAALS + V+GKPI G E+ + LEPFYP+R+AGRILGMGDV S
Sbjct: 239 TGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGDVAS 298
Query: 380 FVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKVTPA 439
EK + + +A K +++ DFLKQ + + ++G S ++G++PG+ P
Sbjct: 299 LAEKVRAAGLEAEAPKSAKEL-----SLEDFLKQMQNLKRLGPFSEILGLLPGV----PQ 349
Query: 440 QIREAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQVVAQLFQ 499
++ EK +K +EA++ +MTPEER+ P +L S RRKR+A+ SG + Q+V++ + +
Sbjct: 350 GLKVDEKAIKRLEAIVLSMTPEERKDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEE 407
Query: 500 MRVRMKNL 507
M+ MK+L
Sbjct: 408 MKALMKSL 415
>SR54_MYCMY (Q01442) Signal recognition particle protein (Fifty-four
homolog)
Length = 447
Score = 315 bits (808), Expect = 2e-85
Identities = 168/439 (38%), Positives = 277/439 (62%), Gaps = 5/439 (1%)
Query: 83 LTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGV 142
L+ ++ + K L +ENI E +++IR +LLEADV++ + + +V +A+G +
Sbjct: 7 LSKRMQKSIEKNMKNSTLNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYI 66
Query: 143 IRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKLSNYL 202
G QQ++KIVHEELV ++G E + L K +V+++ GLQG GKTT KL+ L
Sbjct: 67 SEGASAHQQMIKIVHEELVNILGKENAPLDINKK-PSVVMMVGLQGSGKTTTANKLAYLL 125
Query: 203 KKQGKSCMLVAG-DIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAKKKKI 261
K+ K +L+ G DIYRP AI+QL LG++ V+ G P + A Q LE AK+
Sbjct: 126 NKKNKKKVLLVGLDIYRPGAIEQLVQLGQKTNTQVFEKGKQ-DPVKTAEQALEYAKENNF 184
Query: 262 DVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITG 321
DVVI+DTAGRLQ+D+ +M EL +KK +P E+LLVVD M+GQE + FN ++ ++G
Sbjct: 185 DVVILDTAGRLQVDQVLMKELDNLKKKTSPNEILLVVDGMSGQEIINVTNEFNDKLKLSG 244
Query: 322 AILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFV 381
++TKLDGD+RGGA LS+ ++ PIK +G GE + L FYP RMA R++GMGD+ +
Sbjct: 245 VVVTKLDGDARGGATLSISYLTKLPIKFIGEGEGYNALAAFYPKRMADRLMGMGDIETLF 304
Query: 382 EKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKVTPAQI 441
E+A E + + +K ++ +FD D Q +A+MGS++++M M+P ++KV+ +QI
Sbjct: 305 ERAVENIDERSIQKTMNRMFLGQFDLEDLRNQLAQIAKMGSLNKLMKMLP-INKVSESQI 363
Query: 442 REAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQVVAQLFQMR 501
+EA++ L ++++MT +ER P +L ++ R+ R+ + SG++E++ ++++ + +
Sbjct: 364 QEAQRKLAVFSILMDSMTLKERRDPRVL-KAISRKNRIIKGSGRSEKEFNELINSFEKGK 422
Query: 502 VRMKNLMGVMQGGSMPTLS 520
++ + +++ G MP LS
Sbjct: 423 KQVLEITKMIKSGRMPNLS 441
>SR54_METJA (Q57565) Signal recognition 54 kDa protein (SRP54)
Length = 451
Score = 310 bits (795), Expect = 5e-84
Identities = 168/419 (40%), Positives = 263/419 (62%), Gaps = 8/419 (1%)
Query: 79 MFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 138
M +L L A NKLK + K+ I E ++DI+RAL++ADV++ +V + + + +A+
Sbjct: 1 MLDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRAL 60
Query: 139 GVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKL 198
+G+ + ++KIV+EELVKL+G E +L VILL G+QG GKTT AKL
Sbjct: 61 EEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKL 120
Query: 199 SNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVK-PSEIARQGLEEAK 257
+ Y++K+G L+A D YRPAA +QL L +++ VP+Y T K P +I ++G+E K
Sbjct: 121 ARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME--K 178
Query: 258 KKKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEI 317
KK DV+I+DTAGR + +K +++E+K++K+ NP E++LV+D GQ+A F +
Sbjct: 179 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAV 238
Query: 318 GITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGD 376
G G+I+ TKLDG ++GG ALS + PIK +G GE +DDLEPF P + R+LGMGD
Sbjct: 239 GEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGD 298
Query: 377 VLSFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKV 436
+ S +EKA++++ ++ E + + IM KF N+ + Q A+ MGS+ +++ MIPG
Sbjct: 299 LESLLEKAEDMVDEKTEESI-DAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGA 357
Query: 437 TPAQIRE-AEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQVV 494
P ++ E +K + +I +MT EERE P+++ S +R R+A+ SG TE V +V+
Sbjct: 358 MPKELSHLTEAKIKKYKVIISSMTKEERENPKIIKASRIR--RIARGSGTTENDVREVL 414
>SR54_BUCAI (P57473) Signal recognition particle protein (Fifty-four
homolog)
Length = 451
Score = 308 bits (788), Expect = 3e-83
Identities = 172/433 (39%), Positives = 272/433 (62%), Gaps = 6/433 (1%)
Query: 79 MFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 138
MF LT L + K+ + LT+ENI E +R++R+ALLEADV+L V+++F+++V +++
Sbjct: 1 MFNNLTQRLSDSLKKILNKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSI 60
Query: 139 GVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKL 198
G + + + P Q+ +KIV EL+ MG + L F+ VIL+ GLQG GKTT AKL
Sbjct: 61 GHEINKSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIEPPAVILVVGLQGSGKTTSLAKL 120
Query: 199 SNYLK-KQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAK 257
++K K K ++ + D YR AAI+QL IL Q+ + + + P EI + ++ AK
Sbjct: 121 GKWIKNKYKKKILITSTDTYRAAAIEQLKILSDQIEIDFFESDKHHTPIEITKNAIKYAK 180
Query: 258 KKKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEI 317
K DV+++DTAGRL IDK MM+E+++++ E LL+VD+M GQ+A + FN ++
Sbjct: 181 LKLYDVLLIDTAGRLHIDKKMMNEIQQIQVISKAIETLLIVDSMMGQDAINMAKIFNNDL 240
Query: 318 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDV 377
I+G ILTK DGDSR G ALS++ ++GKPIK +G GE++ LEPF+P+R+A RILGM D+
Sbjct: 241 LISGIILTKTDGDSRSGIALSMRYITGKPIKFIGTGEKIISLEPFHPERIADRILGMNDI 300
Query: 378 LSFVEKAQEVMQQEDAEKLQEKIMSA-KFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKV 436
+S +E +E + Q +KL +K+ F+ NDFL Q + + ++G ++ ++
Sbjct: 301 MSLIEDIEEKVDQSQIQKLTKKLKKGHDFNLNDFLTQIKQMKKIGGLNYFANKFSINHQL 360
Query: 437 T-PAQIREAEKN-LKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQVV 494
+ + +KN LK +EAMI +MTP+ER KP ++ S R++R+A SG Q V++++
Sbjct: 361 SNNISLLNTDKNTLKKIEAMICSMTPKERIKPIIIKGS--RKRRIALGSGTQIQDVNKLL 418
Query: 495 AQLFQMRVRMKNL 507
+R MK +
Sbjct: 419 KNFDDIRRIMKKI 431
>SR54_HELPJ (Q9ZK62) Signal recognition particle protein (Fifty-four
homolog)
Length = 448
Score = 306 bits (785), Expect = 7e-83
Identities = 171/439 (38%), Positives = 272/439 (61%), Gaps = 17/439 (3%)
Query: 79 MFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 138
MF L+ G + A NK++ ++ ++ + + ++++ LL+ DV V R ++ V Q
Sbjct: 1 MFQALSDGFKNALNKIRFQD--DEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTK 58
Query: 139 GVGVIRGVKPDQQLVKIVHEELVKLMGGEVSE-LAFAKSGTTVILLAGLQGVGKTTVCAK 197
G+ + QQ + + + L++++ + S FA++ TV+L+AGLQG GKTT AK
Sbjct: 59 AGGIGK-----QQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAK 113
Query: 198 LSNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAK 257
L++YLK + K +L A D+ R AA++QL +LG+QVGV V+ + EIA L+ AK
Sbjct: 114 LAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVFHE-ENKSVKEIANNALKRAK 172
Query: 258 KKKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEI 317
+ + DV+IVD+AGRL IDK +M ELKEVK+ LNP EVL V DA++GQ+ TFN EI
Sbjct: 173 EAQFDVLIVDSAGRLAIDKELMQELKEVKEVLNPHEVLYVADALSGQDGVKSANTFNEEI 232
Query: 318 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDV 377
G++G +L+K D DS+GG AL + G P++ +G GE++ DL+ F P+R+ GR++G GD+
Sbjct: 233 GVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFMPERIVGRLMGAGDI 292
Query: 378 LSFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKVT 437
+S EK V+ +A+ L +K+ +F FNDFL Q V ++GS+S ++ MIPG+ +
Sbjct: 293 ISLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMA 352
Query: 438 PA---QIREAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQVV 494
A E+ +K ++AM+ +MT +ERE PE+L S RRKR+A SG ++++++
Sbjct: 353 SALKDTDLESSLEVKKIKAMVNSMTKKERENPEILNGS--RRKRIALGSGLEVSEINRII 410
Query: 495 A---QLFQMRVRMKNLMGV 510
Q +M R+ N G+
Sbjct: 411 KRFDQASKMAKRLTNKKGI 429
>SR54_HELPY (P56005) Signal recognition particle protein (Fifty-four
homolog)
Length = 448
Score = 303 bits (777), Expect = 6e-82
Identities = 172/440 (39%), Positives = 273/440 (61%), Gaps = 19/440 (4%)
Query: 79 MFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 138
MF L+ G + A NK++ ++ ++ + + ++++ LL+ DV V R ++ V Q
Sbjct: 1 MFQALSDGFKNALNKIRFQD--DEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTK 58
Query: 139 GVGVIRGVKPDQQLVKIVHEELVKLMGGEVSE-LAFAKSGTTVILLAGLQGVGKTTVCAK 197
G+ + QQ + + + L++++ + S FA++ TV+L+AGLQG GKTT AK
Sbjct: 59 LNGIGK-----QQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAK 113
Query: 198 LSNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPV-YTAGTDVKPSEIARQGLEEA 256
L++YLK + K +L A D+ R AA++QL +LG+QVGV V Y VK EIA L+ A
Sbjct: 114 LAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVFYEENKSVK--EIASNALKRA 171
Query: 257 KKKKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLE 316
K+ + DV++VD+AGRL IDK +M ELKEVK+ LNP EVL V DA++GQ+ TFN E
Sbjct: 172 KEAQFDVLLVDSAGRLAIDKELMQELKEVKEILNPHEVLYVADALSGQDGVKSANTFNEE 231
Query: 317 IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGD 376
IG++G +L+K D DS+GG AL + G P++ +G GE++ DL+ F P+R+ GR++G GD
Sbjct: 232 IGVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291
Query: 377 VLSFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKV 436
++S EK V+ +A+ L +K+ +F FNDFL Q V ++GS+S ++ MIPG+ +
Sbjct: 292 IVSLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNM 351
Query: 437 TPA---QIREAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQV 493
A E+ +K ++AM+ +MT +E+E PE+L S RRKR+A SG +++++
Sbjct: 352 ASALKDTDLESSLEVKKIKAMVNSMTKKEQENPEILNGS--RRKRIALGSGLEVSEINRI 409
Query: 494 VA---QLFQMRVRMKNLMGV 510
+ Q +M R+ N G+
Sbjct: 410 IKRFDQASKMAKRLTNKKGI 429
>SR54_BUCAP (Q8K9F7) Signal recognition particle protein (Fifty-four
homolog)
Length = 450
Score = 301 bits (771), Expect = 3e-81
Identities = 167/447 (37%), Positives = 270/447 (60%), Gaps = 5/447 (1%)
Query: 79 MFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAV 138
MF LT L + K+ + LT+ENI + +R++R+ALLEADV+L V+++F+Q+VS +A+
Sbjct: 1 MFNNLTERLSQSLRKIINKGRLTEENIKDTIREVRKALLEADVTLSVIKKFIQNVSKKAI 60
Query: 139 GVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKL 198
G + + + P Q+ +KIV EL+ MG + +L + +IL+ GLQGVGKTT KL
Sbjct: 61 GHEINKSLTPGQEFIKIVKNELILSMGEKNHDLNLSIQPPAIILVVGLQGVGKTTTLVKL 120
Query: 199 SNYLK-KQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAK 257
+ ++K K K + V+ DIYR AAI QL IL QV + Y + T P I ++ +E AK
Sbjct: 121 AKWIKEKYKKKILTVSTDIYRAAAIKQLQILSDQVKIDFYLSDTTQTPINITKEAIEHAK 180
Query: 258 KKKIDVVIVDTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEI 317
K D++++DTAGRL I+ MM+E+ ++ P E LL+VD+M GQ+A + F+ +
Sbjct: 181 LKLYDLLLIDTAGRLHINTEMMNEINTIQNISKPIETLLIVDSMMGQDAINIAKKFSASL 240
Query: 318 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDV 377
I+G ++TK D D+R G ALS++ ++GKPIK +G GE++ LEPF+P+R+A RILGM V
Sbjct: 241 SISGIVITKTDSDARSGVALSIRHITGKPIKFIGTGEKLHQLEPFHPERIADRILGMNQV 300
Query: 378 LSFVEKAQEVMQQEDAEKLQEKIMSA-KFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKV 436
+S ++ +E + Q + L +K F+ NDFL Q + + MG+++ + +
Sbjct: 301 ISLIKDIEEKVNQSQVKNLTKKFRKGDDFNLNDFLIQLKEMKNMGNLNYFIEKFSKNKIL 360
Query: 437 TPAQIREAEKN-LKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQVVA 495
+ + KN L +EA+I +MT +ER P ++ S R++R+A SG Q V++++
Sbjct: 361 SNNPLLGENKNTLNRIEAIIYSMTHKERMHPIIIKGS--RKRRIALGSGTKIQDVNKLLK 418
Query: 496 QLFQMRVRMKNLMGVMQGGSMPTLSNL 522
++ MK + G + +SN+
Sbjct: 419 NFDNIKKIMKKIKKGGIGKMIRNISNI 445
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.314 0.130 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,170,246
Number of Sequences: 164201
Number of extensions: 2525696
Number of successful extensions: 10005
Number of sequences better than 10.0: 341
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 202
Number of HSP's that attempted gapping in prelim test: 9550
Number of HSP's gapped (non-prelim): 427
length of query: 564
length of database: 59,974,054
effective HSP length: 115
effective length of query: 449
effective length of database: 41,090,939
effective search space: 18449831611
effective search space used: 18449831611
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0010.7