BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.5
(224 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DLDH_SYNY3 (P72740) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3... 35 0.19
RNHL_BACSU (P54162) 14.7 kDa ribonuclease H-like protein 33 0.71
DLDH_PIG (P09623) Dihydrolipoyl dehydrogenase, mitochondrial pre... 32 1.6
DLDH_HUMAN (P09622) Dihydrolipoyl dehydrogenase, mitochondrial p... 32 1.6
POLG_CXB1J (P08291) Genome polyprotein [Contains: Coat protein V... 31 2.1
LFTR_VIBPA (Q87QY1) Leucyl/phenylalanyl-tRNA--protein transferas... 31 2.1
DLDH_CANFA (P49819) Dihydrolipoyl dehydrogenase, mitochondrial p... 31 2.1
POLG_CXB3W (Q66282) Genome polyprotein [Contains: Coat protein V... 31 2.7
POLG_CXB3N (P03313) Genome polyprotein [Contains: Coat protein V... 31 2.7
POLG_EC30B (Q9WN78) Genome polyprotein [Contains: Coat protein V... 30 3.5
POLG_EC12T (Q66575) Genome polyprotein [Contains: Coat protein V... 30 3.5
POLG_EC11G (P29813) Genome polyprotein [Contains: Coat protein V... 30 3.5
POLG_EC09H (Q66849) Genome polyprotein [Contains: Coat protein V... 30 3.5
POLG_EC06C (Q66474) Genome polyprotein [Contains: Coat protein V... 30 3.5
POLG_EC05N (Q9YLJ1) Genome polyprotein [Contains: Coat protein V... 30 3.5
POLG_EC01F (O91734) Genome polyprotein [Contains: Coat protein V... 30 3.5
POLG_CXB5P (Q03053) Genome polyprotein [Contains: Coat protein V... 30 3.5
POLG_CXB4J (P08292) Genome polyprotein [Contains: Coat protein V... 30 3.5
POLG_CXA9 (P21404) Genome polyprotein [Contains: Coat protein VP... 30 3.5
Y163_SYNY3 (Q55563) Hypothetical WD-repeat protein sll0163 30 4.6
>DLDH_SYNY3 (P72740) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3
component of pyruvate complex) (Dihydrolipoamide
dehydrogenase) (LPD)
Length = 473
Score = 34.7 bits (78), Expect = 0.19
Identities = 26/67 (38%), Positives = 35/67 (51%), Gaps = 5/67 (7%)
Query: 115 HGAKL-ALDRGFKKVMIESDSAFAVNLVNKGCLPSKPAAALVKNIKRTLSNFDQVHLKHV 173
HGA L A+ G K +IE+ VN+GC+PSK AL+ R DQ HL+ +
Sbjct: 18 HGAALHAVKCGLKTAIIEAKD-MGGTCVNRGCIPSK---ALLAASGRVREMSDQDHLQQL 73
Query: 174 FREINSV 180
+IN V
Sbjct: 74 GIQINGV 80
>RNHL_BACSU (P54162) 14.7 kDa ribonuclease H-like protein
Length = 132
Score = 32.7 bits (73), Expect = 0.71
Identities = 27/109 (24%), Positives = 42/109 (37%), Gaps = 1/109 (0%)
Query: 83 GVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNLVN 142
G+ H G FS +G + AE + G KL RG++ V +DS
Sbjct: 21 GIFIKHEGK-AESFSIPIGVHTNQEAEFLALIEGMKLCATRGYQSVSFRTDSDIVERATE 79
Query: 143 KGCLPSKPAAALVKNIKRTLSNFDQVHLKHVFREINSVADAFAKNGLGL 191
+ + V+ I R + F +K + + N AD AK + L
Sbjct: 80 LEMVKNITFQPFVEEIIRLKAAFPLFFIKWIPGKQNQKADLLAKEAIRL 128
>DLDH_PIG (P09623) Dihydrolipoyl dehydrogenase, mitochondrial
precursor (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase)
Length = 509
Score = 31.6 bits (70), Expect = 1.6
Identities = 19/46 (41%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 112 GIYHGAKLALDRGFKKVMIESDSAFAVNLVNKGCLPSKPAAALVKN 157
G Y A A GFK V IE + +N GC+PSK AL+ N
Sbjct: 52 GGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSK---ALLNN 94
>DLDH_HUMAN (P09622) Dihydrolipoyl dehydrogenase, mitochondrial
precursor (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase)
(Glycine cleavage system L protein)
Length = 509
Score = 31.6 bits (70), Expect = 1.6
Identities = 19/46 (41%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 112 GIYHGAKLALDRGFKKVMIESDSAFAVNLVNKGCLPSKPAAALVKN 157
G Y A A GFK V IE + +N GC+PSK AL+ N
Sbjct: 52 GGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSK---ALLNN 94
>POLG_CXB1J (P08291) Genome polyprotein [Contains: Coat protein VP4
(P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core
protein P2A); Core protein P2B; Core protein P2C; Core
protein P3A; Genome
Length = 2182
Score = 31.2 bits (69), Expect = 2.1
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 81 CGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNL 140
CGG+LR +G +VG + G + FA++ + A+++G K + + +AF
Sbjct: 958 CGGILRCEHG--VVGIVTMGGEGVVGFADVRDLLWLEDDAMEQGVKDYVEQLGNAFGSGF 1015
Query: 141 VNKGC 145
N+ C
Sbjct: 1016 TNQVC 1020
>LFTR_VIBPA (Q87QY1) Leucyl/phenylalanyl-tRNA--protein transferase
(EC 2.3.2.6) (L/F-transferase) (Leucyltransferase)
(Phenyalanyltransferase)
Length = 236
Score = 31.2 bits (69), Expect = 2.1
Identities = 26/93 (27%), Positives = 41/93 (43%), Gaps = 8/93 (8%)
Query: 3 WTARNELVFEKLGHTPAVVCSKIKKLSQDFLYTLTDATDDALIQRAHGTGDLRWVPPNDD 62
W+ VF+ L P+ K ++ Q + T+ AT+ +IQ T P ++
Sbjct: 60 WSPSPRAVFDPLTFKPSKSLKKFQRKHQ-YKVTINQATEH-VIQLCSSTR-----PADET 112
Query: 63 WIKINTDGSYSPVSNLAACGGVLRDHNGNYLVG 95
W+ +Y +SNL C V H+ N LVG
Sbjct: 113 WLNEEMQAAYIQLSNLGHCHSVEVWHD-NTLVG 144
>DLDH_CANFA (P49819) Dihydrolipoyl dehydrogenase, mitochondrial
precursor (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase)
Length = 509
Score = 31.2 bits (69), Expect = 2.1
Identities = 18/46 (39%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 112 GIYHGAKLALDRGFKKVMIESDSAFAVNLVNKGCLPSKPAAALVKN 157
G Y A A GFK V +E + +N GC+PSK AL+ N
Sbjct: 52 GGYVAAIKAAQLGFKTVCVEKNETLGGTCLNVGCIPSK---ALLNN 94
>POLG_CXB3W (Q66282) Genome polyprotein [Contains: Coat protein VP4
(P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core
protein P2A); Core protein P2B; Core protein P2C; Core
protein P3A; Genome
Length = 2185
Score = 30.8 bits (68), Expect = 2.7
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 81 CGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNL 140
CGG+LR +G ++G + G + FA++ + A+++G K + + +AF
Sbjct: 961 CGGILRCEHG--VIGIVTMGGEGVVGFADIRDLLWLEDDAMEQGVKDYVEQLGNAFGSGF 1018
Query: 141 VNKGC 145
N+ C
Sbjct: 1019 TNQIC 1023
>POLG_CXB3N (P03313) Genome polyprotein [Contains: Coat protein VP4
(P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core
protein P2A); Core protein P2B; Core protein P2C; Core
protein P3A; Genome
Length = 2185
Score = 30.8 bits (68), Expect = 2.7
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 81 CGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNL 140
CGG+LR +G ++G + G + FA++ + A+++G K + + +AF
Sbjct: 961 CGGILRCEHG--VIGIVTMGGEGVVGFADIRDLLWLEDDAMEQGVKDYVEQLGNAFGSGF 1018
Query: 141 VNKGC 145
N+ C
Sbjct: 1019 TNQIC 1023
>POLG_EC30B (Q9WN78) Genome polyprotein [Contains: Coat protein VP4
(P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core
protein P2A); Core protein P2B; Core protein P2C; Core
protein P3A; Genome
Length = 2194
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 81 CGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNL 140
CGG+LR +G ++G + G + FA++ + A+++G K + + +AF
Sbjct: 970 CGGILRCEHG--VIGLVTMGGEGVVGFADVRDLLWLEDDAMEQGVKDYVEQLGNAFGSGF 1027
Query: 141 VNKGC 145
N+ C
Sbjct: 1028 TNQIC 1032
>POLG_EC12T (Q66575) Genome polyprotein [Contains: Coat protein VP4
(P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core
protein P2A); Core protein P2B; Core protein P2C; Core
protein P3A; Genome
Length = 2193
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 81 CGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNL 140
CGG+LR +G ++G + G + FA++ + A+++G K + + +AF
Sbjct: 969 CGGILRCEHG--VIGLVTMGGEGVVGFADVRDLLWLEDDAMEQGVKDYVEQLGNAFGSGF 1026
Query: 141 VNKGC 145
N+ C
Sbjct: 1027 TNQIC 1031
>POLG_EC11G (P29813) Genome polyprotein [Contains: Coat protein VP4
(P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core
protein P2A); Core protein P2B; Core protein P2C; Core
protein P3A; Genome
Length = 2195
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 81 CGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNL 140
CGG+LR +G ++G + G + FA++ + A+++G K + + +AF
Sbjct: 971 CGGILRCEHG--VIGIVTMGGEGVVGFADVRDLLWLEDDAMEQGVKDYVEQLGNAFGSGF 1028
Query: 141 VNKGC 145
N+ C
Sbjct: 1029 TNQIC 1033
>POLG_EC09H (Q66849) Genome polyprotein [Contains: Coat protein VP4
(P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core
protein P2A); Core protein P2B; Core protein P2C; Core
protein P3A; Genome
Length = 2193
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 81 CGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNL 140
CGG+LR +G ++G + G + FA++ + A+++G K + + +AF
Sbjct: 969 CGGILRCEHG--VIGIVTMGGEGVVGFADVRDLLWLEDDAMEQGVKDYVEQLGNAFGSGF 1026
Query: 141 VNKGC 145
N+ C
Sbjct: 1027 TNQIC 1031
>POLG_EC06C (Q66474) Genome polyprotein [Contains: Coat protein VP4
(P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core
protein P2A); Core protein P2B; Core protein P2C; Core
protein P3A; Genome
Length = 2191
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 81 CGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNL 140
CGG+LR +G ++G + G + FA++ + A+++G K + + +AF
Sbjct: 967 CGGILRCEHG--VIGIVTMGGEGVVGFADVRDLLWLEDDAMEQGVKDYVEQLGNAFGSGF 1024
Query: 141 VNKGC 145
N+ C
Sbjct: 1025 TNQIC 1029
>POLG_EC05N (Q9YLJ1) Genome polyprotein [Contains: Coat protein VP4
(P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core
protein P2A); Core protein P2B; Core protein P2C; Core
protein P3A; Genome
Length = 2196
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 81 CGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNL 140
CGG+LR +G ++G + G + FA++ + A+++G K + + +AF
Sbjct: 972 CGGILRCEHG--VIGIVTMGGEGVVGFADVRDLLWLEDDAMEQGVKDYVEQLGNAFGSGF 1029
Query: 141 VNKGC 145
N+ C
Sbjct: 1030 TNQIC 1034
>POLG_EC01F (O91734) Genome polyprotein [Contains: Coat protein VP4
(P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core
protein P2A); Core protein P2B; Core protein P2C; Core
protein P3A; Genome
Length = 2184
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 81 CGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNL 140
CGG+LR +G ++G + G + FA++ + A+++G K + + +AF
Sbjct: 960 CGGILRCEHG--VIGIVTMGGEGVVGFADVRDLLWLEDDAMEQGVKDYVEQLGNAFGSGF 1017
Query: 141 VNKGC 145
N+ C
Sbjct: 1018 TNQIC 1022
>POLG_CXB5P (Q03053) Genome polyprotein [Contains: Coat protein VP4
(P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core
protein P2A); Core protein P2B; Core protein P2C; Core
protein P3A; Genome
Length = 2185
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 81 CGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNL 140
CGG+LR +G ++G + G + FA++ + A+++G K + + +AF
Sbjct: 961 CGGILRCEHG--VIGLVTMGGEGVVGFADVRDLLWLEDDAMEQGVKDYVEQLGNAFGSGF 1018
Query: 141 VNKGC 145
N+ C
Sbjct: 1019 TNQIC 1023
>POLG_CXB4J (P08292) Genome polyprotein [Contains: Coat protein VP4
(P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core
protein P2A); Core protein P2B; Core protein P2C; Core
protein P3A; Genome
Length = 2183
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 81 CGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNL 140
CGG+LR +G ++G + G + FA++ + A+++G K + + +AF
Sbjct: 959 CGGILRCEHG--VIGLVTMGGEGVVGFADVRDLLWLEDDAMEQGVKDYVEQLGNAFGSGF 1016
Query: 141 VNKGC 145
N+ C
Sbjct: 1017 TNQIC 1021
>POLG_CXA9 (P21404) Genome polyprotein [Contains: Coat protein VP4
(P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core
protein P2A); Core protein P2B; Core protein P2C; Core
protein P3A; Genome-
Length = 2201
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 81 CGGVLRDHNGNYLVGFSALLGRCSINFAELWGIYHGAKLALDRGFKKVMIESDSAFAVNL 140
CGG+LR +G ++G + G + FA++ + A+++G K + + +AF
Sbjct: 977 CGGILRCEHG--VIGIVTMGGEGVVGFADVRDLLWLEDDAMEQGVKDYVEQLGNAFGSGF 1034
Query: 141 VNKGC 145
N+ C
Sbjct: 1035 TNQIC 1039
>Y163_SYNY3 (Q55563) Hypothetical WD-repeat protein sll0163
Length = 1693
Score = 30.0 bits (66), Expect = 4.6
Identities = 24/83 (28%), Positives = 36/83 (42%), Gaps = 6/83 (7%)
Query: 56 WVPPNDDWIKINTDGSYSPVSNLAACGGVLRDHNGNYLVGFSALLGRCSI-----NFAEL 110
W P I ++DG+ S C G LR H+ N +L G+ + N A L
Sbjct: 1227 WSPDGQHIITSSSDGTARVWSRHGKCLGTLRGHDHNIHGARFSLDGQKIVTYSTDNTARL 1286
Query: 111 WGIYHGAKLALDRGFKKVMIESD 133
W G L + RG +K + ++D
Sbjct: 1287 W-TKEGTLLTILRGHQKEVYDAD 1308
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.139 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,900,664
Number of Sequences: 164201
Number of extensions: 1134931
Number of successful extensions: 2490
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2483
Number of HSP's gapped (non-prelim): 40
length of query: 224
length of database: 59,974,054
effective HSP length: 106
effective length of query: 118
effective length of database: 42,568,748
effective search space: 5023112264
effective search space used: 5023112264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0010.5