BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.3
(172 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RA3A_ARATH (Q9FKS4) DNA repair protein ATR (AtATR) (Ataxia telan... 124 8e-29
FAF1_RAT (Q924K2) FAS-associated factor 1 (FAF1 protein) 36 0.050
FAF1_MOUSE (P54731) FAS-associated factor 1 (FAF1 protein) 36 0.050
FAF1_HUMAN (Q9UNN5) FAS-associated factor 1 (FAF1 protein) (hFAF... 36 0.050
MYC_FLVTT (P21438) Myc transforming protein 30 3.6
MYC_FLV (P68272) Myc proto-oncogene protein (v-myc) 30 3.6
MYC_FELCA (P68271) Myc proto-oncogene protein (c-myc) 30 3.6
UL21_HHV1E (P09855) Protein UL21 29 4.7
UL21_HHV11 (P10205) Protein UL21 29 4.7
MYCN_HUMAN (P04198) N-myc proto-oncogene protein 29 4.7
IF2P_YEAST (P39730) Eukaryotic translation initiation factor 5B ... 29 4.7
CARA_NEIMB (Q9JXX4) Carbamoyl-phosphate synthase small chain (EC... 29 4.7
CARA_NEIMA (Q9JVZ6) Carbamoyl-phosphate synthase small chain (EC... 29 4.7
CARA_NEIGO (Q50983) Carbamoyl-phosphate synthase small chain (EC... 29 4.7
Y43R_IRV6 (P18305) Hypothetical protein 443R 29 6.1
RPOB_WOLPI (Q93MK7) DNA-directed RNA polymerase beta chain (EC 2... 29 6.1
COL7_ARATH (Q9C9A9) Putative zinc finger protein CONSTANS-LIKE 7 29 6.1
ANK3_HUMAN (Q12955) Ankyrin 3 (ANK-3) (Ankyrin G) 29 6.1
YPD1_CAEEL (P48053) Hypothetical protein C05D11.1 in chromosome III 28 8.0
BRE5_YEAST (P53741) UBP3-associated protein BRE5 28 8.0
>RA3A_ARATH (Q9FKS4) DNA repair protein ATR (AtATR) (Ataxia
telangiectasia-mutated and Rad3-related homolog)
(Rad3-like protein) (AtRAD3)
Length = 2702
Score = 124 bits (312), Expect = 8e-29
Identities = 76/141 (53%), Positives = 94/141 (65%), Gaps = 10/141 (7%)
Query: 40 NLSSLP----ERIAASSSTLTPN--NPSGE--ALEVRFCTVLPNLLHAYVVPSSSRNNDR 91
NLSSL ER+AAS+ST N + SG+ ALE+RF V+PNLL+ YVVPS N R
Sbjct: 7 NLSSLVHELRERVAASASTPANNLRHSSGDEDALEIRFRAVIPNLLNTYVVPSLG--NGR 64
Query: 92 EVIAVVKLISHTARNFPGVFFLGKPSAVLPVLADILPSYADPLFRSRHRVFFEALGSLLS 151
EV AV+KL+ HTARN PGVF+ G PSA+LPV+A I+P +A+P F H V E +GSLL
Sbjct: 65 EVTAVLKLVGHTARNIPGVFYHGTPSAILPVIARIIPFFAEPEFVPGHGVLLETVGSLLM 124
Query: 152 LFRSGARDASTHFFLDPMLLI 172
L RS +R A FF D + I
Sbjct: 125 LLRSNSRKAYRIFFHDALQAI 145
>FAF1_RAT (Q924K2) FAS-associated factor 1 (FAF1 protein)
Length = 649
Score = 35.8 bits (81), Expect = 0.050
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 538 LEQIRKEQEEEREAIRLSLEQALPPEPEEENAEPVSKLRIRTPSGEFLERRF 589
>FAF1_MOUSE (P54731) FAS-associated factor 1 (FAF1 protein)
Length = 649
Score = 35.8 bits (81), Expect = 0.050
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 538 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 589
>FAF1_HUMAN (Q9UNN5) FAS-associated factor 1 (FAF1 protein) (hFAF1)
(CGI-03)
Length = 650
Score = 35.8 bits (81), Expect = 0.050
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 539 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 590
>MYC_FLVTT (P21438) Myc transforming protein
Length = 437
Score = 29.6 bits (65), Expect = 3.6
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 14 PHSTLVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRFCTVL 73
P +T EE+EEEEE VS+ K + + S S + P L ++ C V
Sbjct: 245 PPTTSSDSEEEQEEEEEIDVVSVEKRQPPAKRSE-SGSPSAGGHSKPPHSPLVLKRCHV- 302
Query: 74 PNLLHAYVVPSSSRNN 89
P H Y P S+R +
Sbjct: 303 PTHQHNYAAPPSTRKD 318
>MYC_FLV (P68272) Myc proto-oncogene protein (v-myc)
Length = 439
Score = 29.6 bits (65), Expect = 3.6
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 14 PHSTLVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRFCTVL 73
P +T EE+EEEEE VS+ K + + S S + P L ++ C V
Sbjct: 245 PPTTSSDSEEEQEEEEEIDVVSVEKRQPPAKRSE-SGSPSAGGHSKPPHSPLVLKRCHV- 302
Query: 74 PNLLHAYVVPSSSRNN 89
P H Y P S+R +
Sbjct: 303 PTHQHNYAAPPSTRKD 318
>MYC_FELCA (P68271) Myc proto-oncogene protein (c-myc)
Length = 439
Score = 29.6 bits (65), Expect = 3.6
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 14 PHSTLVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRFCTVL 73
P +T EE+EEEEE VS+ K + + S S + P L ++ C V
Sbjct: 245 PPTTSSDSEEEQEEEEEIDVVSVEKRQPPAKRSE-SGSPSAGGHSKPPHSPLVLKRCHV- 302
Query: 74 PNLLHAYVVPSSSRNN 89
P H Y P S+R +
Sbjct: 303 PTHQHNYAAPPSTRKD 318
>UL21_HHV1E (P09855) Protein UL21
Length = 535
Score = 29.3 bits (64), Expect = 4.7
Identities = 17/61 (27%), Positives = 29/61 (46%)
Query: 1 MKVKEKELITFTFPHSTLVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNP 60
++V+ ++ I F H T+V V Y ++A+A+L LP + A S L P
Sbjct: 137 LRVRAQDRIIELFEHPTIVNVSSHFVYTPSPYVFALAQAHLPRLPSSLEALVSGLFDGIP 196
Query: 61 S 61
+
Sbjct: 197 A 197
>UL21_HHV11 (P10205) Protein UL21
Length = 535
Score = 29.3 bits (64), Expect = 4.7
Identities = 17/61 (27%), Positives = 29/61 (46%)
Query: 1 MKVKEKELITFTFPHSTLVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNP 60
++V+ ++ I F H T+V V Y ++A+A+L LP + A S L P
Sbjct: 137 LRVRAQDRIIELFEHPTIVNVSSHFVYTPSPYVFALAQAHLPRLPSSLEALVSGLFDGIP 196
Query: 61 S 61
+
Sbjct: 197 A 197
>MYCN_HUMAN (P04198) N-myc proto-oncogene protein
Length = 464
Score = 29.3 bits (64), Expect = 4.7
Identities = 21/68 (30%), Positives = 33/68 (47%), Gaps = 6/68 (8%)
Query: 23 EEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPS-----GEALEVRFCTVLP-NL 76
EEE+EEEE V++ K SS + + + T+ P N + ++ E+ LP +
Sbjct: 269 EEEDEEEEIDVVTVEKRRSSSNTKAVTTFTITVRPKNAALGPGRAQSSELILKRCLPIHQ 328
Query: 77 LHAYVVPS 84
H Y PS
Sbjct: 329 QHNYAAPS 336
>IF2P_YEAST (P39730) Eukaryotic translation initiation factor 5B
(eIF-5B) (Translation initiation factor IF-2)
Length = 1002
Score = 29.3 bits (64), Expect = 4.7
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 23 EEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRFCTVL 73
EEEEEEE A+ +AK S P A++ T + +P+ + L C +L
Sbjct: 365 EEEEEEERAHVHEVAK----STPAATPAATPTPSSASPNKKDLRSPICCIL 411
>CARA_NEIMB (Q9JXX4) Carbamoyl-phosphate synthase small chain (EC
6.3.5.5) (Carbamoyl-phosphate synthetase glutamine
chain)
Length = 377
Score = 29.3 bits (64), Expect = 4.7
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 6 KELITFTFPHSTLVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSS 53
K+++T T+PH E+EE Y + +L L AS S
Sbjct: 50 KQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASES 97
>CARA_NEIMA (Q9JVZ6) Carbamoyl-phosphate synthase small chain (EC
6.3.5.5) (Carbamoyl-phosphate synthetase glutamine
chain)
Length = 377
Score = 29.3 bits (64), Expect = 4.7
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 6 KELITFTFPHSTLVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSS 53
K+++T T+PH E+EE Y + +L L AS S
Sbjct: 50 KQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASES 97
>CARA_NEIGO (Q50983) Carbamoyl-phosphate synthase small chain (EC
6.3.5.5) (Carbamoyl-phosphate synthetase glutamine
chain)
Length = 377
Score = 29.3 bits (64), Expect = 4.7
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 6 KELITFTFPHSTLVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSS 53
K+++T T+PH E+EE Y + +L L AS S
Sbjct: 50 KQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASES 97
>Y43R_IRV6 (P18305) Hypothetical protein 443R
Length = 2432
Score = 28.9 bits (63), Expect = 6.1
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 34 VSMAK-ANLSSLPERIAASSSTLTPNNPS-GEALEVRFCTVLPNLLHAYVVPSSSRNND 90
+++AK ANLS + I +SS+T +P N S G L++ T+ N ++ SS N D
Sbjct: 2166 ITLAKMANLSGTSQLIGSSSTTTSPANISLGSTLQMSGTTLSVNTSTLMLLVPSSVNGD 2224
>RPOB_WOLPI (Q93MK7) DNA-directed RNA polymerase beta chain (EC
2.7.7.6) (RNAP beta subunit) (Transcriptase beta chain)
(RNA polymerase beta subunit)
Length = 1436
Score = 28.9 bits (63), Expect = 6.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 36 MAKANLSSLPERIAASSSTLTPNNPSGEALEVRFCTVLP 74
+ K +L L + S ++ TPNN S E LE F T+ P
Sbjct: 30 LVKDSLLDLVKVQKGSYNSFTPNNESNERLEAIFHTIFP 68
>COL7_ARATH (Q9C9A9) Putative zinc finger protein CONSTANS-LIKE 7
Length = 392
Score = 28.9 bits (63), Expect = 6.1
Identities = 13/29 (44%), Positives = 19/29 (64%)
Query: 3 VKEKELITFTFPHSTLVRVREEEEEEEEA 31
+KE+ + F L RV++E+EEEEEA
Sbjct: 225 IKEENKVGFEINCKDLKRVKDEDEEEEEA 253
>ANK3_HUMAN (Q12955) Ankyrin 3 (ANK-3) (Ankyrin G)
Length = 4377
Score = 28.9 bits (63), Expect = 6.1
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 49 AASSSTLTPNNPSGEALEVRFCTVLPNLLHAYV------VPSSSRNNDRE 92
++ S LTP PS E + F + P+ L AY+ +P S ++ E
Sbjct: 3161 SSGKSPLTPETPSSEEVSYEFTSKTPDSLIAYIPGKPSPIPEVSEESEEE 3210
>YPD1_CAEEL (P48053) Hypothetical protein C05D11.1 in chromosome III
Length = 995
Score = 28.5 bits (62), Expect = 8.0
Identities = 18/65 (27%), Positives = 30/65 (45%), Gaps = 9/65 (13%)
Query: 11 FTFPHSTLV---------RVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPS 61
FT P +T++ ++ EEEE+ A + K L + + A+ T N+PS
Sbjct: 444 FTAPSATVIGVPNEELVDKIAEEEEKRIAAQCEKLGKKGLEEAGKSLEAAILENTANHPS 503
Query: 62 GEALE 66
E L+
Sbjct: 504 AELLD 508
>BRE5_YEAST (P53741) UBP3-associated protein BRE5
Length = 515
Score = 28.5 bits (62), Expect = 8.0
Identities = 19/71 (26%), Positives = 38/71 (52%), Gaps = 2/71 (2%)
Query: 23 EEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRFCTVL-PNLLHAYV 81
E+E+E+E++ +S KA ++ + A + S+ T P + + R V + +H
Sbjct: 179 EKEKEKEKSPEISKPKAKKETVKDTTAPTESS-TQEKPIVDHSQPRAIPVTKESKIHTET 237
Query: 82 VPSSSRNNDRE 92
VPSS++ N ++
Sbjct: 238 VPSSTKGNHKQ 248
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.135 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,776,546
Number of Sequences: 164201
Number of extensions: 800666
Number of successful extensions: 2754
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2727
Number of HSP's gapped (non-prelim): 35
length of query: 172
length of database: 59,974,054
effective HSP length: 102
effective length of query: 70
effective length of database: 43,225,552
effective search space: 3025788640
effective search space used: 3025788640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0010.3