BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.16
(405 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GLRX_RICPR (Q9ZDW1) Glutaredoxin 40 0.008
NP14_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130... 38 0.053
GLR3_ECOLI (P37687) Glutaredoxin 3 (Grx3) 38 0.053
SH3N_MOUSE (Q91VW3) SH3 domain-binding glutamic acid-rich-like p... 36 0.15
GRLA_RICCN (Q92GH5) Probable monothiol glutaredoxin grlA 36 0.20
SH3N_HUMAN (Q9H299) SH3 domain-binding glutamic acid-rich-like p... 35 0.26
IF2P_PYRAB (Q9UZK7) Probable translation initiation factor IF-2 ... 35 0.45
YZ73_CAEEL (Q19297) Hypothetical protein F10D7.3 in chromosome X 34 0.76
REST_CHICK (O42184) Restin (Cytoplasmic linker protein-170) (CLI... 34 0.76
DF1A_ARATH (Q9SEZ3) Dof zinc finger protein DOF1.10 (AtDOF1.10) ... 34 0.76
TXL2_RAT (Q9JLZ1) Thioredoxin-like 2 protein (PKC-interacting co... 33 1.00
TXL2_MOUSE (Q9CQM9) Thioredoxin-like protein 2 (PKC-interacting ... 33 1.00
TXL2_HUMAN (O76003) Thioredoxin-like protein 2 (PKC-interacting ... 33 1.00
MUT7_CAEEL (P34607) Probable exonuclease mut-7 (EC 3.1.-.-) 33 1.7
GLRX_VERFO (O81187) Glutaredoxin 32 2.2
ARGJ_STAEP (Q8CSF9) Arginine biosynthesis bifunctional protein a... 32 2.2
GRLA_RICPR (O05957) Probable monothiol glutaredoxin grlA 32 2.9
ATX7_HUMAN (O15265) Ataxin-7 (Spinocerebellar ataxia type 7 prot... 32 2.9
ARH7_RAT (O55043) Rho guanine nucleotide exchange factor 7 (PAK-... 32 2.9
TUB_HUMAN (P50607) Tubby protein homolog 32 3.8
>GLRX_RICPR (Q9ZDW1) Glutaredoxin
Length = 95
Score = 40.4 bits (93), Expect = 0.008
Identities = 30/95 (31%), Positives = 48/95 (49%), Gaps = 8/95 (8%)
Query: 261 NSVVIYTTTLRGIRKTFEDCNKVRAIIESYCVQMRERDVS-MDSGFKEELRKLMGAEQVK 319
++++IYT + C K +A+++ V E +VS + KE+ K G +
Sbjct: 7 HTIIIYTLA------SCPYCIKAKALLDKKNVIYEEIEVSNLTQEEKEKFIKKSGGKST- 59
Query: 320 VPVVFVKGRLVGGVDEVVKLEDEEKLGVLLEGIPK 354
VP +F+ VGG D++ LE E +L LLE PK
Sbjct: 60 VPQIFIDNMHVGGCDDLFNLEKEGRLDKLLEHQPK 94
>NP14_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130
kDa protein) (140 kDa nucleolar phosphoprotein)
(Nopp140) (Nucleolar and coiled-body phosphoprotein 1)
Length = 699
Score = 37.7 bits (86), Expect = 0.053
Identities = 50/218 (22%), Positives = 81/218 (36%), Gaps = 34/218 (15%)
Query: 48 KDNDQPVIAAKPREEPEAITTINAWELMEGLEDGVPISNQPKKSPKSSSPFLRGFMNSDT 107
K+ P A P P ++ + +E P+ + S +S S +
Sbjct: 283 KNKPGPYSYAPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSS-----SEEEK 337
Query: 108 RSPLKFLNQLGSPKTVKKSTGKENKVQVNGVRTGGVRRLDYSNSPKGILKPSNLSPNASK 167
+ P K + V K+T K + + D S + KP+ + N+S
Sbjct: 338 KPPTKAV--------VSKATTKPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSN 389
Query: 168 NSGIPAKG---SPICARRKSFGGNEKDTLQCSSRRKSQSPLFDPELVASYEKELSEEEEQ 224
+ K P A ++ GG +K RK+ S +S E+ S EEE+
Sbjct: 390 KPAVTTKSPAVKPAAAPKQPVGGGQK-----LLTRKADSS-------SSEEESSSSEEEK 437
Query: 225 VKRMVWATPKTRRARKSLDSLSLIQMFEKKCPPGGENS 262
K+MV AT K + K+ SL K+ P G +S
Sbjct: 438 TKKMV-ATTKPKATAKAALSLP-----AKQAPQGSRDS 469
>GLR3_ECOLI (P37687) Glutaredoxin 3 (Grx3)
Length = 82
Score = 37.7 bits (86), Expect = 0.053
Identities = 24/89 (26%), Positives = 47/89 (51%), Gaps = 8/89 (8%)
Query: 262 SVVIYTTTLRGIRKTFEDCNKVRAIIESYCVQMRERDVSMDSGFKEELRKLMGAEQVKVP 321
+V IYT ++T C++ +A++ S V +E + ++ +EE+ K G + VP
Sbjct: 2 NVEIYT------KETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG--RTTVP 53
Query: 322 VVFVKGRLVGGVDEVVKLEDEEKLGVLLE 350
+F+ + +GG D++ L+ L LL+
Sbjct: 54 QIFIDAQHIGGCDDLYALDARGGLDPLLK 82
>SH3N_MOUSE (Q91VW3) SH3 domain-binding glutamic acid-rich-like
protein 3
Length = 93
Score = 36.2 bits (82), Expect = 0.15
Identities = 19/86 (22%), Positives = 43/86 (49%)
Query: 265 IYTTTLRGIRKTFEDCNKVRAIIESYCVQMRERDVSMDSGFKEELRKLMGAEQVKVPVVF 324
+Y+T++ G R+ ++V I++ +Q + D+S D+ ++E+R L G + P +
Sbjct: 6 VYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIV 65
Query: 325 VKGRLVGGVDEVVKLEDEEKLGVLLE 350
G + V+ +++ L L+
Sbjct: 66 NGNHYCGDYELFVEAVEQDTLQEFLK 91
>GRLA_RICCN (Q92GH5) Probable monothiol glutaredoxin grlA
Length = 107
Score = 35.8 bits (81), Expect = 0.20
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 261 NSVVIYTTTLRGIRKTFEDCN---KVRAIIESYCVQMRERDVSMDSGFKEELRKLMGAEQ 317
N VV++ ++GI+K+ C V AI+ V+ R+ +V D+ +E+L+K ++
Sbjct: 17 NKVVLF---MKGIKKS-PACGFSGTVVAILNKLGVEFRDINVLFDAELREDLKKF--SDW 70
Query: 318 VKVPVVFVKGRLVGGVDEVVKLEDEEKLGVLLE 350
P +++ G LVGG D +L +L +L+
Sbjct: 71 PTFPQLYINGELVGGCDIARELYQSGELEKMLK 103
>SH3N_HUMAN (Q9H299) SH3 domain-binding glutamic acid-rich-like
protein 3 (SH3 domain-binding protein SH3BP-1) (P1725)
Length = 93
Score = 35.4 bits (80), Expect = 0.26
Identities = 19/86 (22%), Positives = 43/86 (49%)
Query: 265 IYTTTLRGIRKTFEDCNKVRAIIESYCVQMRERDVSMDSGFKEELRKLMGAEQVKVPVVF 324
+Y+T++ G R+ ++V I++ +Q + D+S D+ ++E+R L G + P +
Sbjct: 6 VYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKATPPQIV 65
Query: 325 VKGRLVGGVDEVVKLEDEEKLGVLLE 350
+ G + V+ ++ L L+
Sbjct: 66 NGDQYCGDYELFVEAVEQNTLQEFLK 91
>IF2P_PYRAB (Q9UZK7) Probable translation initiation factor IF-2
[Contains: Pab infB intein (Pab IF2 intein)]
Length = 992
Score = 34.7 bits (78), Expect = 0.45
Identities = 39/154 (25%), Positives = 68/154 (43%), Gaps = 16/154 (10%)
Query: 203 SPLFDPELVASYEKELSEEEEQVKRMVWATPKTRRARKSLDSLSLIQMFEKKCPPGGENS 262
SP+ EK E EQ++R+V +T K K+ D+L ++ K+ E
Sbjct: 718 SPVIAAPTPEDVEKAKQEILEQIERVVISTDKVGVIVKA-DTLGSLEALSKELQ---EKE 773
Query: 263 VVIYTTTLRGIRKTFEDCNKVRAIIESYCVQMRERDVSMDSGFK----EELRKLMGAEQV 318
+ I + + KT ++E+ V+ E + GF E+ ++ A+ V
Sbjct: 774 IPIRKADVGNVSKT--------DVMEALSVKEEEPKYGVILGFNVKVNEDAEEVAKAKDV 825
Query: 319 KVPVVFVKGRLVGGVDEVVKLEDEEKLGVLLEGI 352
K+ V V +L+ +E VK E+E+K LL +
Sbjct: 826 KIFVGNVIYKLIEDYEEWVKEEEEKKKRELLSKV 859
>YZ73_CAEEL (Q19297) Hypothetical protein F10D7.3 in chromosome X
Length = 146
Score = 33.9 bits (76), Expect = 0.76
Identities = 22/72 (30%), Positives = 44/72 (60%), Gaps = 4/72 (5%)
Query: 282 KVRAIIESYCVQMRERDVSMD-SGFKEELRKLMG--AEQVKVPVVFVKGRLVGGVDEVVK 338
+++AI+ +Y + + V +D S EE+++++ + + VP +F+ G+ VGG DE
Sbjct: 59 RLKAILANYEIDDM-KIVELDRSNQTEEMQEILKKYSGRTTVPQLFISGKFVGGHDETKA 117
Query: 339 LEDEEKLGVLLE 350
+E++ +L LLE
Sbjct: 118 IEEKGELRPLLE 129
>REST_CHICK (O42184) Restin (Cytoplasmic linker protein-170)
(CLIP-170)
Length = 1433
Score = 33.9 bits (76), Expect = 0.76
Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 18/231 (7%)
Query: 47 DKDNDQPVIAAKPREEPEAITTINAWELMEG--LEDGVPISNQPKKSPKSSSPFLRGFMN 104
D+ N A P + +T +A L G+P P + + S+P ++
Sbjct: 133 DEANGTQTAHASRATSPTSTSTASAVSASPAALLPSGIPQKTSPLAAKEHSTPSQFSNLS 192
Query: 105 SDTRSPLKFLNQLGSPKTVKKSTGKENKVQVNGVRTGGVRRLDYSNSPKGILKPSNLSPN 164
+ L++ GS K ++ ++V V G + G VR L ++ KG L
Sbjct: 193 KTASGSVSNLSEAGSLKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEP 252
Query: 165 ASKNSGIPAKGSPICARRKSFGGNEKDTLQCSSRRKSQSPLFDPELVASYEKELSEEEEQ 224
KN G A QC R +P+ + ++ +
Sbjct: 253 LGKNDGAVA---------------GTRYFQCQPRYGLFAPVHKVTKIGFPSTTPAKAKTT 297
Query: 225 VKRMVWATPKTRRARKSLDSLSLIQMFEKKCPPGGENSVVIYTTTLRGIRK 275
V+++V ATP + S SLS + + ++ T+ R RK
Sbjct: 298 VRKVV-ATPAALKRSPSASSLSSLSSVASSVSSKPSRTGLLTETSSRYARK 347
>DF1A_ARATH (Q9SEZ3) Dof zinc finger protein DOF1.10 (AtDOF1.10)
(H-protein promoter binding factor-2b)
Length = 399
Score = 33.9 bits (76), Expect = 0.76
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 83 PISNQPKKSPKSSSPFLRGFMNSDTRSPLKFLNQLGSPKTVKKSTGKENKVQVNGV--RT 140
PI KKS + S+ F ++ SD P K ++++ SP++ K + +++++ T
Sbjct: 58 PIRVPVKKSEQESNKFKDPYILSDLNEPPKAVSEISSPRSSKNNCDQQSEITTTTTTSTT 117
Query: 141 GGVRRLDYSNSPKGILKPSNLSPNA------SKNSGIPAKGSPICARRKSFGGNEKDTLQ 194
G + K I P S N + N P C R + GG+ ++
Sbjct: 118 SGEKSTALKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPV 177
Query: 195 CSSRRKSQ 202
S RRK++
Sbjct: 178 GSGRRKNK 185
>TXL2_RAT (Q9JLZ1) Thioredoxin-like 2 protein (PKC-interacting
cousin of thioredoxin) (PKCq-interacting protein)
(PKC-theta-interacting protein)
Length = 279
Score = 33.5 bits (75), Expect = 1.00
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 286 IIESYCVQMRERDVSMDSGFKEELRKLMGAEQVKVPVVFVKGRLVGGVDEVVKLEDEEKL 345
I+ + +Q D+ D ++ L+ + P ++V G L+GG+D + +LE E+L
Sbjct: 112 ILHKHNIQFSSFDIFSDEEVRQGLKTY--SNWPTYPQLYVSGELIGGLDIIKELEASEEL 169
Query: 346 GVLLEGIPK 354
+ PK
Sbjct: 170 DTICPKAPK 178
Score = 32.0 bits (71), Expect = 2.9
Identities = 20/70 (28%), Positives = 38/70 (53%), Gaps = 2/70 (2%)
Query: 282 KVRAIIESYCVQMRERDVSMDSGFKEELRKLMGAEQVKVPVVFVKGRLVGGVDEVVKLED 341
++ I+ S V+ D+ D ++ L+ + P ++V+G LVGG+D V +L+D
Sbjct: 210 QILEILNSTGVEYETFDILEDEEVRQGLKTF--SNWPTYPQLYVRGDLVGGLDIVKELKD 267
Query: 342 EEKLGVLLEG 351
+L +L+G
Sbjct: 268 NGELLPILKG 277
>TXL2_MOUSE (Q9CQM9) Thioredoxin-like protein 2 (PKC-interacting
cousin of thioredoxin) (PKC-theta-interacting protein)
(PKCq-interacting protein)
Length = 337
Score = 33.5 bits (75), Expect = 1.00
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 286 IIESYCVQMRERDVSMDSGFKEELRKLMGAEQVKVPVVFVKGRLVGGVDEVVKLEDEEKL 345
I+ + +Q D+ D ++ L+ + P ++V G L+GG+D + +LE E+L
Sbjct: 170 ILHKHNIQFSSFDIFSDEEVRQGLKTY--SNWPTYPQLYVSGELIGGLDIIKELEASEEL 227
Query: 346 GVLLEGIPK 354
+ PK
Sbjct: 228 DTICPKAPK 236
Score = 32.0 bits (71), Expect = 2.9
Identities = 20/70 (28%), Positives = 38/70 (53%), Gaps = 2/70 (2%)
Query: 282 KVRAIIESYCVQMRERDVSMDSGFKEELRKLMGAEQVKVPVVFVKGRLVGGVDEVVKLED 341
++ I+ S V+ D+ D ++ L+ + P ++V+G LVGG+D V +L+D
Sbjct: 268 QILEILNSTGVEYETFDILEDEEVRQGLKTF--SNWPTYPQLYVRGDLVGGLDIVKELKD 325
Query: 342 EEKLGVLLEG 351
+L +L+G
Sbjct: 326 NGELLPILKG 335
>TXL2_HUMAN (O76003) Thioredoxin-like protein 2 (PKC-interacting
cousin of thioredoxin) (PKC-theta-interacting protein)
(PKCq-interacting protein) (HUSSY-22)
Length = 335
Score = 33.5 bits (75), Expect = 1.00
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 286 IIESYCVQMRERDVSMDSGFKEELRKLMGAEQVKVPVVFVKGRLVGGVDEVVKLEDEEKL 345
I+ + +Q D+ D ++ L+ + P ++V G L+GG+D + +LE E+L
Sbjct: 168 ILHKHNIQFSSFDIFSDEEVRQGLKAY--SSWPTYPQLYVSGELIGGLDIIKELEASEEL 225
Query: 346 GVLLEGIPK 354
+ PK
Sbjct: 226 DTICPKAPK 234
Score = 31.6 bits (70), Expect = 3.8
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 282 KVRAIIESYCVQMRERDVSMDSGFKEELRKLMGAEQVKVPVVFVKGRLVGGVDEVVKLED 341
++ I+ S V+ D+ D ++ L+ + P ++VKG LVGG+D V +L++
Sbjct: 266 QILEILNSTGVEYETFDILEDEEVRQGLKAY--SNWPTYPQLYVKGELVGGLDIVKELKE 323
Query: 342 EEKLGVLLEG 351
+L +L G
Sbjct: 324 NGELLPILRG 333
>MUT7_CAEEL (P34607) Probable exonuclease mut-7 (EC 3.1.-.-)
Length = 910
Score = 32.7 bits (73), Expect = 1.7
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 26 GGRYLSHVVSLTSSTYGALKLDKDN 50
GG +L H++++ S +Y ALK+D DN
Sbjct: 707 GGEHLRHIITVPSKSYEALKMDYDN 731
>GLRX_VERFO (O81187) Glutaredoxin
Length = 104
Score = 32.3 bits (72), Expect = 2.2
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 261 NSVVIYTTTLRGIRKTF-EDCNKVRAIIESYCVQMR--ERDVSMD-SGFKEELRKLMGAE 316
NSVV+++ KTF C V+ ++ Q + E D D S + L + G
Sbjct: 13 NSVVVFS-------KTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTG-- 63
Query: 317 QVKVPVVFVKGRLVGGVDEVVKLEDEEKLGVLL 349
Q VP VF+ G+ +GG D+ + E KL LL
Sbjct: 64 QRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLL 96
>ARGJ_STAEP (Q8CSF9) Arginine biosynthesis bifunctional protein argJ
[Includes: Glutamate N-acetyltransferase (EC 2.3.1.35)
(Ornithine acetyltransferase) (Ornithine transacetylase)
(OATase); Amino-acid acetyltransferase (EC 2.3.1.1)
(N-acetylglutamate syn
Length = 397
Score = 32.3 bits (72), Expect = 2.2
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 272 GIRKTFEDCNKVRAIIESYCVQMRERDVSMDSGFKEELRKLMGAEQVKVPVVFVKGRLVG 331
G KT+ D N+V I V +R V D KEE++++M AE++ + + +G G
Sbjct: 321 GYAKTYFDINQVDIFIGRIPVLIRSSPVKYD---KEEIQEIMSAEEISIQLDLHQGNCEG 377
>GRLA_RICPR (O05957) Probable monothiol glutaredoxin grlA
Length = 107
Score = 32.0 bits (71), Expect = 2.9
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 283 VRAIIESYCVQMRERDVSMDSGFKEELRKLMGAEQVKVPVVFVKGRLVGGVDEVVKLEDE 342
V AI+ V+ + +V D+ +E+L+K ++ P +++ G LVGG D +L
Sbjct: 38 VVAILNKLGVEFSDINVLFDTALREDLKKF--SDWPTFPQLYINGVLVGGCDIAKELYQN 95
Query: 343 EKLGVLLEGI 352
+L +L+ +
Sbjct: 96 GELEKMLKDV 105
>ATX7_HUMAN (O15265) Ataxin-7 (Spinocerebellar ataxia type 7
protein)
Length = 892
Score = 32.0 bits (71), Expect = 2.9
Identities = 33/118 (27%), Positives = 50/118 (41%), Gaps = 3/118 (2%)
Query: 55 IAAKPREEPEAITTINAWELMEGLEDGVPISNQPKKSPKSSSPFLRGFMNSDTRSPLKFL 114
I+ + P TT+NA G D V + S SSSP ++S SP+
Sbjct: 611 ISPNSKSVPAHGTTLNAQPAASGAMDPVCSMQSRQVSSSSSSPSTPSGLSSVPSSPMSRK 670
Query: 115 NQ-LGSPKTV--KKSTGKENKVQVNGVRTGGVRRLDYSNSPKGILKPSNLSPNASKNS 169
Q L S K++ K+S+G Q T G NS ++ S+ S ++S +S
Sbjct: 671 PQKLKSSKSLRPKESSGNSTNCQNASSSTSGGSGKKRKNSSPLLVHSSSSSSSSSSSS 728
>ARH7_RAT (O55043) Rho guanine nucleotide exchange factor 7
(PAK-interacting exchange factor beta) (Beta-Pix)
Length = 646
Score = 32.0 bits (71), Expect = 2.9
Identities = 35/146 (23%), Positives = 59/146 (39%), Gaps = 31/146 (21%)
Query: 203 SPLFDPELVASYEKELSEEEEQVKRMVWATPKTRRARKSLDSLSLIQMFEKKCPPGGENS 262
+P P Y+++LS + +K+++ PK + RK P E
Sbjct: 480 APPLRPSAALCYKEDLSRSPKTMKKLL---PKRKPERK----------------PSDEEF 520
Query: 263 VVIYTTTLRGIRKTFEDCNKVRAIIESYCVQMRERDVSMDSGFKEELRKLMGAEQVKVPV 322
V +T E+ ++ +IE+YC + R S KE +++ E+ K+ V
Sbjct: 521 AVRKSTA------ALEEDAQILKVIEAYCTSAKTRQTLNSSSRKESAPQVLLPEEEKIIV 574
Query: 323 VFVK--GRLV----GGVDEVVKLEDE 342
K G+ V VD V L+DE
Sbjct: 575 EETKSNGQTVIEEKSLVDTVYALKDE 600
>TUB_HUMAN (P50607) Tubby protein homolog
Length = 506
Score = 31.6 bits (70), Expect = 3.8
Identities = 40/187 (21%), Positives = 76/187 (40%), Gaps = 23/187 (12%)
Query: 74 LMEGLEDGVPISNQPKKSPKSSSPFLRGFMNSDTRSPLKFLN-------QLGSPKTVKKS 126
+++ DG P S + ++S + +P + +++S + + QLG+ + +
Sbjct: 47 MVQANADGRPRSRRARQS-EEQAPLVESYLSSSGSTSYQVQEADSLASVQLGATRPTAPA 105
Query: 127 TGKENKVQVNGVRTGGVRRLDYSNSPKGILKPSNLSPNASKNSG------IPAKGSPICA 180
+ K K GG R + KG P+ L+ + S+ G + A
Sbjct: 106 SAKRTKAAATAGGQGGAARKEKKGKHKGTSGPAALAEDKSEAQGPVQILTVGQSDHAQDA 165
Query: 181 RRKSFGGNEKDT---LQCSSRRK--SQSPLFDPELVASYEKELSEEEEQVKRMVWATPKT 235
+ GG E+ + L+ + +RK S S FD + E+E S Q+ P +
Sbjct: 166 GETAAGGGERPSGQDLRATMQRKGISSSMSFDED--EEDEEENSSSSSQLNSN--TRPSS 221
Query: 236 RRARKSL 242
+RKS+
Sbjct: 222 ATSRKSV 228
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.314 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,092,724
Number of Sequences: 164201
Number of extensions: 2354641
Number of successful extensions: 5480
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 5456
Number of HSP's gapped (non-prelim): 46
length of query: 405
length of database: 59,974,054
effective HSP length: 113
effective length of query: 292
effective length of database: 41,419,341
effective search space: 12094447572
effective search space used: 12094447572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0010.16